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14 results on '"SILMAN, MILES R."'

1. One sixth of Amazonian tree diversity is dependent on river floodplains

Author: Ecology and Biodiversity, Afd. Botanische tuinen, Sub Ecology and Biodiversity, Householder, John Ethan, Wittmann, Florian, Schöngart, Jochen, Piedade, Maria Teresa Fernandez, Junk, Wolfgang J., Latrubesse, Edgardo Manuel, Quaresma, Adriano Costa, Demarchi, Layon O., de S. Lobo, Guilherme, Aguiar, Daniel P.P.de, Assis, Rafael L., Lopes, Aline, Parolin, Pia, Leão do Amaral, Iêda, Coelho, Luiz de Souza, de Almeida Matos, Francisca Dionízia, Lima Filho, Diógenes de Andrade, Salomão, Rafael P., Castilho, Carolina V., Guevara-Andino, Juan Ernesto, Carim, Marcelo de Jesus Veiga, Phillips, Oliver L., Cárdenas López, Dairon, Magnusson, William E., Sabatier, Daniel, Revilla, Juan David Cardenas, Molino, Jean François, Irume, Mariana Victória, Martins, Maria Pires, Guimarães, José Renan da Silva, Ramos, José Ferreira, Rodrigues, Domingos de Jesus, Bánki, Olaf S., Peres, Carlos A., Pitman, Nigel C.A., Hawes, Joseph E., Almeida, Everton José, Barbosa, Luciane Ferreira, Cavalheiro, Larissa, dos Santos, Márcia Cléia Vilela, Luize, Bruno Garcia, Novo, Evlyn Márcia Moraes de Leão, Núñez Vargas, Percy, Silva, Thiago Sanna Freire, Venticinque, Eduardo Martins, Manzatto, Angelo Gilberto, Reis, Neidiane Farias Costa, Terborgh, John, Casula, Katia Regina, Costa, Flávia R.C., Honorio Coronado, Euridice N., Monteagudo Mendoza, Abel, Montero, Juan Carlos, Feldpausch, Ted R., Aymard C, Gerardo A., Baraloto, Chris, Castaño Arboleda, Nicolás, Engel, Julien, Petronelli, Pascal, Zartman, Charles Eugene, Killeen, Timothy J., Rincón, Lorena Maniguaje, Marimon, Beatriz S., Marimon-Junior, Ben Hur, Schietti, Juliana, Sousa, Thaiane R., Vasquez, Rodolfo, Mostacedo, Bonifacio, Dantas do Amaral, Dário, Castellanos, Hernán, Medeiros, Marcelo Brilhante de, Simon, Marcelo Fragomeni, Andrade, Ana, Camargo, José Luís, Laurance, William F., Laurance, Susan G.W., Farias, Emanuelle de Sousa, Lopes, Maria Aparecida, Magalhães, José Leonardo Lima, Mendonça Nascimento, Henrique Eduardo, Queiroz, Helder Lima de, Brienen, Roel, Stevenson, Pablo R., Araujo-Murakami, Alejandro, Baker, Tim R., Cintra, Bruno Barçante Ladvocat, Feitosa, Yuri Oliveira, Mogollón, Hugo F., Noronha, Janaína Costa, Barbosa, Flávia Rodrigues, de Sá Carpanedo, Rainiellen, Duivenvoorden, Joost F., Silman, Miles R., Ferreira, Leandro Valle, Levis, Carolina, Lozada, José Rafael, Comiskey, James A., Draper, Freddie C., Toledo, José Julio de, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Vicentini, Alberto, Cornejo Valverde, Fernando, Alonso, Alfonso, Arroyo, Luzmila, Dallmeier, Francisco, Gomes, Vitor H.F., Jimenez, Eliana M., Neill, David, Peñuela Mora, Maria Cristina, Carvalho, Fernanda Antunes, Coelho de Souza, Fernanda, Feeley, Kenneth J., Gribel, Rogerio, Pansonato, Marcelo Petratti, Ríos Paredes, Marcos, Barlow, Jos, Berenguer, Erika, Dexter, Kyle G., Ferreira, Joice, Fine, Paul V.A., Guedes, Marcelino Carneiro, Huamantupa-Chuquimaco, Isau, Licona, Juan Carlos, Pennington, Toby, Villa Zegarra, Boris Eduardo, Vos, Vincent Antoine, Cerón, Carlos, Fonty, Émile, Henkel, Terry W., Maas, Paul, Pos, Edwin, Silveira, Marcos, Stropp, Juliana, Thomas, Raquel, Daly, Doug, Milliken, William, Pardo Molina, Guido, Vieira, Ima Célia Guimarães, Albuquerque, Bianca Weiss, Campelo, Wegliane, Emilio, Thaise, Fuentes, Alfredo, Klitgaard, Bente, Marcelo Pena, José Luis, Souza, Priscila F., Tello, J. Sebastián, Vriesendorp, Corine, Chave, Jerome, Di Fiore, Anthony, Hilário, Renato Richard, Pereira, Luciana de Oliveira, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, van Andel, Tinde R., von Hildebrand, Patricio, Balee, William, Barbosa, Edelcilio Marques, Bonates, Luiz Carlos de Matos, Doza, Hilda Paulette Dávila, Gómez, Ricardo Zárate, Gonzales, Therany, Gonzales, George Pepe Gallardo, Hoffman, Bruce, Junqueira, André Braga, Malhi, Yadvinder, Miranda, Ires Paula de Andrade, Mozombite-Pinto, Linder Felipe, Prieto, Adriana, Rudas, Agustín, Ruschel, Ademir R., Silva, Natalino, Vela, César I.A., Zent, Stanford, Zent, Egleé L., Cano, Angela, Carrero Márquez, Yrma Andreina, Correa, Diego F., Costa, Janaina Barbosa Pedrosa, Flores, Bernardo Monteiro, Galbraith, David, Holmgren, Milena, Kalamandeen, Michelle, Nascimento, Marcelo Trindade, Oliveira, Alexandre A., Ramirez-Angulo, Hirma, Rocha, Maira, Scudeller, Veridiana Vizoni, Sierra, Rodrigo, Tirado, Milton, Umaña, Maria Natalia, van der Heijden, Geertje, Vilanova Torre, Emilio, Ahuite Reategui, Manuel Augusto, Baider, Cláudia, Balslev, Henrik, Cárdenas, Sasha, Casas, Luisa Fernanda, Farfan-Rios, William, Ferreira, Cid, Linares-Palomino, Reynaldo, Mendoza, Casimiro, Mesones, Italo, Parada, Germaine Alexander, Torres-Lezama, Armando, Urrego Giraldo, Ligia Estela, Villarroel, Daniel, Zagt, Roderick, Alexiades, Miguel N., de Oliveira, Edmar Almeida, Garcia-Cabrera, Karina, Hernandez, Lionel, Palacios Cuenca, Walter, Pansini, Susamar, Pauletto, Daniela, Ramirez Arevalo, Freddy, Sampaio, Adeilza Felipe, Valderrama Sandoval, Elvis H., Valenzuela Gamarra, Luis, ter Steege, Hans, Ecology and Biodiversity, Afd. Botanische tuinen, Sub Ecology and Biodiversity, Householder, John Ethan, Wittmann, Florian, Schöngart, Jochen, Piedade, Maria Teresa Fernandez, Junk, Wolfgang J., Latrubesse, Edgardo Manuel, Quaresma, Adriano Costa, Demarchi, Layon O., de S. Lobo, Guilherme, Aguiar, Daniel P.P.de, Assis, Rafael L., Lopes, Aline, Parolin, Pia, Leão do Amaral, Iêda, Coelho, Luiz de Souza, de Almeida Matos, Francisca Dionízia, Lima Filho, Diógenes de Andrade, Salomão, Rafael P., Castilho, Carolina V., Guevara-Andino, Juan Ernesto, Carim, Marcelo de Jesus Veiga, Phillips, Oliver L., Cárdenas López, Dairon, Magnusson, William E., Sabatier, Daniel, Revilla, Juan David Cardenas, Molino, Jean François, Irume, Mariana Victória, Martins, Maria Pires, Guimarães, José Renan da Silva, Ramos, José Ferreira, Rodrigues, Domingos de Jesus, Bánki, Olaf S., Peres, Carlos A., Pitman, Nigel C.A., Hawes, Joseph E., Almeida, Everton José, Barbosa, Luciane Ferreira, Cavalheiro, Larissa, dos Santos, Márcia Cléia Vilela, Luize, Bruno Garcia, Novo, Evlyn Márcia Moraes de Leão, Núñez Vargas, Percy, Silva, Thiago Sanna Freire, Venticinque, Eduardo Martins, Manzatto, Angelo Gilberto, Reis, Neidiane Farias Costa, Terborgh, John, Casula, Katia Regina, Costa, Flávia R.C., Honorio Coronado, Euridice N., Monteagudo Mendoza, Abel, Montero, Juan Carlos, Feldpausch, Ted R., Aymard C, Gerardo A., Baraloto, Chris, Castaño Arboleda, Nicolás, Engel, Julien, Petronelli, Pascal, Zartman, Charles Eugene, Killeen, Timothy J., Rincón, Lorena Maniguaje, Marimon, Beatriz S., Marimon-Junior, Ben Hur, Schietti, Juliana, Sousa, Thaiane R., Vasquez, Rodolfo, Mostacedo, Bonifacio, Dantas do Amaral, Dário, Castellanos, Hernán, Medeiros, Marcelo Brilhante de, Simon, Marcelo Fragomeni, Andrade, Ana, Camargo, José Luís, Laurance, William F., Laurance, Susan G.W., Farias, Emanuelle de Sousa, Lopes, Maria Aparecida, Magalhães, José Leonardo Lima, Mendonça Nascimento, Henrique Eduardo, Queiroz, Helder Lima de, Brienen, Roel, Stevenson, Pablo R., Araujo-Murakami, Alejandro, Baker, Tim R., Cintra, Bruno Barçante Ladvocat, Feitosa, Yuri Oliveira, Mogollón, Hugo F., Noronha, Janaína Costa, Barbosa, Flávia Rodrigues, de Sá Carpanedo, Rainiellen, Duivenvoorden, Joost F., Silman, Miles R., Ferreira, Leandro Valle, Levis, Carolina, Lozada, José Rafael, Comiskey, James A., Draper, Freddie C., Toledo, José Julio de, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Vicentini, Alberto, Cornejo Valverde, Fernando, Alonso, Alfonso, Arroyo, Luzmila, Dallmeier, Francisco, Gomes, Vitor H.F., Jimenez, Eliana M., Neill, David, Peñuela Mora, Maria Cristina, Carvalho, Fernanda Antunes, Coelho de Souza, Fernanda, Feeley, Kenneth J., Gribel, Rogerio, Pansonato, Marcelo Petratti, Ríos Paredes, Marcos, Barlow, Jos, Berenguer, Erika, Dexter, Kyle G., Ferreira, Joice, Fine, Paul V.A., Guedes, Marcelino Carneiro, Huamantupa-Chuquimaco, Isau, Licona, Juan Carlos, Pennington, Toby, Villa Zegarra, Boris Eduardo, Vos, Vincent Antoine, Cerón, Carlos, Fonty, Émile, Henkel, Terry W., Maas, Paul, Pos, Edwin, Silveira, Marcos, Stropp, Juliana, Thomas, Raquel, Daly, Doug, Milliken, William, Pardo Molina, Guido, Vieira, Ima Célia Guimarães, Albuquerque, Bianca Weiss, Campelo, Wegliane, Emilio, Thaise, Fuentes, Alfredo, Klitgaard, Bente, Marcelo Pena, José Luis, Souza, Priscila F., Tello, J. Sebastián, Vriesendorp, Corine, Chave, Jerome, Di Fiore, Anthony, Hilário, Renato Richard, Pereira, Luciana de Oliveira, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, van Andel, Tinde R., von Hildebrand, Patricio, Balee, William, Barbosa, Edelcilio Marques, Bonates, Luiz Carlos de Matos, Doza, Hilda Paulette Dávila, Gómez, Ricardo Zárate, Gonzales, Therany, Gonzales, George Pepe Gallardo, Hoffman, Bruce, Junqueira, André Braga, Malhi, Yadvinder, Miranda, Ires Paula de Andrade, Mozombite-Pinto, Linder Felipe, Prieto, Adriana, Rudas, Agustín, Ruschel, Ademir R., Silva, Natalino, Vela, César I.A., Zent, Stanford, Zent, Egleé L., Cano, Angela, Carrero Márquez, Yrma Andreina, Correa, Diego F., Costa, Janaina Barbosa Pedrosa, Flores, Bernardo Monteiro, Galbraith, David, Holmgren, Milena, Kalamandeen, Michelle, Nascimento, Marcelo Trindade, Oliveira, Alexandre A., Ramirez-Angulo, Hirma, Rocha, Maira, Scudeller, Veridiana Vizoni, Sierra, Rodrigo, Tirado, Milton, Umaña, Maria Natalia, van der Heijden, Geertje, Vilanova Torre, Emilio, Ahuite Reategui, Manuel Augusto, Baider, Cláudia, Balslev, Henrik, Cárdenas, Sasha, Casas, Luisa Fernanda, Farfan-Rios, William, Ferreira, Cid, Linares-Palomino, Reynaldo, Mendoza, Casimiro, Mesones, Italo, Parada, Germaine Alexander, Torres-Lezama, Armando, Urrego Giraldo, Ligia Estela, Villarroel, Daniel, Zagt, Roderick, Alexiades, Miguel N., de Oliveira, Edmar Almeida, Garcia-Cabrera, Karina, Hernandez, Lionel, Palacios Cuenca, Walter, Pansini, Susamar, Pauletto, Daniela, Ramirez Arevalo, Freddy, Sampaio, Adeilza Felipe, Valderrama Sandoval, Elvis H., Valenzuela Gamarra, Luis, and ter Steege, Hans
Published: 2024

2. Correction to: One sixth of Amazonian tree diversity is dependent on river floodplains (Nature Ecology & Evolution, (2024), 10.1038/s41559-024-02364-1)

Author: Sub Ecology and Biodiversity, Ecology and Biodiversity, Householder, John Ethan, Wittmann, Florian, Schöngart, Jochen, Piedade, Maria Teresa Fernandez, Junk, Wolfgang J., Latrubesse, Edgardo Manuel, Quaresma, Adriano Costa, Demarchi, Layon O., de S. Lobo, Guilherme, Aguiar, Daniel P.P.de, Assis, Rafael L., Lopes, Aline, Parolin, Pia, Leão do Amaral, Iêda, Coelho, Luiz de Souza, de Almeida Matos, Francisca Dionízia, Lima Filho, Diógenes de Andrade, Salomão, Rafael P., Castilho, Carolina V., Guevara-Andino, Juan Ernesto, Carim, Marcelo de Jesus Veiga, Phillips, Oliver L., Cárdenas López, Dairon, Magnusson, William E., Sabatier, Daniel, Revilla, Juan David Cardenas, Molino, Jean François, Irume, Mariana Victória, Martins, Maria Pires, Guimarães, José Renan da Silva, Ramos, José Ferreira, Rodrigues, Domingos de Jesus, Bánki, Olaf S., Peres, Carlos A., Pitman, Nigel C.A., Hawes, Joseph E., Almeida, Everton José, Barbosa, Luciane Ferreira, Cavalheiro, Larissa, dos Santos, Márcia Cléia Vilela, Luize, Bruno Garcia, Novo, Evlyn Márcia Moraes de Leão, Núñez Vargas, Percy, Silva, Thiago Sanna Freire, Venticinque, Eduardo Martins, Manzatto, Angelo Gilberto, Reis, Neidiane Farias Costa, Terborgh, John, Casula, Katia Regina, Costa, Flávia R.C., Honorio Coronado, Euridice N., Monteagudo Mendoza, Abel, Montero, Juan Carlos, Feldpausch, Ted R., Aymard C, Gerardo A., Baraloto, Chris, Castaño Arboleda, Nicolás, Engel, Julien, Petronelli, Pascal, Zartman, Charles Eugene, Killeen, Timothy J., Rincón, Lorena Maniguaje, Marimon, Beatriz S., Marimon-Junior, Ben Hur, Schietti, Juliana, Sousa, Thaiane R., Vasquez, Rodolfo, Mostacedo, Bonifacio, Dantas do Amaral, Dário, Castellanos, Hernán, Medeiros, Marcelo Brilhante de, Simon, Marcelo Fragomeni, Andrade, Ana, Camargo, José Luís, Laurance, William F., Laurance, Susan G.W., Farias, Emanuelle de Sousa, Lopes, Maria Aparecida, Magalhães, José Leonardo Lima, Mendonça Nascimento, Henrique Eduardo, Queiroz, Helder Lima de, Brienen, Roel, Stevenson, Pablo R., Araujo-Murakami, Alejandro, Baker, Tim R., Cintra, Bruno Barçante Ladvocat, Feitosa, Yuri Oliveira, Mogollón, Hugo F., Noronha, Janaína Costa, Barbosa, Flávia Rodrigues, de Sá Carpanedo, Rainiellen, Duivenvoorden, Joost F., Silman, Miles R., Ferreira, Leandro Valle, Levis, Carolina, Lozada, José Rafael, Comiskey, James A., Draper, Freddie C., Toledo, José Julio de, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Vicentini, Alberto, Cornejo Valverde, Fernando, Alonso, Alfonso, Arroyo, Luzmila, Dallmeier, Francisco, Gomes, Vitor H.F., Jimenez, Eliana M., Neill, David, Peñuela Mora, Maria Cristina, Carvalho, Fernanda Antunes, Coelho de Souza, Fernanda, Feeley, Kenneth J., Gribel, Rogerio, Pansonato, Marcelo Petratti, Ríos Paredes, Marcos, Barlow, Jos, Berenguer, Erika, Dexter, Kyle G., Ferreira, Joice, Fine, Paul V.A., Guedes, Marcelino Carneiro, Huamantupa-Chuquimaco, Isau, Licona, Juan Carlos, Pennington, Toby, Villa Zegarra, Boris Eduardo, Vos, Vincent Antoine, Cerón, Carlos, Fonty, Émile, Henkel, Terry W., Maas, Paul, Pos, Edwin, Silveira, Marcos, Stropp, Juliana, Thomas, Raquel, Daly, Doug, Milliken, William, Pardo Molina, Guido, Vieira, Ima Célia Guimarães, Albuquerque, Bianca Weiss, Campelo, Wegliane, Emilio, Thaise, Fuentes, Alfredo, Klitgaard, Bente, Marcelo Pena, José Luis, Souza, Priscila F., Tello, J. Sebastián, Vriesendorp, Corine, Chave, Jerome, Di Fiore, Anthony, Hilário, Renato Richard, Pereira, Luciana de Oliveira, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, van Andel, Tinde R., von Hildebrand, Patricio, Balee, William, Barbosa, Edelcilio Marques, Bonates, Luiz Carlos de Matos, Doza, Hilda Paulette Dávila, Gómez, Ricardo Zárate, Gonzales, Therany, Gonzales, George Pepe Gallardo, Hoffman, Bruce, Junqueira, André Braga, Malhi, Yadvinder, Miranda, Ires Paula de Andrade, Mozombite-Pinto, Linder Felipe, Prieto, Adriana, Rudas, Agustín, Ruschel, Ademir R., Silva, Natalino, Vela, César I.A., Zent, Stanford, Zent, Egleé L., Cano, Angela, Carrero Márquez, Yrma Andreina, Correa, Diego F., Costa, Janaina Barbosa Pedrosa, Flores, Bernardo Monteiro, Galbraith, David, Holmgren, Milena, Kalamandeen, Michelle, Nascimento, Marcelo Trindade, Oliveira, Alexandre A., Ramirez-Angulo, Hirma, Rocha, Maira, Scudeller, Veridiana Vizoni, Sierra, Rodrigo, Tirado, Milton, Umaña, Maria Natalia, van der Heijden, Geertje, Vilanova Torre, Emilio, Ahuite Reategui, Manuel Augusto, Baider, Cláudia, Balslev, Henrik, Cárdenas, Sasha, Casas, Luisa Fernanda, Farfan-Rios, William, Ferreira, Cid, Linares-Palomino, Reynaldo, Mendoza, Casimiro, Mesones, Italo, Parada, Germaine Alexander, Torres-Lezama, Armando, Urrego Giraldo, Ligia Estela, Villarroel, Daniel, Zagt, Roderick, Alexiades, Miguel N., de Oliveira, Edmar Almeida, Garcia-Cabrera, Karina, Hernandez, Lionel, Palacios Cuenca, Walter, Pansini, Susamar, Pauletto, Daniela, Ramirez Arevalo, Freddy, Sampaio, Adeilza Felipe, Valderrama Sandoval, Elvis H., Valenzuela Gamarra, Luis, ter Steege, Hans, Sub Ecology and Biodiversity, Ecology and Biodiversity, Householder, John Ethan, Wittmann, Florian, Schöngart, Jochen, Piedade, Maria Teresa Fernandez, Junk, Wolfgang J., Latrubesse, Edgardo Manuel, Quaresma, Adriano Costa, Demarchi, Layon O., de S. Lobo, Guilherme, Aguiar, Daniel P.P.de, Assis, Rafael L., Lopes, Aline, Parolin, Pia, Leão do Amaral, Iêda, Coelho, Luiz de Souza, de Almeida Matos, Francisca Dionízia, Lima Filho, Diógenes de Andrade, Salomão, Rafael P., Castilho, Carolina V., Guevara-Andino, Juan Ernesto, Carim, Marcelo de Jesus Veiga, Phillips, Oliver L., Cárdenas López, Dairon, Magnusson, William E., Sabatier, Daniel, Revilla, Juan David Cardenas, Molino, Jean François, Irume, Mariana Victória, Martins, Maria Pires, Guimarães, José Renan da Silva, Ramos, José Ferreira, Rodrigues, Domingos de Jesus, Bánki, Olaf S., Peres, Carlos A., Pitman, Nigel C.A., Hawes, Joseph E., Almeida, Everton José, Barbosa, Luciane Ferreira, Cavalheiro, Larissa, dos Santos, Márcia Cléia Vilela, Luize, Bruno Garcia, Novo, Evlyn Márcia Moraes de Leão, Núñez Vargas, Percy, Silva, Thiago Sanna Freire, Venticinque, Eduardo Martins, Manzatto, Angelo Gilberto, Reis, Neidiane Farias Costa, Terborgh, John, Casula, Katia Regina, Costa, Flávia R.C., Honorio Coronado, Euridice N., Monteagudo Mendoza, Abel, Montero, Juan Carlos, Feldpausch, Ted R., Aymard C, Gerardo A., Baraloto, Chris, Castaño Arboleda, Nicolás, Engel, Julien, Petronelli, Pascal, Zartman, Charles Eugene, Killeen, Timothy J., Rincón, Lorena Maniguaje, Marimon, Beatriz S., Marimon-Junior, Ben Hur, Schietti, Juliana, Sousa, Thaiane R., Vasquez, Rodolfo, Mostacedo, Bonifacio, Dantas do Amaral, Dário, Castellanos, Hernán, Medeiros, Marcelo Brilhante de, Simon, Marcelo Fragomeni, Andrade, Ana, Camargo, José Luís, Laurance, William F., Laurance, Susan G.W., Farias, Emanuelle de Sousa, Lopes, Maria Aparecida, Magalhães, José Leonardo Lima, Mendonça Nascimento, Henrique Eduardo, Queiroz, Helder Lima de, Brienen, Roel, Stevenson, Pablo R., Araujo-Murakami, Alejandro, Baker, Tim R., Cintra, Bruno Barçante Ladvocat, Feitosa, Yuri Oliveira, Mogollón, Hugo F., Noronha, Janaína Costa, Barbosa, Flávia Rodrigues, de Sá Carpanedo, Rainiellen, Duivenvoorden, Joost F., Silman, Miles R., Ferreira, Leandro Valle, Levis, Carolina, Lozada, José Rafael, Comiskey, James A., Draper, Freddie C., Toledo, José Julio de, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Vicentini, Alberto, Cornejo Valverde, Fernando, Alonso, Alfonso, Arroyo, Luzmila, Dallmeier, Francisco, Gomes, Vitor H.F., Jimenez, Eliana M., Neill, David, Peñuela Mora, Maria Cristina, Carvalho, Fernanda Antunes, Coelho de Souza, Fernanda, Feeley, Kenneth J., Gribel, Rogerio, Pansonato, Marcelo Petratti, Ríos Paredes, Marcos, Barlow, Jos, Berenguer, Erika, Dexter, Kyle G., Ferreira, Joice, Fine, Paul V.A., Guedes, Marcelino Carneiro, Huamantupa-Chuquimaco, Isau, Licona, Juan Carlos, Pennington, Toby, Villa Zegarra, Boris Eduardo, Vos, Vincent Antoine, Cerón, Carlos, Fonty, Émile, Henkel, Terry W., Maas, Paul, Pos, Edwin, Silveira, Marcos, Stropp, Juliana, Thomas, Raquel, Daly, Doug, Milliken, William, Pardo Molina, Guido, Vieira, Ima Célia Guimarães, Albuquerque, Bianca Weiss, Campelo, Wegliane, Emilio, Thaise, Fuentes, Alfredo, Klitgaard, Bente, Marcelo Pena, José Luis, Souza, Priscila F., Tello, J. Sebastián, Vriesendorp, Corine, Chave, Jerome, Di Fiore, Anthony, Hilário, Renato Richard, Pereira, Luciana de Oliveira, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, van Andel, Tinde R., von Hildebrand, Patricio, Balee, William, Barbosa, Edelcilio Marques, Bonates, Luiz Carlos de Matos, Doza, Hilda Paulette Dávila, Gómez, Ricardo Zárate, Gonzales, Therany, Gonzales, George Pepe Gallardo, Hoffman, Bruce, Junqueira, André Braga, Malhi, Yadvinder, Miranda, Ires Paula de Andrade, Mozombite-Pinto, Linder Felipe, Prieto, Adriana, Rudas, Agustín, Ruschel, Ademir R., Silva, Natalino, Vela, César I.A., Zent, Stanford, Zent, Egleé L., Cano, Angela, Carrero Márquez, Yrma Andreina, Correa, Diego F., Costa, Janaina Barbosa Pedrosa, Flores, Bernardo Monteiro, Galbraith, David, Holmgren, Milena, Kalamandeen, Michelle, Nascimento, Marcelo Trindade, Oliveira, Alexandre A., Ramirez-Angulo, Hirma, Rocha, Maira, Scudeller, Veridiana Vizoni, Sierra, Rodrigo, Tirado, Milton, Umaña, Maria Natalia, van der Heijden, Geertje, Vilanova Torre, Emilio, Ahuite Reategui, Manuel Augusto, Baider, Cláudia, Balslev, Henrik, Cárdenas, Sasha, Casas, Luisa Fernanda, Farfan-Rios, William, Ferreira, Cid, Linares-Palomino, Reynaldo, Mendoza, Casimiro, Mesones, Italo, Parada, Germaine Alexander, Torres-Lezama, Armando, Urrego Giraldo, Ligia Estela, Villarroel, Daniel, Zagt, Roderick, Alexiades, Miguel N., de Oliveira, Edmar Almeida, Garcia-Cabrera, Karina, Hernandez, Lionel, Palacios Cuenca, Walter, Pansini, Susamar, Pauletto, Daniela, Ramirez Arevalo, Freddy, Sampaio, Adeilza Felipe, Valderrama Sandoval, Elvis H., Valenzuela Gamarra, Luis, and ter Steege, Hans
Published: 2024

3. Species distribution modelling: contrasting presence-only models with plot abundance data

Author: Gomes, Vitor H.F., IJff, Stéphanie D., Raes, Niels, Amaral, Iêda Leão, Salomão, Rafael P., de Souza Coelho, Luiz, de Almeida Matos, Francisca Dionízia, Castilho, Carolina V., de Andrade Lima Filho, Diogenes, López, Dairon Cárdenas, Guevara, Juan Ernesto, Magnusson, William E., Phillips, Oliver L., Wittmann, Florian, de Jesus Veiga Carim, Marcelo, Martins, Maria Pires, Irume, Mariana Victória, Sabatier, Daniel, Molino, Jean-François, Bánki, Olaf S., da Silva Guimarães, José Renan, Pitman, Nigel C.A., Piedade, Maria Teresa Fernandez, Mendoza, Abel Monteagudo, Luize, Bruno Garcia, Venticinque, Eduardo Martins, de Leão Novo, Evlyn Márcia Moraes, Vargas, Percy Núñez, Silva, Thiago Sanna Freire, Manzatto, Angelo Gilberto, Terborgh, John, Reis, Neidiane Farias Costa, Montero, Juan Carlos, Casula, Katia Regina, Marimon, Beatriz S., Marimon, Ben-Hur, Coronado, Euridice N. Honorio, Feldpausch, Ted R., Duque, Alvaro, Zartman, Charles Eugene, Arboleda, Nicolás Castaño, Killeen, Timothy J., Mostacedo, Bonifacio, Vasquez, Rodolfo, Schöngart, Jochen, Assis, Rafael L., Medeiros, Marcelo Brilhante, Simon, Marcelo Fragomeni, Andrade, Ana, Laurance, William F., Camargo, José Luís, Demarchi, Layon O., Laurance, Susan G.W., de Sousa Farias, Emanuelle, Nascimento, Henrique Eduardo Mendonça, Revilla, Juan David Cardenas, Quaresma, Adriano, Costa, Flávia R.C., Vieira, Ima Célia Guimarães, Cintra, Bruno Barçante Ladvocat, Castellanos, Hernán, Brienen, Roel, Stevenson, Pablo R., Feitosa, Yuri, Duivenvoorden, Joost F., Aymard C., Gerardo A., Mogollón, Hugo F., Targhetta, Natalia, Comiskey, James A., Vicentini, Alberto, Lopes, Aline, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Levis, Carolina, Schietti, Juliana, Souza, Priscila, Emilio, Thaise, Alonso, Alfonso, Neill, David, Dallmeier, Francisco, Ferreira, Leandro Valle, Araujo-Murakami, Alejandro, Praia, Daniel, do Amaral, Dário Dantas, Carvalho, Fernanda Antunes, de Souza, Fernanda Coelho, Feeley, Kenneth, Arroyo, Luzmila, Pansonato, Marcelo Petratti, Gribel, Rogerio, Villa, Boris, Licona, Juan Carlos, Fine, Paul V.A., Cerón, Carlos, Baraloto, Chris, Jimenez, Eliana M., Stropp, Juliana, Engel, Julien, Silveira, Marcos, Mora, Maria Cristina Peñuela, Petronelli, Pascal, Maas, Paul, Thomas-Caesar, Raquel, Henkel, Terry W., Daly, Doug, Paredes, Marcos Ríos, Baker, Tim R., Fuentes, Alfredo, Peres, Carlos A., Chave, Jerome, Pena, Jose Luis Marcelo, Dexter, Kyle G., Silman, Miles R., Jørgensen, Peter Møller, Pennington, Toby, Di Fiore, Anthony, Valverde, Fernando Cornejo, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, von Hildebrand, Patricio, van Andel, Tinde R., Ruschel, Ademir R., Prieto, Adriana, Rudas, Agustín, Hoffman, Bruce, Vela, César I. A., Barbosa, Edelcilio Marques, Zent, Egleé L., Gonzales, George Pepe Gallardo, Doza, Hilda Paulette Dávila, de Andrade Miranda, Ires Paula, Guillaumet, Jean-Louis, Pinto, Linder Felipe Mozombite, de Matos Bonates, Luiz Carlos, Silva, Natalino, Gómez, Ricardo Zárate, Zent, Stanford, Gonzales, Therany, Vos, Vincent A., Malhi, Yadvinder, Oliveira, Alexandre A., Cano, Angela, Albuquerque, Bianca Weiss, Vriesendorp, Corine, Correa, Diego Felipe, Torre, Emilio Vilanova, van der Heijden, Geertje, Ramirez-Angulo, Hirma, Ramos, José Ferreira, Young, Kenneth R., Rocha, Maira, Nascimento, Marcelo Trindade, Medina, Maria Natalia Umaña, Tirado, Milton, Wang, Ophelia, Sierra, Rodrigo, Torres-Lezama, Armando, Mendoza, Casimiro, Ferreira, Cid, Baider, Cláudia, Villarroel, Daniel, Balslev, Henrik, Mesones, Italo, Giraldo, Ligia Estela Urrego, Casas, Luisa Fernanda, Reategui, Manuel Augusto Ahuite, Linares-Palomino, Reynaldo, Zagt, Roderick, Cárdenas, Sasha, Farfan-Rios, William, Sampaio, Adeilza Felipe, Pauletto, Daniela, Sandoval, Elvis H. Valderrama, Arevalo, Freddy Ramirez, Huamantupa-Chuquimaco, Isau, Garcia-Cabrera, Karina, Hernandez, Lionel, Gamarra, Luis Valenzuela, Alexiades, Miguel N., Pansini, Susamar, Cuenca, Walter Palacios, Milliken, William, Ricardo, Joana, Lopez-Gonzalez, Gabriela, Pos, Edwin, ter Steege, Hans, Gomes, Vitor H.F., IJff, Stéphanie D., Raes, Niels, Amaral, Iêda Leão, Salomão, Rafael P., de Souza Coelho, Luiz, de Almeida Matos, Francisca Dionízia, Castilho, Carolina V., de Andrade Lima Filho, Diogenes, López, Dairon Cárdenas, Guevara, Juan Ernesto, Magnusson, William E., Phillips, Oliver L., Wittmann, Florian, de Jesus Veiga Carim, Marcelo, Martins, Maria Pires, Irume, Mariana Victória, Sabatier, Daniel, Molino, Jean-François, Bánki, Olaf S., da Silva Guimarães, José Renan, Pitman, Nigel C.A., Piedade, Maria Teresa Fernandez, Mendoza, Abel Monteagudo, Luize, Bruno Garcia, Venticinque, Eduardo Martins, de Leão Novo, Evlyn Márcia Moraes, Vargas, Percy Núñez, Silva, Thiago Sanna Freire, Manzatto, Angelo Gilberto, Terborgh, John, Reis, Neidiane Farias Costa, Montero, Juan Carlos, Casula, Katia Regina, Marimon, Beatriz S., Marimon, Ben-Hur, Coronado, Euridice N. Honorio, Feldpausch, Ted R., Duque, Alvaro, Zartman, Charles Eugene, Arboleda, Nicolás Castaño, Killeen, Timothy J., Mostacedo, Bonifacio, Vasquez, Rodolfo, Schöngart, Jochen, Assis, Rafael L., Medeiros, Marcelo Brilhante, Simon, Marcelo Fragomeni, Andrade, Ana, Laurance, William F., Camargo, José Luís, Demarchi, Layon O., Laurance, Susan G.W., de Sousa Farias, Emanuelle, Nascimento, Henrique Eduardo Mendonça, Revilla, Juan David Cardenas, Quaresma, Adriano, Costa, Flávia R.C., Vieira, Ima Célia Guimarães, Cintra, Bruno Barçante Ladvocat, Castellanos, Hernán, Brienen, Roel, Stevenson, Pablo R., Feitosa, Yuri, Duivenvoorden, Joost F., Aymard C., Gerardo A., Mogollón, Hugo F., Targhetta, Natalia, Comiskey, James A., Vicentini, Alberto, Lopes, Aline, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Levis, Carolina, Schietti, Juliana, Souza, Priscila, Emilio, Thaise, Alonso, Alfonso, Neill, David, Dallmeier, Francisco, Ferreira, Leandro Valle, Araujo-Murakami, Alejandro, Praia, Daniel, do Amaral, Dário Dantas, Carvalho, Fernanda Antunes, de Souza, Fernanda Coelho, Feeley, Kenneth, Arroyo, Luzmila, Pansonato, Marcelo Petratti, Gribel, Rogerio, Villa, Boris, Licona, Juan Carlos, Fine, Paul V.A., Cerón, Carlos, Baraloto, Chris, Jimenez, Eliana M., Stropp, Juliana, Engel, Julien, Silveira, Marcos, Mora, Maria Cristina Peñuela, Petronelli, Pascal, Maas, Paul, Thomas-Caesar, Raquel, Henkel, Terry W., Daly, Doug, Paredes, Marcos Ríos, Baker, Tim R., Fuentes, Alfredo, Peres, Carlos A., Chave, Jerome, Pena, Jose Luis Marcelo, Dexter, Kyle G., Silman, Miles R., Jørgensen, Peter Møller, Pennington, Toby, Di Fiore, Anthony, Valverde, Fernando Cornejo, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, von Hildebrand, Patricio, van Andel, Tinde R., Ruschel, Ademir R., Prieto, Adriana, Rudas, Agustín, Hoffman, Bruce, Vela, César I. A., Barbosa, Edelcilio Marques, Zent, Egleé L., Gonzales, George Pepe Gallardo, Doza, Hilda Paulette Dávila, de Andrade Miranda, Ires Paula, Guillaumet, Jean-Louis, Pinto, Linder Felipe Mozombite, de Matos Bonates, Luiz Carlos, Silva, Natalino, Gómez, Ricardo Zárate, Zent, Stanford, Gonzales, Therany, Vos, Vincent A., Malhi, Yadvinder, Oliveira, Alexandre A., Cano, Angela, Albuquerque, Bianca Weiss, Vriesendorp, Corine, Correa, Diego Felipe, Torre, Emilio Vilanova, van der Heijden, Geertje, Ramirez-Angulo, Hirma, Ramos, José Ferreira, Young, Kenneth R., Rocha, Maira, Nascimento, Marcelo Trindade, Medina, Maria Natalia Umaña, Tirado, Milton, Wang, Ophelia, Sierra, Rodrigo, Torres-Lezama, Armando, Mendoza, Casimiro, Ferreira, Cid, Baider, Cláudia, Villarroel, Daniel, Balslev, Henrik, Mesones, Italo, Giraldo, Ligia Estela Urrego, Casas, Luisa Fernanda, Reategui, Manuel Augusto Ahuite, Linares-Palomino, Reynaldo, Zagt, Roderick, Cárdenas, Sasha, Farfan-Rios, William, Sampaio, Adeilza Felipe, Pauletto, Daniela, Sandoval, Elvis H. Valderrama, Arevalo, Freddy Ramirez, Huamantupa-Chuquimaco, Isau, Garcia-Cabrera, Karina, Hernandez, Lionel, Gamarra, Luis Valenzuela, Alexiades, Miguel N., Pansini, Susamar, Cuenca, Walter Palacios, Milliken, William, Ricardo, Joana, Lopez-Gonzalez, Gabriela, Pos, Edwin, and ter Steege, Hans
Abstract: Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and MaxEnt predictions relates to a spatial abundance model, based on a large plot dataset for Amazonian tree species, using inverse distance weighting (IDW). We also propose a new pipeline to deal with inconsistencies in NHCs and to limit the area of occupancy of the species. We found a significant but weak positive relationship between the distribution of NHCs and IDW for 66% of the species. The relationship between SDMs and IDW was also significant but weakly positive for 95% of the species, and sensitivity for both analyses was high. Furthermore, the pipeline removed half of the NHCs records. Presence-only SDM applications should consider this limitation, especially for large biodiversity assessments projects, when they are automatically generated without subsequent checking. Our pipeline provides a conservative estimate of a species’ area of occupancy, within an area slightly larger than its extent of occurrence, compatible to e.g. IUCN red list assessments.
Full Text: View/download PDF

4. Species distribution modelling: contrasting presence-only models with plot abundance data

Author: Gomes, Vitor H.F., IJff, Stéphanie D., Raes, Niels, Amaral, Iêda Leão, Salomão, Rafael P., de Souza Coelho, Luiz, de Almeida Matos, Francisca Dionízia, Castilho, Carolina V., de Andrade Lima Filho, Diogenes, López, Dairon Cárdenas, Guevara, Juan Ernesto, Magnusson, William E., Phillips, Oliver L., Wittmann, Florian, de Jesus Veiga Carim, Marcelo, Martins, Maria Pires, Irume, Mariana Victória, Sabatier, Daniel, Molino, Jean-François, Bánki, Olaf S., da Silva Guimarães, José Renan, Pitman, Nigel C.A., Piedade, Maria Teresa Fernandez, Mendoza, Abel Monteagudo, Luize, Bruno Garcia, Venticinque, Eduardo Martins, de Leão Novo, Evlyn Márcia Moraes, Vargas, Percy Núñez, Silva, Thiago Sanna Freire, Manzatto, Angelo Gilberto, Terborgh, John, Reis, Neidiane Farias Costa, Montero, Juan Carlos, Casula, Katia Regina, Marimon, Beatriz S., Marimon, Ben-Hur, Coronado, Euridice N. Honorio, Feldpausch, Ted R., Duque, Alvaro, Zartman, Charles Eugene, Arboleda, Nicolás Castaño, Killeen, Timothy J., Mostacedo, Bonifacio, Vasquez, Rodolfo, Schöngart, Jochen, Assis, Rafael L., Medeiros, Marcelo Brilhante, Simon, Marcelo Fragomeni, Andrade, Ana, Laurance, William F., Camargo, José Luís, Demarchi, Layon O., Laurance, Susan G.W., de Sousa Farias, Emanuelle, Nascimento, Henrique Eduardo Mendonça, Revilla, Juan David Cardenas, Quaresma, Adriano, Costa, Flávia R.C., Vieira, Ima Célia Guimarães, Cintra, Bruno Barçante Ladvocat, Castellanos, Hernán, Brienen, Roel, Stevenson, Pablo R., Feitosa, Yuri, Duivenvoorden, Joost F., Aymard C., Gerardo A., Mogollón, Hugo F., Targhetta, Natalia, Comiskey, James A., Vicentini, Alberto, Lopes, Aline, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Levis, Carolina, Schietti, Juliana, Souza, Priscila, Emilio, Thaise, Alonso, Alfonso, Neill, David, Dallmeier, Francisco, Ferreira, Leandro Valle, Araujo-Murakami, Alejandro, Praia, Daniel, do Amaral, Dário Dantas, Carvalho, Fernanda Antunes, de Souza, Fernanda Coelho, Feeley, Kenneth, Arroyo, Luzmila, Pansonato, Marcelo Petratti, Gribel, Rogerio, Villa, Boris, Licona, Juan Carlos, Fine, Paul V.A., Cerón, Carlos, Baraloto, Chris, Jimenez, Eliana M., Stropp, Juliana, Engel, Julien, Silveira, Marcos, Mora, Maria Cristina Peñuela, Petronelli, Pascal, Maas, Paul, Thomas-Caesar, Raquel, Henkel, Terry W., Daly, Doug, Paredes, Marcos Ríos, Baker, Tim R., Fuentes, Alfredo, Peres, Carlos A., Chave, Jerome, Pena, Jose Luis Marcelo, Dexter, Kyle G., Silman, Miles R., Jørgensen, Peter Møller, Pennington, Toby, Di Fiore, Anthony, Valverde, Fernando Cornejo, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, von Hildebrand, Patricio, van Andel, Tinde R., Ruschel, Ademir R., Prieto, Adriana, Rudas, Agustín, Hoffman, Bruce, Vela, César I. A., Barbosa, Edelcilio Marques, Zent, Egleé L., Gonzales, George Pepe Gallardo, Doza, Hilda Paulette Dávila, de Andrade Miranda, Ires Paula, Guillaumet, Jean-Louis, Pinto, Linder Felipe Mozombite, de Matos Bonates, Luiz Carlos, Silva, Natalino, Gómez, Ricardo Zárate, Zent, Stanford, Gonzales, Therany, Vos, Vincent A., Malhi, Yadvinder, Oliveira, Alexandre A., Cano, Angela, Albuquerque, Bianca Weiss, Vriesendorp, Corine, Correa, Diego Felipe, Torre, Emilio Vilanova, van der Heijden, Geertje, Ramirez-Angulo, Hirma, Ramos, José Ferreira, Young, Kenneth R., Rocha, Maira, Nascimento, Marcelo Trindade, Medina, Maria Natalia Umaña, Tirado, Milton, Wang, Ophelia, Sierra, Rodrigo, Torres-Lezama, Armando, Mendoza, Casimiro, Ferreira, Cid, Baider, Cláudia, Villarroel, Daniel, Balslev, Henrik, Mesones, Italo, Giraldo, Ligia Estela Urrego, Casas, Luisa Fernanda, Reategui, Manuel Augusto Ahuite, Linares-Palomino, Reynaldo, Zagt, Roderick, Cárdenas, Sasha, Farfan-Rios, William, Sampaio, Adeilza Felipe, Pauletto, Daniela, Sandoval, Elvis H. Valderrama, Arevalo, Freddy Ramirez, Huamantupa-Chuquimaco, Isau, Garcia-Cabrera, Karina, Hernandez, Lionel, Gamarra, Luis Valenzuela, Alexiades, Miguel N., Pansini, Susamar, Cuenca, Walter Palacios, Milliken, William, Ricardo, Joana, Lopez-Gonzalez, Gabriela, Pos, Edwin, ter Steege, Hans, Gomes, Vitor H.F., IJff, Stéphanie D., Raes, Niels, Amaral, Iêda Leão, Salomão, Rafael P., de Souza Coelho, Luiz, de Almeida Matos, Francisca Dionízia, Castilho, Carolina V., de Andrade Lima Filho, Diogenes, López, Dairon Cárdenas, Guevara, Juan Ernesto, Magnusson, William E., Phillips, Oliver L., Wittmann, Florian, de Jesus Veiga Carim, Marcelo, Martins, Maria Pires, Irume, Mariana Victória, Sabatier, Daniel, Molino, Jean-François, Bánki, Olaf S., da Silva Guimarães, José Renan, Pitman, Nigel C.A., Piedade, Maria Teresa Fernandez, Mendoza, Abel Monteagudo, Luize, Bruno Garcia, Venticinque, Eduardo Martins, de Leão Novo, Evlyn Márcia Moraes, Vargas, Percy Núñez, Silva, Thiago Sanna Freire, Manzatto, Angelo Gilberto, Terborgh, John, Reis, Neidiane Farias Costa, Montero, Juan Carlos, Casula, Katia Regina, Marimon, Beatriz S., Marimon, Ben-Hur, Coronado, Euridice N. Honorio, Feldpausch, Ted R., Duque, Alvaro, Zartman, Charles Eugene, Arboleda, Nicolás Castaño, Killeen, Timothy J., Mostacedo, Bonifacio, Vasquez, Rodolfo, Schöngart, Jochen, Assis, Rafael L., Medeiros, Marcelo Brilhante, Simon, Marcelo Fragomeni, Andrade, Ana, Laurance, William F., Camargo, José Luís, Demarchi, Layon O., Laurance, Susan G.W., de Sousa Farias, Emanuelle, Nascimento, Henrique Eduardo Mendonça, Revilla, Juan David Cardenas, Quaresma, Adriano, Costa, Flávia R.C., Vieira, Ima Célia Guimarães, Cintra, Bruno Barçante Ladvocat, Castellanos, Hernán, Brienen, Roel, Stevenson, Pablo R., Feitosa, Yuri, Duivenvoorden, Joost F., Aymard C., Gerardo A., Mogollón, Hugo F., Targhetta, Natalia, Comiskey, James A., Vicentini, Alberto, Lopes, Aline, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Levis, Carolina, Schietti, Juliana, Souza, Priscila, Emilio, Thaise, Alonso, Alfonso, Neill, David, Dallmeier, Francisco, Ferreira, Leandro Valle, Araujo-Murakami, Alejandro, Praia, Daniel, do Amaral, Dário Dantas, Carvalho, Fernanda Antunes, de Souza, Fernanda Coelho, Feeley, Kenneth, Arroyo, Luzmila, Pansonato, Marcelo Petratti, Gribel, Rogerio, Villa, Boris, Licona, Juan Carlos, Fine, Paul V.A., Cerón, Carlos, Baraloto, Chris, Jimenez, Eliana M., Stropp, Juliana, Engel, Julien, Silveira, Marcos, Mora, Maria Cristina Peñuela, Petronelli, Pascal, Maas, Paul, Thomas-Caesar, Raquel, Henkel, Terry W., Daly, Doug, Paredes, Marcos Ríos, Baker, Tim R., Fuentes, Alfredo, Peres, Carlos A., Chave, Jerome, Pena, Jose Luis Marcelo, Dexter, Kyle G., Silman, Miles R., Jørgensen, Peter Møller, Pennington, Toby, Di Fiore, Anthony, Valverde, Fernando Cornejo, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, von Hildebrand, Patricio, van Andel, Tinde R., Ruschel, Ademir R., Prieto, Adriana, Rudas, Agustín, Hoffman, Bruce, Vela, César I. A., Barbosa, Edelcilio Marques, Zent, Egleé L., Gonzales, George Pepe Gallardo, Doza, Hilda Paulette Dávila, de Andrade Miranda, Ires Paula, Guillaumet, Jean-Louis, Pinto, Linder Felipe Mozombite, de Matos Bonates, Luiz Carlos, Silva, Natalino, Gómez, Ricardo Zárate, Zent, Stanford, Gonzales, Therany, Vos, Vincent A., Malhi, Yadvinder, Oliveira, Alexandre A., Cano, Angela, Albuquerque, Bianca Weiss, Vriesendorp, Corine, Correa, Diego Felipe, Torre, Emilio Vilanova, van der Heijden, Geertje, Ramirez-Angulo, Hirma, Ramos, José Ferreira, Young, Kenneth R., Rocha, Maira, Nascimento, Marcelo Trindade, Medina, Maria Natalia Umaña, Tirado, Milton, Wang, Ophelia, Sierra, Rodrigo, Torres-Lezama, Armando, Mendoza, Casimiro, Ferreira, Cid, Baider, Cláudia, Villarroel, Daniel, Balslev, Henrik, Mesones, Italo, Giraldo, Ligia Estela Urrego, Casas, Luisa Fernanda, Reategui, Manuel Augusto Ahuite, Linares-Palomino, Reynaldo, Zagt, Roderick, Cárdenas, Sasha, Farfan-Rios, William, Sampaio, Adeilza Felipe, Pauletto, Daniela, Sandoval, Elvis H. Valderrama, Arevalo, Freddy Ramirez, Huamantupa-Chuquimaco, Isau, Garcia-Cabrera, Karina, Hernandez, Lionel, Gamarra, Luis Valenzuela, Alexiades, Miguel N., Pansini, Susamar, Cuenca, Walter Palacios, Milliken, William, Ricardo, Joana, Lopez-Gonzalez, Gabriela, Pos, Edwin, and ter Steege, Hans
Abstract: Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and MaxEnt predictions relates to a spatial abundance model, based on a large plot dataset for Amazonian tree species, using inverse distance weighting (IDW). We also propose a new pipeline to deal with inconsistencies in NHCs and to limit the area of occupancy of the species. We found a significant but weak positive relationship between the distribution of NHCs and IDW for 66% of the species. The relationship between SDMs and IDW was also significant but weakly positive for 95% of the species, and sensitivity for both analyses was high. Furthermore, the pipeline removed half of the NHCs records. Presence-only SDM applications should consider this limitation, especially for large biodiversity assessments projects, when they are automatically generated without subsequent checking. Our pipeline provides a conservative estimate of a species’ area of occupancy, within an area slightly larger than its extent of occurrence, compatible to e.g. IUCN red list assessments.
Full Text: View/download PDF

5. Species distribution modelling: contrasting presence-only models with plot abundance data

Author: Gomes, Vitor H.F., IJff, Stéphanie D., Raes, Niels, Amaral, Iêda Leão, Salomão, Rafael P., de Souza Coelho, Luiz, de Almeida Matos, Francisca Dionízia, Castilho, Carolina V., de Andrade Lima Filho, Diogenes, López, Dairon Cárdenas, Guevara, Juan Ernesto, Magnusson, William E., Phillips, Oliver L., Wittmann, Florian, de Jesus Veiga Carim, Marcelo, Martins, Maria Pires, Irume, Mariana Victória, Sabatier, Daniel, Molino, Jean-François, Bánki, Olaf S., da Silva Guimarães, José Renan, Pitman, Nigel C.A., Piedade, Maria Teresa Fernandez, Mendoza, Abel Monteagudo, Luize, Bruno Garcia, Venticinque, Eduardo Martins, de Leão Novo, Evlyn Márcia Moraes, Vargas, Percy Núñez, Silva, Thiago Sanna Freire, Manzatto, Angelo Gilberto, Terborgh, John, Reis, Neidiane Farias Costa, Montero, Juan Carlos, Casula, Katia Regina, Marimon, Beatriz S., Marimon, Ben-Hur, Coronado, Euridice N. Honorio, Feldpausch, Ted R., Duque, Alvaro, Zartman, Charles Eugene, Arboleda, Nicolás Castaño, Killeen, Timothy J., Mostacedo, Bonifacio, Vasquez, Rodolfo, Schöngart, Jochen, Assis, Rafael L., Medeiros, Marcelo Brilhante, Simon, Marcelo Fragomeni, Andrade, Ana, Laurance, William F., Camargo, José Luís, Demarchi, Layon O., Laurance, Susan G.W., de Sousa Farias, Emanuelle, Nascimento, Henrique Eduardo Mendonça, Revilla, Juan David Cardenas, Quaresma, Adriano, Costa, Flávia R.C., Vieira, Ima Célia Guimarães, Cintra, Bruno Barçante Ladvocat, Castellanos, Hernán, Brienen, Roel, Stevenson, Pablo R., Feitosa, Yuri, Duivenvoorden, Joost F., Aymard C., Gerardo A., Mogollón, Hugo F., Targhetta, Natalia, Comiskey, James A., Vicentini, Alberto, Lopes, Aline, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Levis, Carolina, Schietti, Juliana, Souza, Priscila, Emilio, Thaise, Alonso, Alfonso, Neill, David, Dallmeier, Francisco, Ferreira, Leandro Valle, Araujo-Murakami, Alejandro, Praia, Daniel, do Amaral, Dário Dantas, Carvalho, Fernanda Antunes, de Souza, Fernanda Coelho, Feeley, Kenneth, Arroyo, Luzmila, Pansonato, Marcelo Petratti, Gribel, Rogerio, Villa, Boris, Licona, Juan Carlos, Fine, Paul V.A., Cerón, Carlos, Baraloto, Chris, Jimenez, Eliana M., Stropp, Juliana, Engel, Julien, Silveira, Marcos, Mora, Maria Cristina Peñuela, Petronelli, Pascal, Maas, Paul, Thomas-Caesar, Raquel, Henkel, Terry W., Daly, Doug, Paredes, Marcos Ríos, Baker, Tim R., Fuentes, Alfredo, Peres, Carlos A., Chave, Jerome, Pena, Jose Luis Marcelo, Dexter, Kyle G., Silman, Miles R., Jørgensen, Peter Møller, Pennington, Toby, Di Fiore, Anthony, Valverde, Fernando Cornejo, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, von Hildebrand, Patricio, van Andel, Tinde R., Ruschel, Ademir R., Prieto, Adriana, Rudas, Agustín, Hoffman, Bruce, Vela, César I. A., Barbosa, Edelcilio Marques, Zent, Egleé L., Gonzales, George Pepe Gallardo, Doza, Hilda Paulette Dávila, de Andrade Miranda, Ires Paula, Guillaumet, Jean-Louis, Pinto, Linder Felipe Mozombite, de Matos Bonates, Luiz Carlos, Silva, Natalino, Gómez, Ricardo Zárate, Zent, Stanford, Gonzales, Therany, Vos, Vincent A., Malhi, Yadvinder, Oliveira, Alexandre A., Cano, Angela, Albuquerque, Bianca Weiss, Vriesendorp, Corine, Correa, Diego Felipe, Torre, Emilio Vilanova, van der Heijden, Geertje, Ramirez-Angulo, Hirma, Ramos, José Ferreira, Young, Kenneth R., Rocha, Maira, Nascimento, Marcelo Trindade, Medina, Maria Natalia Umaña, Tirado, Milton, Wang, Ophelia, Sierra, Rodrigo, Torres-Lezama, Armando, Mendoza, Casimiro, Ferreira, Cid, Baider, Cláudia, Villarroel, Daniel, Balslev, Henrik, Mesones, Italo, Giraldo, Ligia Estela Urrego, Casas, Luisa Fernanda, Reategui, Manuel Augusto Ahuite, Linares-Palomino, Reynaldo, Zagt, Roderick, Cárdenas, Sasha, Farfan-Rios, William, Sampaio, Adeilza Felipe, Pauletto, Daniela, Sandoval, Elvis H. Valderrama, Arevalo, Freddy Ramirez, Huamantupa-Chuquimaco, Isau, Garcia-Cabrera, Karina, Hernandez, Lionel, Gamarra, Luis Valenzuela, Alexiades, Miguel N., Pansini, Susamar, Cuenca, Walter Palacios, Milliken, William, Ricardo, Joana, Lopez-Gonzalez, Gabriela, Pos, Edwin, ter Steege, Hans, Gomes, Vitor H.F., IJff, Stéphanie D., Raes, Niels, Amaral, Iêda Leão, Salomão, Rafael P., de Souza Coelho, Luiz, de Almeida Matos, Francisca Dionízia, Castilho, Carolina V., de Andrade Lima Filho, Diogenes, López, Dairon Cárdenas, Guevara, Juan Ernesto, Magnusson, William E., Phillips, Oliver L., Wittmann, Florian, de Jesus Veiga Carim, Marcelo, Martins, Maria Pires, Irume, Mariana Victória, Sabatier, Daniel, Molino, Jean-François, Bánki, Olaf S., da Silva Guimarães, José Renan, Pitman, Nigel C.A., Piedade, Maria Teresa Fernandez, Mendoza, Abel Monteagudo, Luize, Bruno Garcia, Venticinque, Eduardo Martins, de Leão Novo, Evlyn Márcia Moraes, Vargas, Percy Núñez, Silva, Thiago Sanna Freire, Manzatto, Angelo Gilberto, Terborgh, John, Reis, Neidiane Farias Costa, Montero, Juan Carlos, Casula, Katia Regina, Marimon, Beatriz S., Marimon, Ben-Hur, Coronado, Euridice N. Honorio, Feldpausch, Ted R., Duque, Alvaro, Zartman, Charles Eugene, Arboleda, Nicolás Castaño, Killeen, Timothy J., Mostacedo, Bonifacio, Vasquez, Rodolfo, Schöngart, Jochen, Assis, Rafael L., Medeiros, Marcelo Brilhante, Simon, Marcelo Fragomeni, Andrade, Ana, Laurance, William F., Camargo, José Luís, Demarchi, Layon O., Laurance, Susan G.W., de Sousa Farias, Emanuelle, Nascimento, Henrique Eduardo Mendonça, Revilla, Juan David Cardenas, Quaresma, Adriano, Costa, Flávia R.C., Vieira, Ima Célia Guimarães, Cintra, Bruno Barçante Ladvocat, Castellanos, Hernán, Brienen, Roel, Stevenson, Pablo R., Feitosa, Yuri, Duivenvoorden, Joost F., Aymard C., Gerardo A., Mogollón, Hugo F., Targhetta, Natalia, Comiskey, James A., Vicentini, Alberto, Lopes, Aline, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Levis, Carolina, Schietti, Juliana, Souza, Priscila, Emilio, Thaise, Alonso, Alfonso, Neill, David, Dallmeier, Francisco, Ferreira, Leandro Valle, Araujo-Murakami, Alejandro, Praia, Daniel, do Amaral, Dário Dantas, Carvalho, Fernanda Antunes, de Souza, Fernanda Coelho, Feeley, Kenneth, Arroyo, Luzmila, Pansonato, Marcelo Petratti, Gribel, Rogerio, Villa, Boris, Licona, Juan Carlos, Fine, Paul V.A., Cerón, Carlos, Baraloto, Chris, Jimenez, Eliana M., Stropp, Juliana, Engel, Julien, Silveira, Marcos, Mora, Maria Cristina Peñuela, Petronelli, Pascal, Maas, Paul, Thomas-Caesar, Raquel, Henkel, Terry W., Daly, Doug, Paredes, Marcos Ríos, Baker, Tim R., Fuentes, Alfredo, Peres, Carlos A., Chave, Jerome, Pena, Jose Luis Marcelo, Dexter, Kyle G., Silman, Miles R., Jørgensen, Peter Møller, Pennington, Toby, Di Fiore, Anthony, Valverde, Fernando Cornejo, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, von Hildebrand, Patricio, van Andel, Tinde R., Ruschel, Ademir R., Prieto, Adriana, Rudas, Agustín, Hoffman, Bruce, Vela, César I. A., Barbosa, Edelcilio Marques, Zent, Egleé L., Gonzales, George Pepe Gallardo, Doza, Hilda Paulette Dávila, de Andrade Miranda, Ires Paula, Guillaumet, Jean-Louis, Pinto, Linder Felipe Mozombite, de Matos Bonates, Luiz Carlos, Silva, Natalino, Gómez, Ricardo Zárate, Zent, Stanford, Gonzales, Therany, Vos, Vincent A., Malhi, Yadvinder, Oliveira, Alexandre A., Cano, Angela, Albuquerque, Bianca Weiss, Vriesendorp, Corine, Correa, Diego Felipe, Torre, Emilio Vilanova, van der Heijden, Geertje, Ramirez-Angulo, Hirma, Ramos, José Ferreira, Young, Kenneth R., Rocha, Maira, Nascimento, Marcelo Trindade, Medina, Maria Natalia Umaña, Tirado, Milton, Wang, Ophelia, Sierra, Rodrigo, Torres-Lezama, Armando, Mendoza, Casimiro, Ferreira, Cid, Baider, Cláudia, Villarroel, Daniel, Balslev, Henrik, Mesones, Italo, Giraldo, Ligia Estela Urrego, Casas, Luisa Fernanda, Reategui, Manuel Augusto Ahuite, Linares-Palomino, Reynaldo, Zagt, Roderick, Cárdenas, Sasha, Farfan-Rios, William, Sampaio, Adeilza Felipe, Pauletto, Daniela, Sandoval, Elvis H. Valderrama, Arevalo, Freddy Ramirez, Huamantupa-Chuquimaco, Isau, Garcia-Cabrera, Karina, Hernandez, Lionel, Gamarra, Luis Valenzuela, Alexiades, Miguel N., Pansini, Susamar, Cuenca, Walter Palacios, Milliken, William, Ricardo, Joana, Lopez-Gonzalez, Gabriela, Pos, Edwin, and ter Steege, Hans
Abstract: Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and MaxEnt predictions relates to a spatial abundance model, based on a large plot dataset for Amazonian tree species, using inverse distance weighting (IDW). We also propose a new pipeline to deal with inconsistencies in NHCs and to limit the area of occupancy of the species. We found a significant but weak positive relationship between the distribution of NHCs and IDW for 66% of the species. The relationship between SDMs and IDW was also significant but weakly positive for 95% of the species, and sensitivity for both analyses was high. Furthermore, the pipeline removed half of the NHCs records. Presence-only SDM applications should consider this limitation, especially for large biodiversity assessments projects, when they are automatically generated without subsequent checking. Our pipeline provides a conservative estimate of a species’ area of occupancy, within an area slightly larger than its extent of occurrence, compatible to e.g. IUCN red list assessments.
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6. Species distribution modelling: contrasting presence-only models with plot abundance data

Author: Gomes, Vitor H.F., IJff, Stéphanie D., Raes, Niels, Amaral, Iêda Leão, Salomão, Rafael P., de Souza Coelho, Luiz, de Almeida Matos, Francisca Dionízia, Castilho, Carolina V., de Andrade Lima Filho, Diogenes, López, Dairon Cárdenas, Guevara, Juan Ernesto, Magnusson, William E., Phillips, Oliver L., Wittmann, Florian, de Jesus Veiga Carim, Marcelo, Martins, Maria Pires, Irume, Mariana Victória, Sabatier, Daniel, Molino, Jean-François, Bánki, Olaf S., da Silva Guimarães, José Renan, Pitman, Nigel C.A., Piedade, Maria Teresa Fernandez, Mendoza, Abel Monteagudo, Luize, Bruno Garcia, Venticinque, Eduardo Martins, de Leão Novo, Evlyn Márcia Moraes, Vargas, Percy Núñez, Silva, Thiago Sanna Freire, Manzatto, Angelo Gilberto, Terborgh, John, Reis, Neidiane Farias Costa, Montero, Juan Carlos, Casula, Katia Regina, Marimon, Beatriz S., Marimon, Ben-Hur, Coronado, Euridice N. Honorio, Feldpausch, Ted R., Duque, Alvaro, Zartman, Charles Eugene, Arboleda, Nicolás Castaño, Killeen, Timothy J., Mostacedo, Bonifacio, Vasquez, Rodolfo, Schöngart, Jochen, Assis, Rafael L., Medeiros, Marcelo Brilhante, Simon, Marcelo Fragomeni, Andrade, Ana, Laurance, William F., Camargo, José Luís, Demarchi, Layon O., Laurance, Susan G.W., de Sousa Farias, Emanuelle, Nascimento, Henrique Eduardo Mendonça, Revilla, Juan David Cardenas, Quaresma, Adriano, Costa, Flávia R.C., Vieira, Ima Célia Guimarães, Cintra, Bruno Barçante Ladvocat, Castellanos, Hernán, Brienen, Roel, Stevenson, Pablo R., Feitosa, Yuri, Duivenvoorden, Joost F., Aymard C., Gerardo A., Mogollón, Hugo F., Targhetta, Natalia, Comiskey, James A., Vicentini, Alberto, Lopes, Aline, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Levis, Carolina, Schietti, Juliana, Souza, Priscila, Emilio, Thaise, Alonso, Alfonso, Neill, David, Dallmeier, Francisco, Ferreira, Leandro Valle, Araujo-Murakami, Alejandro, Praia, Daniel, do Amaral, Dário Dantas, Carvalho, Fernanda Antunes, de Souza, Fernanda Coelho, Feeley, Kenneth, Arroyo, Luzmila, Pansonato, Marcelo Petratti, Gribel, Rogerio, Villa, Boris, Licona, Juan Carlos, Fine, Paul V.A., Cerón, Carlos, Baraloto, Chris, Jimenez, Eliana M., Stropp, Juliana, Engel, Julien, Silveira, Marcos, Mora, Maria Cristina Peñuela, Petronelli, Pascal, Maas, Paul, Thomas-Caesar, Raquel, Henkel, Terry W., Daly, Doug, Paredes, Marcos Ríos, Baker, Tim R., Fuentes, Alfredo, Peres, Carlos A., Chave, Jerome, Pena, Jose Luis Marcelo, Dexter, Kyle G., Silman, Miles R., Jørgensen, Peter Møller, Pennington, Toby, Di Fiore, Anthony, Valverde, Fernando Cornejo, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, von Hildebrand, Patricio, van Andel, Tinde R., Ruschel, Ademir R., Prieto, Adriana, Rudas, Agustín, Hoffman, Bruce, Vela, César I. A., Barbosa, Edelcilio Marques, Zent, Egleé L., Gonzales, George Pepe Gallardo, Doza, Hilda Paulette Dávila, de Andrade Miranda, Ires Paula, Guillaumet, Jean-Louis, Pinto, Linder Felipe Mozombite, de Matos Bonates, Luiz Carlos, Silva, Natalino, Gómez, Ricardo Zárate, Zent, Stanford, Gonzales, Therany, Vos, Vincent A., Malhi, Yadvinder, Oliveira, Alexandre A., Cano, Angela, Albuquerque, Bianca Weiss, Vriesendorp, Corine, Correa, Diego Felipe, Torre, Emilio Vilanova, van der Heijden, Geertje, Ramirez-Angulo, Hirma, Ramos, José Ferreira, Young, Kenneth R., Rocha, Maira, Nascimento, Marcelo Trindade, Medina, Maria Natalia Umaña, Tirado, Milton, Wang, Ophelia, Sierra, Rodrigo, Torres-Lezama, Armando, Mendoza, Casimiro, Ferreira, Cid, Baider, Cláudia, Villarroel, Daniel, Balslev, Henrik, Mesones, Italo, Giraldo, Ligia Estela Urrego, Casas, Luisa Fernanda, Reategui, Manuel Augusto Ahuite, Linares-Palomino, Reynaldo, Zagt, Roderick, Cárdenas, Sasha, Farfan-Rios, William, Sampaio, Adeilza Felipe, Pauletto, Daniela, Sandoval, Elvis H. Valderrama, Arevalo, Freddy Ramirez, Huamantupa-Chuquimaco, Isau, Garcia-Cabrera, Karina, Hernandez, Lionel, Gamarra, Luis Valenzuela, Alexiades, Miguel N., Pansini, Susamar, Cuenca, Walter Palacios, Milliken, William, Ricardo, Joana, Lopez-Gonzalez, Gabriela, Pos, Edwin, ter Steege, Hans, Gomes, Vitor H.F., IJff, Stéphanie D., Raes, Niels, Amaral, Iêda Leão, Salomão, Rafael P., de Souza Coelho, Luiz, de Almeida Matos, Francisca Dionízia, Castilho, Carolina V., de Andrade Lima Filho, Diogenes, López, Dairon Cárdenas, Guevara, Juan Ernesto, Magnusson, William E., Phillips, Oliver L., Wittmann, Florian, de Jesus Veiga Carim, Marcelo, Martins, Maria Pires, Irume, Mariana Victória, Sabatier, Daniel, Molino, Jean-François, Bánki, Olaf S., da Silva Guimarães, José Renan, Pitman, Nigel C.A., Piedade, Maria Teresa Fernandez, Mendoza, Abel Monteagudo, Luize, Bruno Garcia, Venticinque, Eduardo Martins, de Leão Novo, Evlyn Márcia Moraes, Vargas, Percy Núñez, Silva, Thiago Sanna Freire, Manzatto, Angelo Gilberto, Terborgh, John, Reis, Neidiane Farias Costa, Montero, Juan Carlos, Casula, Katia Regina, Marimon, Beatriz S., Marimon, Ben-Hur, Coronado, Euridice N. Honorio, Feldpausch, Ted R., Duque, Alvaro, Zartman, Charles Eugene, Arboleda, Nicolás Castaño, Killeen, Timothy J., Mostacedo, Bonifacio, Vasquez, Rodolfo, Schöngart, Jochen, Assis, Rafael L., Medeiros, Marcelo Brilhante, Simon, Marcelo Fragomeni, Andrade, Ana, Laurance, William F., Camargo, José Luís, Demarchi, Layon O., Laurance, Susan G.W., de Sousa Farias, Emanuelle, Nascimento, Henrique Eduardo Mendonça, Revilla, Juan David Cardenas, Quaresma, Adriano, Costa, Flávia R.C., Vieira, Ima Célia Guimarães, Cintra, Bruno Barçante Ladvocat, Castellanos, Hernán, Brienen, Roel, Stevenson, Pablo R., Feitosa, Yuri, Duivenvoorden, Joost F., Aymard C., Gerardo A., Mogollón, Hugo F., Targhetta, Natalia, Comiskey, James A., Vicentini, Alberto, Lopes, Aline, Damasco, Gabriel, Dávila, Nállarett, García-Villacorta, Roosevelt, Levis, Carolina, Schietti, Juliana, Souza, Priscila, Emilio, Thaise, Alonso, Alfonso, Neill, David, Dallmeier, Francisco, Ferreira, Leandro Valle, Araujo-Murakami, Alejandro, Praia, Daniel, do Amaral, Dário Dantas, Carvalho, Fernanda Antunes, de Souza, Fernanda Coelho, Feeley, Kenneth, Arroyo, Luzmila, Pansonato, Marcelo Petratti, Gribel, Rogerio, Villa, Boris, Licona, Juan Carlos, Fine, Paul V.A., Cerón, Carlos, Baraloto, Chris, Jimenez, Eliana M., Stropp, Juliana, Engel, Julien, Silveira, Marcos, Mora, Maria Cristina Peñuela, Petronelli, Pascal, Maas, Paul, Thomas-Caesar, Raquel, Henkel, Terry W., Daly, Doug, Paredes, Marcos Ríos, Baker, Tim R., Fuentes, Alfredo, Peres, Carlos A., Chave, Jerome, Pena, Jose Luis Marcelo, Dexter, Kyle G., Silman, Miles R., Jørgensen, Peter Møller, Pennington, Toby, Di Fiore, Anthony, Valverde, Fernando Cornejo, Phillips, Juan Fernando, Rivas-Torres, Gonzalo, von Hildebrand, Patricio, van Andel, Tinde R., Ruschel, Ademir R., Prieto, Adriana, Rudas, Agustín, Hoffman, Bruce, Vela, César I. A., Barbosa, Edelcilio Marques, Zent, Egleé L., Gonzales, George Pepe Gallardo, Doza, Hilda Paulette Dávila, de Andrade Miranda, Ires Paula, Guillaumet, Jean-Louis, Pinto, Linder Felipe Mozombite, de Matos Bonates, Luiz Carlos, Silva, Natalino, Gómez, Ricardo Zárate, Zent, Stanford, Gonzales, Therany, Vos, Vincent A., Malhi, Yadvinder, Oliveira, Alexandre A., Cano, Angela, Albuquerque, Bianca Weiss, Vriesendorp, Corine, Correa, Diego Felipe, Torre, Emilio Vilanova, van der Heijden, Geertje, Ramirez-Angulo, Hirma, Ramos, José Ferreira, Young, Kenneth R., Rocha, Maira, Nascimento, Marcelo Trindade, Medina, Maria Natalia Umaña, Tirado, Milton, Wang, Ophelia, Sierra, Rodrigo, Torres-Lezama, Armando, Mendoza, Casimiro, Ferreira, Cid, Baider, Cláudia, Villarroel, Daniel, Balslev, Henrik, Mesones, Italo, Giraldo, Ligia Estela Urrego, Casas, Luisa Fernanda, Reategui, Manuel Augusto Ahuite, Linares-Palomino, Reynaldo, Zagt, Roderick, Cárdenas, Sasha, Farfan-Rios, William, Sampaio, Adeilza Felipe, Pauletto, Daniela, Sandoval, Elvis H. Valderrama, Arevalo, Freddy Ramirez, Huamantupa-Chuquimaco, Isau, Garcia-Cabrera, Karina, Hernandez, Lionel, Gamarra, Luis Valenzuela, Alexiades, Miguel N., Pansini, Susamar, Cuenca, Walter Palacios, Milliken, William, Ricardo, Joana, Lopez-Gonzalez, Gabriela, Pos, Edwin, and ter Steege, Hans
Abstract: Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and MaxEnt predictions relates to a spatial abundance model, based on a large plot dataset for Amazonian tree species, using inverse distance weighting (IDW). We also propose a new pipeline to deal with inconsistencies in NHCs and to limit the area of occupancy of the species. We found a significant but weak positive relationship between the distribution of NHCs and IDW for 66% of the species. The relationship between SDMs and IDW was also significant but weakly positive for 95% of the species, and sensitivity for both analyses was high. Furthermore, the pipeline removed half of the NHCs records. Presence-only SDM applications should consider this limitation, especially for large biodiversity assessments projects, when they are automatically generated without subsequent checking. Our pipeline provides a conservative estimate of a species’ area of occupancy, within an area slightly larger than its extent of occurrence, compatible to e.g. IUCN red list assessments.
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7. Plant trait and vegetation data along a 1314 m elevation gradient with fire history in Puna grasslands, Perú.

Author: Halbritter AH, Vandvik V, Cotner SH, Farfan-Rios W, Maitner BS, Michaletz ST, Oliveras Menor I, Telford RJ, Ccahuana A, Cruz R, Sallo-Bravo J, Santos-Andrade PE, Vilca-Bustamante LL, Castorena M, Chacón-Labella J, Christiansen CT, Duran SM, Egelkraut DD, Gya R, Haugum SV, Seltzer L, Silman MR, Strydom T, Spiegel MP, Barros A, Birkeli K, Boakye M, Chiappero F, Chmurzynski A, Garen JC, Gaudard J, Gauthier TJ, Geange SR, Gonzales FN, Henn JJ, Hošková K, Isaksen A, Jessup LH, Johnson W, Kusch E, Lepley K, Lift M, Martyn TE, Muñoz Mazon M, Middleton SL, Quinteros Casaverde NL, Navarro J, Zepeda V, Ocampo-Zuleta K, Palomino-Cardenas AC, Pastor Ploskonka S, Pierfederici ME, Pinelli V, Rickenback J, Roos RE, Rui HS, Sanchez Diaz E, Sánchez-Tapia A, Smith A, Urquiaga-Flores E, von Oppen J, and Enquist BJ
Subjects: Biodiversity, Peru, Climate, Altitude, Fires, Ecosystem, Grassland, Plants
Abstract: Alpine grassland vegetation supports globally important biodiversity and ecosystems that are increasingly threatened by climate warming and other environmental changes. Trait-based approaches can support understanding of vegetation responses to global change drivers and consequences for ecosystem functioning. In six sites along a 1314 m elevational gradient in Puna grasslands in the Peruvian Andes, we collected datasets on vascular plant composition, plant functional traits, biomass, ecosystem fluxes, and climate data over three years. The data were collected in the wet and dry season and from plots with different fire histories. We selected traits associated with plant resource use, growth, and life history strategies (leaf area, leaf dry/wet mass, leaf thickness, specific leaf area, leaf dry matter content, leaf C, N, P content, C and N isotopes). The trait dataset contains 3,665 plant records from 145 taxa, 54,036 trait measurements (increasing the trait data coverage of the regional flora by 420%) covering 14 traits and 121 plant taxa (ca. 40% of which have no previous publicly available trait data) across 33 families., (© 2024. The Author(s).)
Published: 2024
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8. Consistent patterns of common species across tropical tree communities.

Author: Cooper DLM, Lewis SL, Sullivan MJP, Prado PI, Ter Steege H, Barbier N, Slik F, Sonké B, Ewango CEN, Adu-Bredu S, Affum-Baffoe K, de Aguiar DPP, Ahuite Reategui MA, Aiba SI, Albuquerque BW, de Almeida Matos FD, Alonso A, Amani CA, do Amaral DD, do Amaral IL, Andrade A, de Andrade Miranda IP, Angoboy IB, Araujo-Murakami A, Arboleda NC, Arroyo L, Ashton P, Aymard C GA, Baider C, Baker TR, Balinga MPB, Balslev H, Banin LF, Bánki OS, Baraloto C, Barbosa EM, Barbosa FR, Barlow J, Bastin JF, Beeckman H, Begne S, Bengone NN, Berenguer E, Berry N, Bitariho R, Boeckx P, Bogaert J, Bonyoma B, Boundja P, Bourland N, Boyemba Bosela F, Brambach F, Brienen R, Burslem DFRP, Camargo JL, Campelo W, Cano A, Cárdenas S, Cárdenas López D, de Sá Carpanedo R, Carrero Márquez YA, Carvalho FA, Casas LF, Castellanos H, Castilho CV, Cerón C, Chapman CA, Chave J, Chhang P, Chutipong W, Chuyong GB, Cintra BBL, Clark CJ, Coelho de Souza F, Comiskey JA, Coomes DA, Cornejo Valverde F, Correa DF, Costa FRC, Costa JBP, Couteron P, Culmsee H, Cuni-Sanchez A, Dallmeier F, Damasco G, Dauby G, Dávila N, Dávila Doza HP, De Alban JDT, de Assis RL, De Canniere C, De Haulleville T, de Jesus Veiga Carim M, Demarchi LO, Dexter KG, Di Fiore A, Din HHM, Disney MI, Djiofack BY, Djuikouo MK, Do TV, Doucet JL, Draper FC, Droissart V, Duivenvoorden JF, Engel J, Estienne V, Farfan-Rios W, Fauset S, Feeley KJ, Feitosa YO, Feldpausch TR, Ferreira C, Ferreira J, Ferreira LV, Fletcher CD, Flores BM, Fofanah A, Foli EG, Fonty É, Fredriksson GM, Fuentes A, Galbraith D, Gallardo Gonzales GP, Garcia-Cabrera K, García-Villacorta R, Gomes VHF, Gómez RZ, Gonzales T, Gribel R, Guedes MC, Guevara JE, Hakeem KR, Hall JS, Hamer KC, Hamilton AC, Harris DJ, Harrison RD, Hart TB, Hector A, Henkel TW, Herbohn J, Hockemba MBN, Hoffman B, Holmgren M, Honorio Coronado EN, Huamantupa-Chuquimaco I, Hubau W, Imai N, Irume MV, Jansen PA, Jeffery KJ, Jimenez EM, Jucker T, Junqueira AB, Kalamandeen M, Kamdem NG, Kartawinata K, Kasongo Yakusu E, Katembo JM, Kearsley E, Kenfack D, Kessler M, Khaing TT, Killeen TJ, Kitayama K, Klitgaard B, Labrière N, Laumonier Y, Laurance SGW, Laurance WF, Laurent F, Le TC, Le TT, Leal ME, Leão de Moraes Novo EM, Levesley A, Libalah MB, Licona JC, Lima Filho DA, Lindsell JA, Lopes A, Lopes MA, Lovett JC, Lowe R, Lozada JR, Lu X, Luambua NK, Luize BG, Maas P, Magalhães JLL, Magnusson WE, Mahayani NPD, Makana JR, Malhi Y, Maniguaje Rincón L, Mansor A, Manzatto AG, Marimon BS, Marimon-Junior BH, Marshall AR, Martins MP, Mbayu FM, de Medeiros MB, Mesones I, Metali F, Mihindou V, Millet J, Milliken W, Mogollón HF, Molino JF, Mohd Said MN, Monteagudo Mendoza A, Montero JC, Moore S, Mostacedo B, Mozombite Pinto LF, Mukul SA, Munishi PKT, Nagamasu H, Nascimento HEM, Nascimento MT, Neill D, Nilus R, Noronha JC, Nsenga L, Núñez Vargas P, Ojo L, Oliveira AA, de Oliveira EA, Ondo FE, Palacios Cuenca W, Pansini S, Pansonato MP, Paredes MR, Paudel E, Pauletto D, Pearson RG, Pena JLM, Pennington RT, Peres CA, Permana A, Petronelli P, Peñuela Mora MC, Phillips JF, Phillips OL, Pickavance G, Piedade MTF, Pitman NCA, Ploton P, Popelier A, Poulsen JR, Prieto A, Primack RB, Priyadi H, Qie L, Quaresma AC, de Queiroz HL, Ramirez-Angulo H, Ramos JF, Reis NFC, Reitsma J, Revilla JDC, Riutta T, Rivas-Torres G, Robiansyah I, Rocha M, Rodrigues DJ, Rodriguez-Ronderos ME, Rovero F, Rozak AH, Rudas A, Rutishauser E, Sabatier D, Sagang LB, Sampaio AF, Samsoedin I, Satdichanh M, Schietti J, Schöngart J, Scudeller VV, Seuaturien N, Sheil D, Sierra R, Silman MR, Silva TSF, da Silva Guimarães JR, Simo-Droissart M, Simon MF, Sist P, Sousa TR, de Sousa Farias E, de Souza Coelho L, Spracklen DV, Stas SM, Steinmetz R, Stevenson PR, Stropp J, Sukri RS, Sunderland TCH, Suzuki E, Swaine MD, Tang J, Taplin J, Taylor DM, Tello JS, Terborgh J, Texier N, Theilade I, Thomas DW, Thomas R, Thomas SC, Tirado M, Toirambe B, de Toledo JJ, Tomlinson KW, Torres-Lezama A, Tran HD, Tshibamba Mukendi J, Tumaneng RD, Umaña MN, Umunay PM, Urrego Giraldo LE, Valderrama Sandoval EH, Valenzuela Gamarra L, Van Andel TR, van de Bult M, van de Pol J, van der Heijden G, Vasquez R, Vela CIA, Venticinque EM, Verbeeck H, Veridiano RKA, Vicentini A, Vieira ICG, Vilanova Torre E, Villarroel D, Villa Zegarra BE, Vleminckx J, von Hildebrand P, Vos VA, Vriesendorp C, Webb EL, White LJT, Wich S, Wittmann F, Zagt R, Zang R, Zartman CE, Zemagho L, Zent EL, and Zent S
Subjects: Biodiversity, Africa, Asia, Southeastern, Forests, Trees anatomy & histology, Trees classification, Trees growth & development, Tropical Climate
Abstract: Trees structure the Earth's most biodiverse ecosystem, tropical forests. The vast number of tree species presents a formidable challenge to understanding these forests, including their response to environmental change, as very little is known about most tropical tree species. A focus on the common species may circumvent this challenge. Here we investigate abundance patterns of common tree species using inventory data on 1,003,805 trees with trunk diameters of at least 10 cm across 1,568 locations 1-6 in closed-canopy, structurally intact old-growth tropical forests in Africa, Amazonia and Southeast Asia. We estimate that 2.2%, 2.2% and 2.3% of species comprise 50% of the tropical trees in these regions, respectively. Extrapolating across all closed-canopy tropical forests, we estimate that just 1,053 species comprise half of Earth's 800 billion tropical trees with trunk diameters of at least 10 cm. Despite differing biogeographic, climatic and anthropogenic histories 7 , we find notably consistent patterns of common species and species abundance distributions across the continents. This suggests that fundamental mechanisms of tree community assembly may apply to all tropical forests. Resampling analyses show that the most common species are likely to belong to a manageable list of known species, enabling targeted efforts to understand their ecology. Although they do not detract from the importance of rare species, our results open new opportunities to understand the world's most diverse forests, including modelling their response to environmental change, by focusing on the common species that constitute the majority of their trees., (© 2024. The Author(s).)
Published: 2024
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9. Unraveling Amazon tree community assembly using Maximum Information Entropy: a quantitative analysis of tropical forest ecology.

Author: Pos E, de Souza Coelho L, de Andrade Lima Filho D, Salomão RP, Amaral IL, de Almeida Matos FD, Castilho CV, Phillips OL, Guevara JE, de Jesus Veiga Carim M, López DC, Magnusson WE, Wittmann F, Irume MV, Martins MP, Sabatier D, da Silva Guimarães JR, Molino JF, Bánki OS, Piedade MTF, Pitman NCA, Mendoza AM, Ramos JF, Hawes JE, Almeida EJ, Barbosa LF, Cavalheiro L, Dos Santos MCV, Luize BG, de Leão Novo EMM, Vargas PN, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Coronado ENH, Montero JC, Marimon BS, Marimon-Junior BH, Feldpausch TR, Duque A, Baraloto C, Arboleda NC, Engel J, Petronelli P, Zartman CE, Killeen TJ, Vasquez R, Mostacedo B, Assis RL, Schöngart J, Castellanos H, de Medeiros MB, Simon MF, Andrade A, Camargo JL, Demarchi LO, Laurance WF, Laurance SGW, de Sousa Farias E, Lopes MA, Magalhães JLL, Nascimento HEM, de Queiroz HL, Aymard GAC, Brienen R, Revilla JDC, Costa FRC, Quaresma A, Vieira ICG, Cintra BBL, Stevenson PR, Feitosa YO, Duivenvoorden JF, Mogollón HF, Ferreira LV, Comiskey JA, Draper F, de Toledo JJ, Damasco G, Dávila N, García-Villacorta R, Lopes A, Vicentini A, Noronha JC, Barbosa FR, de Sá Carpanedo R, Emilio T, Levis C, de Jesus Rodrigues D, Schietti J, Souza P, Alonso A, Dallmeier F, Gomes VHF, Lloyd J, Neill D, de Aguiar DPP, Araujo-Murakami A, Arroyo L, Carvalho FA, de Souza FC, do Amaral DD, Feeley KJ, Gribel R, Pansonato MP, Barlow J, Berenguer E, Ferreira J, Fine PVA, Guedes MC, Jimenez EM, Licona JC, Mora MCP, Peres CA, Zegarra BEV, Cerón C, Henkel TW, Maas P, Silveira M, Stropp J, Thomas-Caesar R, Baker TR, Daly D, Dexter KG, Householder JE, Huamantupa-Chuquimaco I, Pennington T, Paredes MR, Fuentes A, Pena JLM, Silman MR, Tello JS, Chave J, Valverde FC, Di Fiore A, Hilário RR, Phillips JF, Rivas-Torres G, van Andel TR, von Hildebrand P, Barbosa EM, de Matos Bonates LC, Doza HPD, Fonty É, Gómez RZ, Gonzales T, Gonzales GPG, Guillaumet JL, Hoffman B, Junqueira AB, Malhi Y, de Andrade Miranda IP, Pinto LFM, Prieto A, Rudas A, Ruschel AR, Silva N, Vela CIA, Vos VA, Zent EL, Zent S, Albuquerque BW, Cano A, Correa DF, Costa JBP, Flores BM, Holmgren M, Nascimento MT, Oliveira AA, Ramirez-Angulo H, Rocha M, Scudeller VV, Sierra R, Tirado M, Umaña MN, van der Heijden G, Torre EV, Vriesendorp C, Wang O, Young KR, Reategui MAA, Baider C, Balslev H, Cárdenas S, Casas LF, Farfan-Rios W, Ferreira C, Linares-Palomino R, Mendoza C, Mesones I, Torres-Lezama A, Giraldo LEU, Villarroel D, Zagt R, Alexiades MN, Garcia-Cabrera K, Hernandez L, Milliken W, Cuenca WP, Pansini S, Pauletto D, Arevalo FR, Sampaio AF, Sandoval EHV, Gamarra LV, Boenisch G, Kattge J, Kraft N, Levesley A, Melgaço K, Pickavance G, Poorter L, and Ter Steege H
Subjects: Entropy, Forests, Plants, Ecology, Tropical Climate, Ecosystem, Biodiversity
Abstract: In a time of rapid global change, the question of what determines patterns in species abundance distribution remains a priority for understanding the complex dynamics of ecosystems. The constrained maximization of information entropy provides a framework for the understanding of such complex systems dynamics by a quantitative analysis of important constraints via predictions using least biased probability distributions. We apply it to over two thousand hectares of Amazonian tree inventories across seven forest types and thirteen functional traits, representing major global axes of plant strategies. Results show that constraints formed by regional relative abundances of genera explain eight times more of local relative abundances than constraints based on directional selection for specific functional traits, although the latter does show clear signals of environmental dependency. These results provide a quantitative insight by inference from large-scale data using cross-disciplinary methods, furthering our understanding of ecological dynamics., (© 2023. The Author(s).)
Published: 2023
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10. Assessing the carbon capture potential of a reforestation project.

Author: Lefebvre D, Williams AG, Kirk GJD, Paul, Burgess J, Meersmans J, Silman MR, Román-Dañobeytia F, Farfan J, and Smith P
Subjects: Biomass, Brazil, Databases, Factual, Ecosystem, Models, Theoretical, Peru, Software, Soil chemistry, Trees, Carbon chemistry, Carbon Cycle, Conservation of Natural Resources, Forests
Abstract: The number of reforestation projects worldwide is increasing. In many cases funding is obtained through the claimed carbon capture of the trees, presented as immediate and durable, whereas reforested plots need time and maintenance to realise their carbon capture potential. Further, claims usually overlook the environmental costs of natural or anthropogenic disturbances during the forest's lifetime, and greenhouse gas (GHG) emissions associated with the reforestation are not allowed for. This study uses life cycle assessment to quantify the carbon footprint of setting up a reforestation plot in the Peruvian Amazon. In parallel, we combine a soil carbon model with an above- and below-ground plant carbon model to predict the increase in carbon stocks after planting. We compare our results with the carbon capture claims made by a reforestation platform. Our results show major errors in carbon accounting in reforestation projects if they (1) ignore the time needed for trees to reach their carbon capture potential; (2) ignore the GHG emissions involved in setting up a plot; (3) report the carbon capture potential per tree planted, thereby ignoring limitations at the forest ecosystem level; or (4) under-estimate tree losses due to inevitable human and climatic disturbances. Further, we show that applications of biochar during reforestation can partially compensate for project emissions., (© 2021. The Author(s).)
Published: 2021
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11. Biased-corrected richness estimates for the Amazonian tree flora.

Author: Ter Steege H, Prado PI, Lima RAF, Pos E, de Souza Coelho L, de Andrade Lima Filho D, Salomão RP, Amaral IL, de Almeida Matos FD, Castilho CV, Phillips OL, Guevara JE, de Jesus Veiga Carim M, Cárdenas López D, Magnusson WE, Wittmann F, Martins MP, Sabatier D, Irume MV, da Silva Guimarães JR, Molino JF, Bánki OS, Piedade MTF, Pitman NCA, Ramos JF, Monteagudo Mendoza A, Venticinque EM, Luize BG, Núñez Vargas P, Silva TSF, de Leão Novo EMM, Reis NFC, Terborgh J, Manzatto AG, Casula KR, Honorio Coronado EN, Montero JC, Duque A, Costa FRC, Castaño Arboleda N, Schöngart J, Zartman CE, Killeen TJ, Marimon BS, Marimon-Junior BH, Vasquez R, Mostacedo B, Demarchi LO, Feldpausch TR, Engel J, Petronelli P, Baraloto C, Assis RL, Castellanos H, Simon MF, de Medeiros MB, Quaresma A, Laurance SGW, Rincón LM, Andrade A, Sousa TR, Camargo JL, Schietti J, Laurance WF, de Queiroz HL, Nascimento HEM, Lopes MA, de Sousa Farias E, Magalhães JLL, Brienen R, Aymard C GA, Revilla JDC, Vieira ICG, Cintra BBL, Stevenson PR, Feitosa YO, Duivenvoorden JF, Mogollón HF, Araujo-Murakami A, Ferreira LV, Lozada JR, Comiskey JA, de Toledo JJ, Damasco G, Dávila N, Lopes A, García-Villacorta R, Draper F, Vicentini A, Cornejo Valverde F, Lloyd J, Gomes VHF, Neill D, Alonso A, Dallmeier F, de Souza FC, Gribel R, Arroyo L, Carvalho FA, de Aguiar DPP, do Amaral DD, Pansonato MP, Feeley KJ, Berenguer E, Fine PVA, Guedes MC, Barlow J, Ferreira J, Villa B, Peñuela Mora MC, Jimenez EM, Licona JC, Cerón C, Thomas R, Maas P, Silveira M, Henkel TW, Stropp J, Paredes MR, Dexter KG, Daly D, Baker TR, Huamantupa-Chuquimaco I, Milliken W, Pennington T, Tello JS, Pena JLM, Peres CA, Klitgaard B, Fuentes A, Silman MR, Di Fiore A, von Hildebrand P, Chave J, van Andel TR, Hilário RR, Phillips JF, Rivas-Torres G, Noronha JC, Prieto A, Gonzales T, de Sá Carpanedo R, Gonzales GPG, Gómez RZ, de Jesus Rodrigues D, Zent EL, Ruschel AR, Vos VA, Fonty É, Junqueira AB, Doza HPD, Hoffman B, Zent S, Barbosa EM, Malhi Y, de Matos Bonates LC, de Andrade Miranda IP, Silva N, Barbosa FR, Vela CIA, Pinto LFM, Rudas A, Albuquerque BW, Umaña MN, Carrero Márquez YA, van der Heijden G, Young KR, Tirado M, Correa DF, Sierra R, Costa JBP, Rocha M, Vilanova Torre E, Wang O, Oliveira AA, Kalamandeen M, Vriesendorp C, Ramirez-Angulo H, Holmgren M, Nascimento MT, Galbraith D, Flores BM, Scudeller VV, Cano A, Ahuite Reategui MA, Mesones I, Baider C, Mendoza C, Zagt R, Urrego Giraldo LE, Ferreira C, Villarroel D, Linares-Palomino R, Farfan-Rios W, Farfan-Rios W, Casas LF, Cárdenas S, Balslev H, Torres-Lezama A, Alexiades MN, Garcia-Cabrera K, Valenzuela Gamarra L, Valderrama Sandoval EH, Ramirez Arevalo F, Hernandez L, Sampaio AF, Pansini S, Palacios Cuenca W, de Oliveira EA, Pauletto D, Levesley A, Melgaço K, and Pickavance G
Subjects: Brazil, Biodiversity, Classification methods, Forests, Rivers, Trees classification
Abstract: Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia is best approximated by a logseries with aggregated individuals, where aggregation increases with rarity. By averaging several methods to estimate total richness, we confirm that over 15,000 tree species are expected to occur in Amazonia. We also show that using ten times the number of plots would result in an increase to just ~50% of those 15,000 estimated species. To get a more complete sample of all tree species, rigorous field campaigns may be needed but the number of trees in Amazonia will remain an estimate for years to come.
Published: 2020
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12. Rarity of monodominance in hyperdiverse Amazonian forests.

Author: Ter Steege H, Henkel TW, Helal N, Marimon BS, Marimon-Junior BH, Huth A, Groeneveld J, Sabatier D, Coelho LS, Filho DAL, Salomão RP, Amaral IL, Matos FDA, Castilho CV, Phillips OL, Guevara JE, Carim MJV, Cárdenas López D, Magnusson WE, Wittmann F, Irume MV, Martins MP, Guimarães JRDS, Molino JF, Bánki OS, Piedade MTF, Pitman NCA, Mendoza AM, Ramos JF, Luize BG, Moraes de Leão Novo EM, Núñez Vargas P, Silva TSF, Venticinque EM, Manzatto AG, Reis NFC, Terborgh J, Casula KR, Honorio Coronado EN, Montero JC, Feldpausch TR, Duque A, Costa FRC, Arboleda NC, Schöngart J, Killeen TJ, Vasquez R, Mostacedo B, Demarchi LO, Assis RL, Baraloto C, Engel J, Petronelli P, Castellanos H, de Medeiros MB, Quaresma A, Simon MF, Andrade A, Camargo JL, Laurance SGW, Laurance WF, Rincón LM, Schietti J, Sousa TR, de Sousa Farias E, Lopes MA, Magalhães JLL, Mendonça Nascimento HE, Lima de Queiroz H, Aymard C GA, Brienen R, Revilla JDC, Vieira ICG, Cintra BBL, Stevenson PR, Feitosa YO, Duivenvoorden JF, Mogollón HF, Araujo-Murakami A, Ferreira LV, Lozada JR, Comiskey JA, de Toledo JJ, Damasco G, Dávila N, Draper F, García-Villacorta R, Lopes A, Vicentini A, Alonso A, Dallmeier F, Gomes VHF, Lloyd J, Neill D, de Aguiar DPP, Arroyo L, Carvalho FA, de Souza FC, do Amaral DD, Feeley KJ, Gribel R, Pansonato MP, Barlow J, Berenguer E, Ferreira J, Fine PVA, Guedes MC, Jimenez EM, Licona JC, Peñuela Mora MC, Villa B, Cerón C, Maas P, Silveira M, Stropp J, Thomas R, Baker TR, Daly D, Dexter KG, Huamantupa-Chuquimaco I, Milliken W, Pennington T, Ríos Paredes M, Fuentes A, Klitgaard B, Pena JLM, Peres CA, Silman MR, Tello JS, Chave J, Cornejo Valverde F, Di Fiore A, Hilário RR, Phillips JF, Rivas-Torres G, van Andel TR, von Hildebrand P, Noronha JC, Barbosa EM, Barbosa FR, de Matos Bonates LC, Carpanedo RS, Dávila Doza HP, Fonty É, GómeZárate Z R, Gonzales T, Gallardo Gonzales GP, Hoffman B, Junqueira AB, Malhi Y, Miranda IPA, Pinto LFM, Prieto A, Rodrigues DJ, Rudas A, Ruschel AR, Silva N, Vela CIA, Vos VA, Zent EL, Zent S, Weiss Albuquerque B, Cano A, Carrero Márquez YA, Correa DF, Costa JBP, Flores BM, Galbraith D, Holmgren M, Kalamandeen M, Nascimento MT, Oliveira AA, Ramirez-Angulo H, Rocha M, Scudeller VV, Sierra R, Tirado M, Umaña Medina MN, van der Heijden G, Vilanova Torre E, Vriesendorp C, Wang O, Young KR, Ahuite Reategui MA, Baider C, Balslev H, Cárdenas S, Casas LF, Farfan-Rios W, Ferreira C, Linares-Palomino R, Mendoza C, Mesones I, Torres-Lezama A, Giraldo LEU, Villarroel D, Zagt R, Alexiades MN, de Oliveira EA, Garcia-Cabrera K, Hernandez L, Palacios Cuenca W, Pansini S, Pauletto D, Ramirez Arevalo F, Sampaio AF, Sandoval EHV, Valenzuela Gamarra L, Levesley A, Pickavance G, and Melgaço K
Abstract: Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such "monodominant" forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tree Diversity Network (ATDN). Utilizing a simple defining metric of at least half of the trees ≥ 10 cm diameter belonging to one species, we found only a few occurrences of monodominance in Amazonia, and the phenomenon was not significantly linked to previously hypothesized life history traits such wood density, seed mass, ectomycorrhizal associations, or Rhizobium nodulation. In our analysis, coppicing (the formation of sprouts at the base of the tree or on roots) was the only trait significantly linked to monodominance. While at specific locales coppicing or ectomycorrhizal associations may confer a considerable advantage to a tree species and lead to its monodominance, very few species have these traits. Mining of the ATDN dataset suggests that monodominance is quite rare in Amazonia, and may be linked primarily to edaphic factors.
Published: 2019
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13. Species Distribution Modelling: Contrasting presence-only models with plot abundance data.

Author: Gomes VHF, IJff SD, Raes N, Amaral IL, Salomão RP, de Souza Coelho L, de Almeida Matos FD, Castilho CV, de Andrade Lima Filho D, López DC, Guevara JE, Magnusson WE, Phillips OL, Wittmann F, de Jesus Veiga Carim M, Martins MP, Irume MV, Sabatier D, Molino JF, Bánki OS, da Silva Guimarães JR, Pitman NCA, Piedade MTF, Mendoza AM, Luize BG, Venticinque EM, de Leão Novo EMM, Vargas PN, Silva TSF, Manzatto AG, Terborgh J, Reis NFC, Montero JC, Casula KR, Marimon BS, Marimon BH, Coronado ENH, Feldpausch TR, Duque A, Zartman CE, Arboleda NC, Killeen TJ, Mostacedo B, Vasquez R, Schöngart J, Assis RL, Medeiros MB, Simon MF, Andrade A, Laurance WF, Camargo JL, Demarchi LO, Laurance SGW, de Sousa Farias E, Nascimento HEM, Revilla JDC, Quaresma A, Costa FRC, Vieira ICG, Cintra BBL, Castellanos H, Brienen R, Stevenson PR, Feitosa Y, Duivenvoorden JF, Aymard C GA, Mogollón HF, Targhetta N, Comiskey JA, Vicentini A, Lopes A, Damasco G, Dávila N, García-Villacorta R, Levis C, Schietti J, Souza P, Emilio T, Alonso A, Neill D, Dallmeier F, Ferreira LV, Araujo-Murakami A, Praia D, do Amaral DD, Carvalho FA, de Souza FC, Feeley K, Arroyo L, Pansonato MP, Gribel R, Villa B, Licona JC, Fine PVA, Cerón C, Baraloto C, Jimenez EM, Stropp J, Engel J, Silveira M, Mora MCP, Petronelli P, Maas P, Thomas-Caesar R, Henkel TW, Daly D, Paredes MR, Baker TR, Fuentes A, Peres CA, Chave J, Pena JLM, Dexter KG, Silman MR, Jørgensen PM, Pennington T, Di Fiore A, Valverde FC, Phillips JF, Rivas-Torres G, von Hildebrand P, van Andel TR, Ruschel AR, Prieto A, Rudas A, Hoffman B, Vela CIA, Barbosa EM, Zent EL, Gonzales GPG, Doza HPD, de Andrade Miranda IP, Guillaumet JL, Pinto LFM, de Matos Bonates LC, Silva N, Gómez RZ, Zent S, Gonzales T, Vos VA, Malhi Y, Oliveira AA, Cano A, Albuquerque BW, Vriesendorp C, Correa DF, Torre EV, van der Heijden G, Ramirez-Angulo H, Ramos JF, Young KR, Rocha M, Nascimento MT, Medina MNU, Tirado M, Wang O, Sierra R, Torres-Lezama A, Mendoza C, Ferreira C, Baider C, Villarroel D, Balslev H, Mesones I, Giraldo LEU, Casas LF, Reategui MAA, Linares-Palomino R, Zagt R, Cárdenas S, Farfan-Rios W, Sampaio AF, Pauletto D, Sandoval EHV, Arevalo FR, Huamantupa-Chuquimaco I, Garcia-Cabrera K, Hernandez L, Gamarra LV, Alexiades MN, Pansini S, Cuenca WP, Milliken W, Ricardo J, Lopez-Gonzalez G, Pos E, and Ter Steege H
Subjects: Brazil, Chrysobalanaceae physiology, Fabaceae physiology, Humans, Polygonaceae physiology, Conservation of Natural Resources statistics & numerical data, Models, Statistical, Plant Dispersal physiology, Trees physiology
Abstract: Species distribution models (SDMs) are widely used in ecology and conservation. Presence-only SDMs such as MaxEnt frequently use natural history collections (NHCs) as occurrence data, given their huge numbers and accessibility. NHCs are often spatially biased which may generate inaccuracies in SDMs. Here, we test how the distribution of NHCs and MaxEnt predictions relates to a spatial abundance model, based on a large plot dataset for Amazonian tree species, using inverse distance weighting (IDW). We also propose a new pipeline to deal with inconsistencies in NHCs and to limit the area of occupancy of the species. We found a significant but weak positive relationship between the distribution of NHCs and IDW for 66% of the species. The relationship between SDMs and IDW was also significant but weakly positive for 95% of the species, and sensitivity for both analyses was high. Furthermore, the pipeline removed half of the NHCs records. Presence-only SDM applications should consider this limitation, especially for large biodiversity assessments projects, when they are automatically generated without subsequent checking. Our pipeline provides a conservative estimate of a species' area of occupancy, within an area slightly larger than its extent of occurrence, compatible to e.g. IUCN red list assessments.
Published: 2018
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14. Averting biodiversity collapse in tropical forest protected areas.

Author: Laurance WF, Useche DC, Rendeiro J, Kalka M, Bradshaw CJ, Sloan SP, Laurance SG, Campbell M, Abernethy K, Alvarez P, Arroyo-Rodriguez V, Ashton P, Benítez-Malvido J, Blom A, Bobo KS, Cannon CH, Cao M, Carroll R, Chapman C, Coates R, Cords M, Danielsen F, De Dijn B, Dinerstein E, Donnelly MA, Edwards D, Edwards F, Farwig N, Fashing P, Forget PM, Foster M, Gale G, Harris D, Harrison R, Hart J, Karpanty S, Kress WJ, Krishnaswamy J, Logsdon W, Lovett J, Magnusson W, Maisels F, Marshall AR, McClearn D, Mudappa D, Nielsen MR, Pearson R, Pitman N, van der Ploeg J, Plumptre A, Poulsen J, Quesada M, Rainey H, Robinson D, Roetgers C, Rovero F, Scatena F, Schulze C, Sheil D, Struhsaker T, Terborgh J, Thomas D, Timm R, Urbina-Cardona JN, Vasudevan K, Wright SJ, Arias-G JC, Arroyo L, Ashton M, Auzel P, Babaasa D, Babweteera F, Baker P, Banki O, Bass M, Bila-Isia I, Blake S, Brockelman W, Brokaw N, Brühl CA, Bunyavejchewin S, Chao JT, Chave J, Chellam R, Clark CJ, Clavijo J, Congdon R, Corlett R, Dattaraja HS, Dave C, Davies G, Beisiegel Bde M, da Silva Rde N, Di Fiore A, Diesmos A, Dirzo R, Doran-Sheehy D, Eaton M, Emmons L, Estrada A, Ewango C, Fedigan L, Feer F, Fruth B, Willis JG, Goodale U, Goodman S, Guix JC, Guthiga P, Haber W, Hamer K, Herbinger I, Hill J, Huang Z, Sun IF, Ickes K, Itoh A, Ivanauskas N, Jackes B, Janovec J, Janzen D, Jiangming M, Jin C, Jones T, Justiniano H, Kalko E, Kasangaki A, Killeen T, King HB, Klop E, Knott C, Koné I, Kudavidanage E, Ribeiro JL, Lattke J, Laval R, Lawton R, Leal M, Leighton M, Lentino M, Leonel C, Lindsell J, Ling-Ling L, Linsenmair KE, Losos E, Lugo A, Lwanga J, Mack AL, Martins M, McGraw WS, McNab R, Montag L, Thompson JM, Nabe-Nielsen J, Nakagawa M, Nepal S, Norconk M, Novotny V, O'Donnell S, Opiang M, Ouboter P, Parker K, Parthasarathy N, Pisciotta K, Prawiradilaga D, Pringle C, Rajathurai S, Reichard U, Reinartz G, Renton K, Reynolds G, Reynolds V, Riley E, Rödel MO, Rothman J, Round P, Sakai S, Sanaiotti T, Savini T, Schaab G, Seidensticker J, Siaka A, Silman MR, Smith TB, de Almeida SS, Sodhi N, Stanford C, Stewart K, Stokes E, Stoner KE, Sukumar R, Surbeck M, Tobler M, Tscharntke T, Turkalo A, Umapathy G, van Weerd M, Rivera JV, Venkataraman M, Venn L, Verea C, de Castilho CV, Waltert M, Wang B, Watts D, Weber W, West P, Whitacre D, Whitney K, Wilkie D, Williams S, Wright DD, Wright P, Xiankai L, Yonzon P, and Zamzani F
Subjects: Agriculture statistics & numerical data, Animals, Data Collection, Ecology statistics & numerical data, Environmental Pollution adverse effects, Environmental Pollution statistics & numerical data, Fires statistics & numerical data, Forestry statistics & numerical data, Interviews as Topic, Mining statistics & numerical data, Population Growth, Rain, Reproducibility of Results, Research Personnel, Surveys and Questionnaires, Temperature, Biodiversity, Conservation of Natural Resources statistics & numerical data, Endangered Species statistics & numerical data, Trees physiology, Tropical Climate
Abstract: The rapid disruption of tropical forests probably imperils global biodiversity more than any other contemporary phenomenon. With deforestation advancing quickly, protected areas are increasingly becoming final refuges for threatened species and natural ecosystem processes. However, many protected areas in the tropics are themselves vulnerable to human encroachment and other environmental stresses. As pressures mount, it is vital to know whether existing reserves can sustain their biodiversity. A critical constraint in addressing this question has been that data describing a broad array of biodiversity groups have been unavailable for a sufficiently large and representative sample of reserves. Here we present a uniquely comprehensive data set on changes over the past 20 to 30 years in 31 functional groups of species and 21 potential drivers of environmental change, for 60 protected areas stratified across the world’s major tropical regions. Our analysis reveals great variation in reserve ‘health’: about half of all reserves have been effective or performed passably, but the rest are experiencing an erosion of biodiversity that is often alarmingly widespread taxonomically and functionally. Habitat disruption, hunting and forest-product exploitation were the strongest predictors of declining reserve health. Crucially, environmental changes immediately outside reserves seemed nearly as important as those inside in determining their ecological fate, with changes inside reserves strongly mirroring those occurring around them. These findings suggest that tropical protected areas are often intimately linked ecologically to their surrounding habitats, and that a failure to stem broad-scale loss and degradation of such habitats could sharply increase the likelihood of serious biodiversity declines.
Published: 2012
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14 results on '"SILMAN, MILES R."'

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14. Averting biodiversity collapse in tropical forest protected areas.

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