1. Brain Regional Differences in Hexanucleotide Repeat Length in X-Linked Dystonia-Parkinsonism Using Nanopore Sequencing
- Author
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Aleksandar Rakovic, Daniel Alvarez-Fischer, Inke R. König, Imke Weyers, Susen Schaake, Karen Grütz, Norbert Brüggemann, Ana Westenberger, Björn-Hergen Laabs, Charles Jourdan Reyes, Theresa Lüth, Christine Klein, Valerija Dobricic, Raphaela Ardicoglu, Roland Dominic G. Jamora, Joanne Trinh, and Raymond L. Rosales
- Subjects
0301 basic medicine ,Cerebellum ,Pituitary gland ,Biology ,X-Linked Dystonia Parkinsonism ,Molecular biology ,Article ,03 medical and health sciences ,genomic DNA ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Cortex (anatomy) ,Basal ganglia ,medicine ,Neurology (clinical) ,Nanopore sequencing ,030217 neurology & neurosurgery ,Genetics (clinical) ,Southern blot - Abstract
ObjectiveOur study investigated the presence of regional differences in hexanucleotide repeat number in postmortem brain tissues of 2 patients with X-linked dystonia-parkinsonism (XDP), a combined dystonia-parkinsonism syndrome modified by a (CCCTCT)n repeat within the causal SINE-VNTR-Alu retrotransposon insertion in the TAF1 gene.MethodsGenomic DNA was extracted from blood and postmortem brain samples, including the basal ganglia and cortex from both patients and from the cerebellum, midbrain, and pituitary gland from 1 patient. Repeat sizing was performed using fragment analysis, small-pool PCR-based Southern blotting, and Oxford nanopore sequencing.ResultsThe basal ganglia (p < 0.001) and cerebellum (p < 0.001) showed higher median repeat numbers and higher degrees of repeat instability compared with blood.ConclusionsSomatic repeat instability may predominate in brain regions selectively affected in XDP, thereby hinting at its potential role in disease manifestation and modification.
- Published
- 2021