25 results on '"L Maier"'
Search Results
2. Spectral characterization of intraoperative renal perfusion using hyperspectral imaging and artificial intelligence.
- Author
-
Studier-Fischer A, Bressan M, Qasim AB, Özdemir B, Sellner J, Seidlitz S, Haney CM, Egen L, Michel M, Dietrich M, Salg GA, Billmann F, Nienhüser H, Hackert T, Müller BP, Maier-Hein L, Nickel F, and Kowalewski KF
- Subjects
- Animals, Swine, Humans, Artificial Intelligence, Nephrectomy methods, Perfusion methods, Kidney blood supply, Kidney diagnostic imaging, Kidney surgery, Hyperspectral Imaging methods
- Abstract
Accurate intraoperative assessment of organ perfusion is a pivotal determinant in preserving organ function e.g. during kidney surgery including partial nephrectomy or kidney transplantation. Hyperspectral imaging (HSI) has great potential to objectively describe and quantify this perfusion as opposed to conventional surrogate techniques such as ultrasound flowmeter, indocyanine green or the subjective eye of the surgeon. An established live porcine model under general anesthesia received median laparotomy and renal mobilization. Different scenarios that were measured using HSI were (1) complete, (2) gradual and (3) partial malperfusion. The differences in spectral reflectance as well as HSI oxygenation (StO
2 ) between different perfusion states were compelling and as high as 56.9% with 70.3% (± 11.0%) for "physiological" vs. 13.4% (± 3.1%) for "venous congestion". A machine learning (ML) algorithm was able to distinguish between these perfusion states with a balanced prediction accuracy of 97.8%. Data from this porcine study including 1300 recordings across 57 individuals was compared to a human dataset of 104 recordings across 17 individuals suggesting clinical transferability. Therefore, HSI is a highly promising tool for intraoperative microvascular evaluation of perfusion states with great advantages over existing surrogate techniques. Clinical trials are required to prove patient benefit., (© 2024. The Author(s).)- Published
- 2024
- Full Text
- View/download PDF
3. Miniaturized electromagnetic tracking enables efficient ultrasound-navigated needle insertions.
- Author
-
Seitel A, Groener D, Eisenmann M, Aguilera Saiz L, Pekdemir B, Sridharan P, Nguyen CT, Häfele S, Feldmann C, Everitt B, Happel C, Herrmann E, Sabet A, Grünwald F, Franz AM, and Maier-Hein L
- Subjects
- Humans, Ultrasonography, Interventional methods, Ultrasonography, Interventional instrumentation, Miniaturization, Equipment Design, Phantoms, Imaging, Electromagnetic Phenomena, Needles
- Abstract
Ultrasound (US) has gained popularity as a guidance modality for percutaneous needle insertions because it is widely available and non-ionizing. However, coordinating scanning and needle insertion still requires significant experience. Current assistance solutions utilize optical or electromagnetic tracking (EMT) technology directly integrated into the US device or probe. This results in specialized devices or introduces additional hardware, limiting the ergonomics of both the scanning and insertion process. We developed the first ultrasound (US) navigation solution designed to be used as a non-permanent accessory for existing US devices while maintaining the ergonomics during the scanning process. A miniaturized EMT source is reversibly attached to the US probe, temporarily creating a combined modality that provides real-time anatomical imaging and instrument tracking at the same time. Studies performed with 11 clinical operators show that the proposed navigation solution can guide needle insertions with a targeting accuracy of about 5 mm, which is comparable to existing approaches and unaffected by repeated attachment and detachment of the miniaturized tracking solution. The assistance proved particularly helpful for non-expert users and needle insertions performed outside of the US plane. The small size and reversible attachability of the proposed navigation solution promises streamlined integration into the clinical workflow and widespread access to US navigated punctures., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
4. The SPECTRAL Perfusion Arm Clamping dAtaset (SPECTRALPACA) for video-rate functional imaging of the skin.
- Author
-
Ayala L, Mindroc-Filimon D, Rees M, Hübner M, Sellner J, Seidlitz S, Tizabi M, Wirkert S, Seitel A, and Maier-Hein L
- Subjects
- Humans, Video Recording, Hand blood supply, Arm blood supply, Arm diagnostic imaging, Skin blood supply, Skin diagnostic imaging
- Abstract
Spectral imaging has the potential to become a key technique in interventional medicine as it unveils much richer optical information compared to conventional RBG (red, green, and blue)-based imaging. Thus allowing for high-resolution functional tissue analysis in real time. Its higher information density particularly shows promise for the development of powerful perfusion monitoring methods for clinical use. However, even though in vivo validation of such methods is crucial for their clinical translation, the biomedical field suffers from a lack of publicly available datasets for this purpose. Closing this gap, we generated the SPECTRAL Perfusion Arm Clamping dAtaset (SPECTRALPACA). It comprises ten spectral videos (∼20 Hz, approx. 20,000 frames each) systematically recorded of the hands of ten healthy human participants in different functional states. We paired each spectral video with concisely tracked regions of interest, and corresponding diffuse reflectance measurements recorded with a spectrometer. Providing the first openly accessible in human spectral video dataset for perfusion monitoring, our work facilitates the development and validation of new functional imaging methods., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
5. HeiPorSPECTRAL - the Heidelberg Porcine HyperSPECTRAL Imaging Dataset of 20 Physiological Organs.
- Author
-
Studier-Fischer A, Seidlitz S, Sellner J, Bressan M, Özdemir B, Ayala L, Odenthal J, Knoedler S, Kowalewski KF, Haney CM, Salg G, Dietrich M, Kenngott H, Gockel I, Hackert T, Müller-Stich BP, Maier-Hein L, and Nickel F
- Subjects
- Animals, Hyperspectral Imaging, Swine anatomy & histology
- Abstract
Hyperspectral Imaging (HSI) is a relatively new medical imaging modality that exploits an area of diagnostic potential formerly untouched. Although exploratory translational and clinical studies exist, no surgical HSI datasets are openly accessible to the general scientific community. To address this bottleneck, this publication releases HeiPorSPECTRAL ( https://www.heiporspectral.org ; https://doi.org/10.5281/zenodo.7737674 ), the first annotated high-quality standardized surgical HSI dataset. It comprises 5,758 spectral images acquired with the TIVITA
® Tissue and annotated with 20 physiological porcine organs from 8 pigs per organ distributed over a total number of 11 pigs. Each HSI image features a resolution of 480 × 640 pixels acquired over the 500-1000 nm wavelength range. The acquisition protocol has been designed such that the variability of organ spectra as a function of several parameters including the camera angle and the individual can be assessed. A comprehensive technical validation confirmed both the quality of the raw data and the annotations. We envision potential reuse within this dataset, but also its reuse as baseline data for future research questions outside this dataset. Measurement(s) Spectral Reflectance Technology Type(s) Hyperspectral Imaging Sample Characteristic - Organism Sus scrofa., (© 2023. The Author(s).)- Published
- 2023
- Full Text
- View/download PDF
6. Prevalence and predictors of difficult vascular anatomy in forearm artery access for coronary angiography and PCI.
- Author
-
Roeschl T, Jano AM, Fochler F, Grewe MM, Wacker M, Meier K, Schmidt C, Maier L, and Grewe PH
- Subjects
- Cardiac Catheterization, Coronary Angiography, Forearm, Humans, Prevalence, Radial Artery, Retrospective Studies, Percutaneous Coronary Intervention
- Abstract
Transradial access has established as preferred access for cardiac catheterization. Difficult vascular anatomy (DVA) is a noticeable threat to procedural success. We retrospectively analyzed 1397 consecutive cardiac catheterizations to estimate prevalence and identify predictors of DVA. In the subclavian-innominate-aortic-region (SIAR), DVA was causing failure in 2.4% during right-sided vs. 0.7% in left-sided forearm-artery-access (FAA) attempts (χ
2 = 5.1, p = 0.023). Independent predictors were advanced age [odds ratio (OR) 1.44 per 10-year increase, 95% confidence interval (CI) 1.15 to 1.80, p = 0.001] and right FAA (OR 2.52, 95% CI 1.72 to 3.69, p < 0.001). In the radial-ulnar-brachial region (RUBR), DVA was causing failure in 2.5% during right-sided vs. 1.7% in left-sided FAA (χ2 = 0.77, p = 0.38). Independent predictors were age (OR 1.28 per 10-year increase, 95% CI 1.01 to 1.61, p = 0.04), lower height (OR 1.56 per 10-cm decrease, 95% CI 1.13 to 2.15, p = 0.008) and left FAA (OR 2.15, 95% CI 1.45 to 3.18, p < 0.001). Bilateral DVA was causing procedural failure in 0.9% of patients. The prevalence of bilateral DVA was rare. Predictors in SIAR were right FAA and advanced age and in RUBR, left FAA, advanced age and lower height. Gender, arterial hypertension, body mass, STEMI and smoking were not associated with DVA., (© 2022. The Author(s).)- Published
- 2022
- Full Text
- View/download PDF
7. A Delphi consensus statement for digital surgery.
- Author
-
Lam K, Abràmoff MD, Balibrea JM, Bishop SM, Brady RR, Callcut RA, Chand M, Collins JW, Diener MK, Eisenmann M, Fermont K, Neto MG, Hager GD, Hinchliffe RJ, Horgan A, Jannin P, Langerman A, Logishetty K, Mahadik A, Maier-Hein L, Antona EM, Mascagni P, Mathew RK, Müller-Stich BP, Neumuth T, Nickel F, Park A, Pellino G, Rudzicz F, Shah S, Slack M, Smith MJ, Soomro N, Speidel S, Stoyanov D, Tilney HS, Wagner M, Darzi A, Kinross JM, and Purkayastha S
- Abstract
The use of digital technology is increasing rapidly across surgical specialities, yet there is no consensus for the term 'digital surgery'. This is critical as digital health technologies present technical, governance, and legal challenges which are unique to the surgeon and surgical patient. We aim to define the term digital surgery and the ethical issues surrounding its clinical application, and to identify barriers and research goals for future practice. 38 international experts, across the fields of surgery, AI, industry, law, ethics and policy, participated in a four-round Delphi exercise. Issues were generated by an expert panel and public panel through a scoping questionnaire around key themes identified from the literature and voted upon in two subsequent questionnaire rounds. Consensus was defined if >70% of the panel deemed the statement important and <30% unimportant. A final online meeting was held to discuss consensus statements. The definition of digital surgery as the use of technology for the enhancement of preoperative planning, surgical performance, therapeutic support, or training, to improve outcomes and reduce harm achieved 100% consensus agreement. We highlight key ethical issues concerning data, privacy, confidentiality and public trust, consent, law, litigation and liability, and commercial partnerships within digital surgery and identify barriers and research goals for future practice. Developers and users of digital surgery must not only have an awareness of the ethical issues surrounding digital applications in healthcare, but also the ethical considerations unique to digital surgery. Future research into these issues must involve all digital surgery stakeholders including patients., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
8. Spectral organ fingerprints for machine learning-based intraoperative tissue classification with hyperspectral imaging in a porcine model.
- Author
-
Studier-Fischer A, Seidlitz S, Sellner J, Özdemir B, Wiesenfarth M, Ayala L, Odenthal J, Knödler S, Kowalewski KF, Haney CM, Camplisson I, Dietrich M, Schmidt K, Salg GA, Kenngott HG, Adler TJ, Schreck N, Kopp-Schneider A, Maier-Hein K, Maier-Hein L, Müller-Stich BP, and Nickel F
- Subjects
- Animals, Neural Networks, Computer, Swine, Hyperspectral Imaging, Machine Learning
- Abstract
Visual discrimination of tissue during surgery can be challenging since different tissues appear similar to the human eye. Hyperspectral imaging (HSI) removes this limitation by associating each pixel with high-dimensional spectral information. While previous work has shown its general potential to discriminate tissue, clinical translation has been limited due to the method's current lack of robustness and generalizability. Specifically, the scientific community is lacking a comprehensive spectral tissue atlas, and it is unknown whether variability in spectral reflectance is primarily explained by tissue type rather than the recorded individual or specific acquisition conditions. The contribution of this work is threefold: (1) Based on an annotated medical HSI data set (9059 images from 46 pigs), we present a tissue atlas featuring spectral fingerprints of 20 different porcine organs and tissue types. (2) Using the principle of mixed model analysis, we show that the greatest source of variability related to HSI images is the organ under observation. (3) We show that HSI-based fully-automatic tissue differentiation of 20 organ classes with deep neural networks is possible with high accuracy (> 95%). We conclude from our study that automatic tissue discrimination based on HSI data is feasible and could thus aid in intraoperative decisionmaking and pave the way for context-aware computer-assisted surgery systems and autonomous robotics., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
9. Unravelling the collateral damage of antibiotics on gut bacteria.
- Author
-
Maier L, Goemans CV, Wirbel J, Kuhn M, Eberl C, Pruteanu M, Müller P, Garcia-Santamarina S, Cacace E, Zhang B, Gekeler C, Banerjee T, Anderson EE, Milanese A, Löber U, Forslund SK, Patil KR, Zimmermann M, Stecher B, Zeller G, Bork P, and Typas A
- Subjects
- Animals, Anti-Bacterial Agents classification, Bacteria classification, Bacteria, Anaerobic drug effects, Bacteroides drug effects, Clostridioides difficile drug effects, Dicumarol pharmacology, Erythromycin pharmacology, Feces microbiology, Female, Germ-Free Life, Humans, Macrolides pharmacology, Male, Mice, Microbiota drug effects, Symbiosis drug effects, Tetracyclines pharmacology, Anti-Bacterial Agents adverse effects, Anti-Bacterial Agents pharmacology, Bacteria drug effects, Gastrointestinal Microbiome drug effects
- Abstract
Antibiotics are used to fight pathogens but also target commensal bacteria, disturbing the composition of gut microbiota and causing dysbiosis and disease
1 . Despite this well-known collateral damage, the activity spectrum of different antibiotic classes on gut bacteria remains poorly characterized. Here we characterize further 144 antibiotics from a previous screen of more than 1,000 drugs on 38 representative human gut microbiome species2 . Antibiotic classes exhibited distinct inhibition spectra, including generation dependence for quinolones and phylogeny independence for β-lactams. Macrolides and tetracyclines, both prototypic bacteriostatic protein synthesis inhibitors, inhibited nearly all commensals tested but also killed several species. Killed bacteria were more readily eliminated from in vitro communities than those inhibited. This species-specific killing activity challenges the long-standing distinction between bactericidal and bacteriostatic antibiotic classes and provides a possible explanation for the strong effect of macrolides on animal3-5 and human6,7 gut microbiomes. To mitigate this collateral damage of macrolides and tetracyclines, we screened for drugs that specifically antagonized the antibiotic activity against abundant Bacteroides species but not against relevant pathogens. Such antidotes selectively protected Bacteroides species from erythromycin treatment in human-stool-derived communities and gnotobiotic mice. These findings illluminate the activity spectra of antibiotics in commensal bacteria and suggest strategies to circumvent their adverse effects on the gut microbiota., (© 2021. The Author(s), under exclusive licence to Springer Nature Limited.)- Published
- 2021
- Full Text
- View/download PDF
10. Bioaccumulation of therapeutic drugs by human gut bacteria.
- Author
-
Klünemann M, Andrejev S, Blasche S, Mateus A, Phapale P, Devendran S, Vappiani J, Simon B, Scott TA, Kafkia E, Konstantinidis D, Zirngibl K, Mastrorilli E, Banzhaf M, Mackmull MT, Hövelmann F, Nesme L, Brochado AR, Maier L, Bock T, Periwal V, Kumar M, Kim Y, Tramontano M, Schultz C, Beck M, Hennig J, Zimmermann M, Sévin DC, Cabreiro F, Savitski MM, Bork P, Typas A, and Patil KR
- Subjects
- Animals, Antidepressive Agents metabolism, Antidepressive Agents pharmacokinetics, Caenorhabditis elegans metabolism, Cells metabolism, Click Chemistry, Duloxetine Hydrochloride adverse effects, Duloxetine Hydrochloride pharmacokinetics, Humans, Metabolomics, Models, Animal, Proteomics, Reproducibility of Results, Bacteria metabolism, Bioaccumulation, Duloxetine Hydrochloride metabolism, Gastrointestinal Microbiome physiology
- Abstract
Bacteria in the gut can modulate the availability and efficacy of therapeutic drugs. However, the systematic mapping of the interactions between drugs and bacteria has only started recently
1 and the main underlying mechanism proposed is the chemical transformation of drugs by microorganisms (biotransformation). Here we investigated the depletion of 15 structurally diverse drugs by 25 representative strains of gut bacteria. This revealed 70 bacteria-drug interactions, 29 of which had not to our knowledge been reported before. Over half of the new interactions can be ascribed to bioaccumulation; that is, bacteria storing the drug intracellularly without chemically modifying it, and in most cases without the growth of the bacteria being affected. As a case in point, we studied the molecular basis of bioaccumulation of the widely used antidepressant duloxetine by using click chemistry, thermal proteome profiling and metabolomics. We find that duloxetine binds to several metabolic enzymes and changes the metabolite secretion of the respective bacteria. When tested in a defined microbial community of accumulators and non-accumulators, duloxetine markedly altered the composition of the community through metabolic cross-feeding. We further validated our findings in an animal model, showing that bioaccumulating bacteria attenuate the behavioural response of Caenorhabditis elegans to duloxetine. Together, our results show that bioaccumulation by gut bacteria may be a common mechanism that alters drug availability and bacterial metabolism, with implications for microbiota composition, pharmacokinetics, side effects and drug responses, probably in an individual manner., (© 2021. The Author(s), under exclusive licence to Springer Nature Limited.)- Published
- 2021
- Full Text
- View/download PDF
11. Author Correction: Methods and open-source toolkit for analyzing and visualizing challenge results.
- Author
-
Wiesenfarth M, Reinke A, Landman BA, Eisenmann M, Saiz LA, Cardoso MJ, Maier-Hein L, and Kopp-Schneider A
- Published
- 2021
- Full Text
- View/download PDF
12. Heidelberg colorectal data set for surgical data science in the sensor operating room.
- Author
-
Maier-Hein L, Wagner M, Ross T, Reinke A, Bodenstedt S, Full PM, Hempe H, Mindroc-Filimon D, Scholz P, Tran TN, Bruno P, Kisilenko A, Müller B, Davitashvili T, Capek M, Tizabi MD, Eisenmann M, Adler TJ, Gröhl J, Schellenberg M, Seidlitz S, Lai TYE, Pekdemir B, Roethlingshoefer V, Both F, Bittel S, Mengler M, Mündermann L, Apitz M, Kopp-Schneider A, Speidel S, Nickel F, Probst P, Kenngott HG, and Müller-Stich BP
- Subjects
- Data Science, Humans, Laparoscopy, Colon, Sigmoid surgery, Proctocolectomy, Restorative instrumentation, Rectum surgery, Surgical Navigation Systems
- Abstract
Image-based tracking of medical instruments is an integral part of surgical data science applications. Previous research has addressed the tasks of detecting, segmenting and tracking medical instruments based on laparoscopic video data. However, the proposed methods still tend to fail when applied to challenging images and do not generalize well to data they have not been trained on. This paper introduces the Heidelberg Colorectal (HeiCo) data set - the first publicly available data set enabling comprehensive benchmarking of medical instrument detection and segmentation algorithms with a specific emphasis on method robustness and generalization capabilities. Our data set comprises 30 laparoscopic videos and corresponding sensor data from medical devices in the operating room for three different types of laparoscopic surgery. Annotations include surgical phase labels for all video frames as well as information on instrument presence and corresponding instance-wise segmentation masks for surgical instruments (if any) in more than 10,000 individual frames. The data has successfully been used to organize international competitions within the Endoscopic Vision Challenges 2017 and 2019.
- Published
- 2021
- Full Text
- View/download PDF
13. Learned spectral decoloring enables photoacoustic oximetry.
- Author
-
Gröhl J, Kirchner T, Adler TJ, Hacker L, Holzwarth N, Hernández-Aguilera A, Herrera MA, Santos E, Bohndiek SE, and Maier-Hein L
- Abstract
The ability of photoacoustic imaging to measure functional tissue properties, such as blood oxygenation sO[Formula: see text], enables a wide variety of possible applications. sO[Formula: see text] can be computed from the ratio of oxyhemoglobin HbO[Formula: see text] and deoxyhemoglobin Hb, which can be distuinguished by multispectral photoacoustic imaging due to their distinct wavelength-dependent absorption. However, current methods for estimating sO[Formula: see text] yield inaccurate results in realistic settings, due to the unknown and wavelength-dependent influence of the light fluence on the signal. In this work, we propose learned spectral decoloring to enable blood oxygenation measurements to be inferred from multispectral photoacoustic imaging. The method computes sO[Formula: see text] pixel-wise, directly from initial pressure spectra [Formula: see text], which represent initial pressure values at a fixed spatial location [Formula: see text] over all recorded wavelengths [Formula: see text]. The method is compared to linear unmixing approaches, as well as pO[Formula: see text] and blood gas analysis reference measurements. Experimental results suggest that the proposed method is able to obtain sO[Formula: see text] estimates from multispectral photoacoustic measurements in silico, in vitro, and in vivo.
- Published
- 2021
- Full Text
- View/download PDF
14. Methods and open-source toolkit for analyzing and visualizing challenge results.
- Author
-
Wiesenfarth M, Reinke A, Landman BA, Eisenmann M, Saiz LA, Cardoso MJ, Maier-Hein L, and Kopp-Schneider A
- Abstract
Grand challenges have become the de facto standard for benchmarking image analysis algorithms. While the number of these international competitions is steadily increasing, surprisingly little effort has been invested in ensuring high quality design, execution and reporting for these international competitions. Specifically, results analysis and visualization in the event of uncertainties have been given almost no attention in the literature. Given these shortcomings, the contribution of this paper is two-fold: (1) we present a set of methods to comprehensively analyze and visualize the results of single-task and multi-task challenges and apply them to a number of simulated and real-life challenges to demonstrate their specific strengths and weaknesses; (2) we release the open-source framework challengeR as part of this work to enable fast and wide adoption of the methodology proposed in this paper. Our approach offers an intuitive way to gain important insights into the relative and absolute performance of algorithms, which cannot be revealed by commonly applied visualization techniques. This is demonstrated by the experiments performed in the specific context of biomedical image analysis challenges. Our framework could thus become an important tool for analyzing and visualizing challenge results in the field of biomedical image analysis and beyond.
- Published
- 2021
- Full Text
- View/download PDF
15. High resolution MRI for quantitative assessment of inferior alveolar nerve impairment in course of mandible fractures: an imaging feasibility study.
- Author
-
Burian E, Sollmann N, Ritschl LM, Palla B, Maier L, Zimmer C, Probst F, Fichter A, Miloro M, and Probst M
- Subjects
- Adolescent, Adult, Female, Humans, Male, Mandible physiopathology, Mandibular Fractures pathology, Mandibular Nerve pathology, Middle Aged, Tomography, X-Ray Computed, Trigeminal Nerve Injuries diagnostic imaging, Trigeminal Nerve Injuries pathology, Young Adult, Magnetic Resonance Imaging, Mandible diagnostic imaging, Mandibular Fractures diagnostic imaging, Mandibular Nerve diagnostic imaging
- Abstract
The purpose of this study was to evaluate a magnetic resonance imaging (MRI) protocol for direct visualization of the inferior alveolar nerve in the setting of mandibular fractures. Fifteen patients suffering from unilateral mandible fractures involving the inferior alveolar nerve (15 affected IAN and 15 unaffected IAN from contralateral side) were examined on a 3 T scanner (Elition, Philips Healthcare, Best, the Netherlands) and compared with 15 healthy volunteers (30 IAN in total). The sequence protocol consisted of a 3D STIR, 3D DESS and 3D T1 FFE sequence. Apparent nerve-muscle contrast-to-noise ratio (aNMCNR), apparent signal-to-noise ratio (aSNR), nerve diameter and fracture dislocation were evaluated by two radiologists and correlated with nerve impairment. Furthermore, dislocation as depicted by MRI was compared to computed tomography (CT) images. Patients with clinically evident nerve impairment showed a significant increase of aNMCNR, aSNR and nerve diameter compared to healthy controls and to the contralateral side (p < 0.05). Furthermore, the T1 FFE sequence allowed dislocation depiction comparable to CT. This prospective study provides a rapid imaging protocol using the 3D STIR and 3D T1 FFE sequence that can directly assess both mandible fractures and IAN damage. In patients with hypoesthesia following mandibular fractures, increased aNMCNR, aSNR and nerve diameter on MRI imaging may help identify patients with a risk of prolonged or permanent hypoesthesia at an early time.
- Published
- 2020
- Full Text
- View/download PDF
16. Escherichia coli limits Salmonella Typhimurium infections after diet shifts and fat-mediated microbiota perturbation in mice.
- Author
-
Wotzka SY, Kreuzer M, Maier L, Arnoldini M, Nguyen BD, Brachmann AO, Berthold DL, Zünd M, Hausmann A, Bakkeren E, Hoces D, Gül E, Beutler M, Dolowschiak T, Zimmermann M, Fuhrer T, Moor K, Sauer U, Typas A, Piel J, Diard M, Macpherson AJ, Stecher B, Sunagawa S, Slack E, and Hardt WD
- Subjects
- Animal Feed, Animals, Bile Acids and Salts administration & dosage, Female, Host-Pathogen Interactions, Male, Mice, Mice, Inbred C57BL, Oleic Acids administration & dosage, Dietary Fats administration & dosage, Escherichia coli physiology, Gastrointestinal Microbiome, Microbial Interactions, Salmonella typhimurium physiology
- Abstract
The microbiota confers colonization resistance, which blocks Salmonella gut colonization
1 . As diet affects microbiota composition, we studied whether food composition shifts enhance susceptibility to infection. Shifting mice to diets with reduced fibre or elevated fat content for 24 h boosted Salmonella Typhimurium or Escherichia coli gut colonization and plasmid transfer. Here, we studied the effect of dietary fat. Colonization resistance was restored within 48 h of return to maintenance diet. Salmonella gut colonization was also boosted by two oral doses of oleic acid or bile salts. These pathogen blooms required Salmonella's AcrAB/TolC-dependent bile resistance. Our data indicate that fat-elicited bile promoted Salmonella gut colonization. Both E. coli and Salmonella show much higher bile resistance than the microbiota. Correspondingly, competitive E. coli can be protective in the fat-challenged gut. Diet shifts and fat-elicited bile promote S. Typhimurium gut infections in mice lacking E. coli in their microbiota. This mouse model may be useful for studying pathogen-microbiota-host interactions, the protective effect of E. coli, to analyse the spread of resistance plasmids and assess the impact of food components on the infection process.- Published
- 2019
- Full Text
- View/download PDF
17. Photoacoustics can image spreading depolarization deep in gyrencephalic brain.
- Author
-
Kirchner T, Gröhl J, Herrera MA, Adler T, Hernández-Aguilera A, Santos E, and Maier-Hein L
- Subjects
- Animals, Cerebral Cortex blood supply, Cerebral Cortex drug effects, Cortical Spreading Depression drug effects, Electrocorticography, Female, Gray Matter blood supply, Gray Matter drug effects, Hemodynamics drug effects, Hemodynamics physiology, Humans, Neuroimaging instrumentation, Oxygen physiology, Potassium Chloride pharmacology, Swine, Cerebral Cortex diagnostic imaging, Gray Matter diagnostic imaging, Neuroimaging methods, Oxygen analysis, Photoacoustic Techniques instrumentation, Ultrasonography instrumentation
- Abstract
Spreading depolarization (SD) is a self-propagating wave of near-complete neuronal depolarization that is abundant in a wide range of neurological conditions, including stroke. SD was only recently documented in humans and is now considered a therapeutic target for brain injury, but the mechanisms related to SD in complex brains are not well understood. While there are numerous approaches to interventional imaging of SD on the exposed brain surface, measuring SD deep in brain is so far only possible with low spatiotemporal resolution and poor contrast. Here, we show that photoacoustic imaging enables the study of SD and its hemodynamics deep in the gyrencephalic brain with high spatiotemporal resolution. As rapid neuronal depolarization causes tissue hypoxia, we achieve this by continuously estimating blood oxygenation with an intraoperative hybrid photoacoustic and ultrasonic imaging system. Due to its high resolution, promising imaging depth and high contrast, this novel approach to SD imaging can yield new insights into SD and thereby lead to advances in stroke, and brain injury research.
- Published
- 2019
- Full Text
- View/download PDF
18. Extensive impact of non-antibiotic drugs on human gut bacteria.
- Author
-
Maier L, Pruteanu M, Kuhn M, Zeller G, Telzerow A, Anderson EE, Brochado AR, Fernandez KC, Dose H, Mori H, Patil KR, Bork P, and Typas A
- Subjects
- Anti-Bacterial Agents pharmacology, Antipsychotic Agents pharmacology, Bacteria classification, Bacteria growth & development, Cohort Studies, High-Throughput Screening Assays, Humans, In Vitro Techniques, Microbial Viability drug effects, Reproducibility of Results, Symbiosis drug effects, Bacteria drug effects, Drug Evaluation, Preclinical, Drug Resistance, Bacterial drug effects, Gastrointestinal Microbiome drug effects
- Abstract
A few commonly used non-antibiotic drugs have recently been associated with changes in gut microbiome composition, but the extent of this phenomenon is unknown. Here, we screened more than 1,000 marketed drugs against 40 representative gut bacterial strains, and found that 24% of the drugs with human targets, including members of all therapeutic classes, inhibited the growth of at least one strain in vitro. Particular classes, such as the chemically diverse antipsychotics, were overrepresented in this group. The effects of human-targeted drugs on gut bacteria are reflected on their antibiotic-like side effects in humans and are concordant with existing human cohort studies. Susceptibility to antibiotics and human-targeted drugs correlates across bacterial species, suggesting common resistance mechanisms, which we verified for some drugs. The potential risk of non-antibiotics promoting antibiotic resistance warrants further exploration. Our results provide a resource for future research on drug-microbiome interactions, opening new paths for side effect control and drug repurposing, and broadening our view of antibiotic resistance.
- Published
- 2018
- Full Text
- View/download PDF
19. Salt-responsive gut commensal modulates T H 17 axis and disease.
- Author
-
Wilck N, Matus MG, Kearney SM, Olesen SW, Forslund K, Bartolomaeus H, Haase S, Mähler A, Balogh A, Markó L, Vvedenskaya O, Kleiner FH, Tsvetkov D, Klug L, Costea PI, Sunagawa S, Maier L, Rakova N, Schatz V, Neubert P, Frätzer C, Krannich A, Gollasch M, Grohme DA, Côrte-Real BF, Gerlach RG, Basic M, Typas A, Wu C, Titze JM, Jantsch J, Boschmann M, Dechend R, Kleinewietfeld M, Kempa S, Bork P, Linker RA, Alm EJ, and Müller DN
- Subjects
- Animals, Autoimmunity drug effects, Blood Pressure drug effects, Disease Models, Animal, Encephalomyelitis, Autoimmune, Experimental chemically induced, Encephalomyelitis, Autoimmune, Experimental microbiology, Encephalomyelitis, Autoimmune, Experimental pathology, Encephalomyelitis, Autoimmune, Experimental therapy, Feces microbiology, Humans, Hypertension chemically induced, Indoleacetic Acids metabolism, Indoles metabolism, Intestines cytology, Intestines drug effects, Intestines immunology, Intestines microbiology, Lactobacillus immunology, Lymphocyte Activation drug effects, Lymphocyte Count, Male, Mice, Pilot Projects, Sodium Chloride administration & dosage, Symbiosis, Th17 Cells cytology, Tryptophan metabolism, Gastrointestinal Microbiome drug effects, Lactobacillus drug effects, Lactobacillus isolation & purification, Sodium Chloride pharmacology, Th17 Cells drug effects, Th17 Cells immunology
- Abstract
A Western lifestyle with high salt consumption can lead to hypertension and cardiovascular disease. High salt may additionally drive autoimmunity by inducing T helper 17 (T
H 17) cells, which can also contribute to hypertension. Induction of TH 17 cells depends on gut microbiota; however, the effect of salt on the gut microbiome is unknown. Here we show that high salt intake affects the gut microbiome in mice, particularly by depleting Lactobacillus murinus. Consequently, treatment of mice with L. murinus prevented salt-induced aggravation of actively induced experimental autoimmune encephalomyelitis and salt-sensitive hypertension by modulating TH 17 cells. In line with these findings, a moderate high-salt challenge in a pilot study in humans reduced intestinal survival of Lactobacillus spp., increased TH 17 cells and increased blood pressure. Our results connect high salt intake to the gut-immune axis and highlight the gut microbiome as a potential therapeutic target to counteract salt-sensitive conditions.- Published
- 2017
- Full Text
- View/download PDF
20. Circular RNAs are a large class of animal RNAs with regulatory potency.
- Author
-
Memczak S, Jens M, Elefsinioti A, Torti F, Krueger J, Rybak A, Maier L, Mackowiak SD, Gregersen LH, Munschauer M, Loewer A, Ziebold U, Landthaler M, Kocks C, le Noble F, and Rajewsky N
- Subjects
- Animals, Autoantigens genetics, Autoantigens metabolism, Binding Sites, Brain metabolism, Caenorhabditis elegans genetics, Caenorhabditis elegans metabolism, Cell Line, Conserved Sequence, Female, HEK293 Cells, Humans, Male, Mice, MicroRNAs genetics, MicroRNAs metabolism, Nerve Tissue Proteins genetics, Nerve Tissue Proteins metabolism, RNA genetics, RNA, Circular, Zebrafish embryology, Zebrafish genetics, Zebrafish metabolism, Gene Expression Regulation, RNA metabolism
- Abstract
Circular RNAs (circRNAs) in animals are an enigmatic class of RNA with unknown function. To explore circRNAs systematically, we sequenced and computationally analysed human, mouse and nematode RNA. We detected thousands of well-expressed, stable circRNAs, often showing tissue/developmental-stage-specific expression. Sequence analysis indicated important regulatory functions for circRNAs. We found that a human circRNA, antisense to the cerebellar degeneration-related protein 1 transcript (CDR1as), is densely bound by microRNA (miRNA) effector complexes and harbours 63 conserved binding sites for the ancient miRNA miR-7. Further analyses indicated that CDR1as functions to bind miR-7 in neuronal tissues. Human CDR1as expression in zebrafish impaired midbrain development, similar to knocking down miR-7, suggesting that CDR1as is a miRNA antagonist with a miRNA-binding capacity ten times higher than any other known transcript. Together, our data provide evidence that circRNAs form a large class of post-transcriptional regulators. Numerous circRNAs form by head-to-tail splicing of exons, suggesting previously unrecognized regulatory potential of coding sequences.
- Published
- 2013
- Full Text
- View/download PDF
21. Stabilization of cooperative virulence by the expression of an avirulent phenotype.
- Author
-
Diard M, Garcia V, Maier L, Remus-Emsermann MN, Regoes RR, Ackermann M, and Hardt WD
- Subjects
- Animals, Host-Pathogen Interactions, Inflammation microbiology, Inflammation pathology, Intestines microbiology, Mice, Mice, Inbred C57BL, Mutation, Salmonella Infections microbiology, Salmonella Infections prevention & control, Salmonella Infections transmission, Salmonella typhimurium genetics, Salmonella typhimurium growth & development, Virulence genetics, Virulence physiology, Virulence Factors genetics, Virulence Factors metabolism, Biological Evolution, Phenotype, Salmonella typhimurium pathogenicity
- Abstract
Pathogens often infect hosts through collective actions: they secrete growth-promoting compounds or virulence factors, or evoke host reactions that fuel the colonization of the host. Such behaviours are vulnerable to the rise of mutants that benefit from the collective action without contributing to it; how these behaviours can be evolutionarily stable is not well understood. We address this question using the intestinal pathogen Salmonella enterica serovar Typhimurium (hereafter termed S. typhimurium), which manipulates its host to induce inflammation, and thereby outcompetes the commensal microbiota. Notably, the virulence factors needed for host manipulation are expressed in a bistable fashion, leading to a slow-growing subpopulation that expresses virulence genes, and a fast-growing subpopulation that is phenotypically avirulent. Here we show that the expression of the genetically identical but phenotypically avirulent subpopulation is essential for the evolutionary stability of virulence in this pathogen. Using a combination of mathematical modelling, experimental evolution and competition experiments we found that within-host evolution leads to the emergence of mutants that are genetically avirulent and fast-growing. These mutants are defectors that exploit inflammation without contributing to it. In infection experiments initiated with wild-type S. typhimurium, defectors increase only slowly in frequency. In a genetically modified S. typhimurium strain in which the phenotypically avirulent subpopulation is reduced in size, defectors rise more rapidly, inflammation ceases prematurely, and S. typhimurium is quickly cleared from the gut. Our results establish that host manipulation by S. typhimurium is a cooperative trait that is vulnerable to the rise of avirulent defectors; the expression of a phenotypically avirulent subpopulation that grows as fast as defectors slows down this process, and thereby promotes the evolutionary stability of virulence. This points to a key role of bistable virulence gene expression in stabilizing cooperative virulence and may lead the way to new approaches for controlling pathogens.
- Published
- 2013
- Full Text
- View/download PDF
22. Superallowed Gamow-Teller decay of the doubly magic nucleus 100Sn.
- Author
-
Hinke CB, Böhmer M, Boutachkov P, Faestermann T, Geissel H, Gerl J, Gernhäuser R, Górska M, Gottardo A, Grawe H, Grębosz JL, Krücken R, Kurz N, Liu Z, Maier L, Nowacki F, Pietri S, Podolyák Z, Sieja K, Steiger K, Straub K, Weick H, Wollersheim HJ, Woods PJ, Al-Dahan N, Alkhomashi N, Ataç A, Blazhev A, Braun NF, Čeliković IT, Davinson T, Dillmann I, Domingo-Pardo C, Doornenbal PC, de France G, Farrelly GF, Farinon F, Goel N, Habermann TC, Hoischen R, Janik R, Karny M, Kaşkaş A, Kojouharov IM, Kröll T, Litvinov Y, Myalski S, Nebel F, Nishimura S, Nociforo C, Nyberg J, Parikh AR, Procházka A, Regan PH, Rigollet C, Schaffner H, Scheidenberger C, Schwertel S, Söderström PA, Steer SJ, Stolz A, and Strmeň P
- Abstract
The shell structure of atomic nuclei is associated with 'magic numbers' and originates in the nearly independent motion of neutrons and protons in a mean potential generated by all nucleons. During β(+)-decay, a proton transforms into a neutron in a previously not fully occupied orbital, emitting a positron-neutrino pair with either parallel or antiparallel spins, in a Gamow-Teller or Fermi transition, respectively. The transition probability, or strength, of a Gamow-Teller transition depends sensitively on the underlying shell structure and is usually distributed among many states in the neighbouring nucleus. Here we report measurements of the half-life and decay energy for the decay of (100)Sn, the heaviest doubly magic nucleus with equal numbers of protons and neutrons. In the β-decay of (100)Sn, a large fraction of the strength is observable because of the large decay energy. We determine the largest Gamow-Teller strength so far measured in allowed nuclear β-decay, establishing the 'superallowed' nature of this Gamow-Teller transition. The large strength and the low-energy states in the daughter nucleus, (100)In, are well reproduced by modern, large-scale shell model calculations.
- Published
- 2012
- Full Text
- View/download PDF
23. Amiloride-sensitive nasal potential difference is not changed by estradiol and progesterone replacement but relates to BPD or death in a randomized trial on preterm infants.
- Author
-
Thome UH, Bischoff A, Maier L, Pohlandt F, and Trotter A
- Subjects
- Animals, Female, Gestational Age, Humans, Infant, Infant, Newborn, Male, Pregnancy, Retrospective Studies, Amiloride pharmacology, Bronchopulmonary Dysplasia drug therapy, Bronchopulmonary Dysplasia metabolism, Bronchopulmonary Dysplasia mortality, Estradiol therapeutic use, Infant, Very Low Birth Weight, Nasal Mucosa drug effects, Nasal Mucosa metabolism, Progesterone therapeutic use, Sodium Channel Blockers pharmacology
- Abstract
Postnatal replacement of placental estradiol (E2) and progesterone (P) in preterm infants may improve lung function, possibly mediated through enhanced epithelial Na(+) transport and alveolar fluid clearance. Preterm infants of <29 wk gestational age and <1000 g birth weight requiring mechanical ventilation within 12 h of birth were randomized to receive either 2.5 mg/kg E2 and 22.5 mg/kg P per day (E2/P), or vehicle placebo. Epithelial Na(+) transport was assessed in 29 infants by measuring total nasal potential difference (NPD) and amiloride-sensitive NPD (ASNPD) on postnatal days of life 1, 3, 5, and 7, and mean values of all four measurements were calculated. Bronchopulmonary dysplasia (BPD) was defined as need for supplemental oxygen (goal Sa(O2) 90%) or mechanical ventilation at 36 wk corrected postmenstrual age. Mean ASNPD was -6.5 +/- 2.8 mV in infants receiving E2/P and -6.1 +/- 2.6 mV in infants receiving placebo (not significant). NPD was -10.6 +/- 3.8 mV and -10.7 +/- 3.6 mV, respectively. The ASNPD was significantly higher in infants surviving without BPD (-7.1 +/- 2.5 mV) than in infants developing BPD or not surviving (-5.2 +/- 2.4 mV). In conclusion, ASNPD is not changed by postnatal replacement of E2 and P. Infants at high risk of developing BPD had lower ASNPD values in the immediate postnatal period.
- Published
- 2006
- Full Text
- View/download PDF
24. Prenatal estrogen and progesterone deprivation impairs alveolar formation and fluid clearance in newborn piglets.
- Author
-
Trotter A, Ebsen M, Kiossis E, Meggle S, Kueppers E, Beyer C, Pohlandt F, Maier L, and Thome UH
- Subjects
- Amiloride pharmacology, Animals, Estradiol analogs & derivatives, Estradiol pharmacology, Estrenes pharmacology, Estrogen Antagonists pharmacology, Estrogen Receptor Modulators pharmacology, Female, Fulvestrant, Male, Progesterone antagonists & inhibitors, Pulmonary Alveoli chemistry, Pulmonary Alveoli drug effects, Receptors, Estrogen analysis, Receptors, Estrogen antagonists & inhibitors, Receptors, Estrogen drug effects, Receptors, Progesterone analysis, Receptors, Progesterone antagonists & inhibitors, Receptors, Progesterone drug effects, Sodium Channel Blockers pharmacology, Swine, Animals, Newborn metabolism, Body Fluids metabolism, Estrogens physiology, Progesterone physiology, Pulmonary Alveoli growth & development, Pulmonary Alveoli metabolism
- Abstract
Exposure to high levels of estradiol (E2) and progesterone (P) derived from the fetoplacentomaternal unit during the last trimester of pregnancy may play a crucial role in prenatal lung development and immediate postnatal alveolar fluid clearance (AFC). To measure prenatal alveolar formation and postnatal amiloride-sensitive AFC after pharmacological deprivation of E2 and P in utero, fetuses from five sows received an intramuscular depot injection of the E2 receptor blocker ICI 182.780 (ICI) and the P receptor blocker RTI 3021-022 (RTI) and fetuses of five other sows received a placebo injection (control group) during a laparotomy at 90 d of gestation (term gestation, 115 d). Piglets were delivered by cesarean section on d 114 of gestation. Of 95 live-born piglets, 35 were mechanically ventilated. The airways of the right lower lobe were isolated by a balloon catheter wedged in the bronchus and 5% albumin in 0.9% NaCl with or without 1 mmol/L amiloride was instilled. Amiloride-sensitive AFC was calculated from the protein concentration changes in fluid recovered after 120 min as the percentage of absorbed fluid. Lungs were removed under standardized conditions to perform alveolar counts. Prenatal treatment with ICI and RTI resulted in a significantly lower amiloride-sensitive AFC (median, 31%; min-max, -4-58) than placebo (74%, 18-231). Median alveolar counts per visual field were significantly lower in piglets that were exposed to ICI and RTI (38, 21-78) compared with placebo (56, 32-113). We conclude that prenatal E2 and P deprivation significantly impaired alveolar formation and amiloride-sensitive AFC.
- Published
- 2006
- Full Text
- View/download PDF
25. 17Beta-estradiol and progesterone supplementation in extremely low-birth-weight infants.
- Author
-
Trotter A, Maier L, Grill HJ, Wudy SA, and Pohlandt F
- Subjects
- Dietary Supplements, Estradiol administration & dosage, Estradiol blood, Female, Fetal Blood physiology, Gestational Age, Humans, Infant, Newborn, Parenteral Nutrition, Pilot Projects, Pregnancy blood, Progesterone administration & dosage, Progesterone blood, Regression Analysis, Estradiol therapeutic use, Infant, Very Low Birth Weight, Progesterone therapeutic use
- Abstract
During pregnancy, 17beta-estradiol (E2) and progesterone (P) plasma concentrations increase up to 100-fold. The fetus is exposed to these increasing amounts of E2 and P. Within 1 d after delivery, E2 and P concentrations fall to nonpregnancy concentrations in the mother and the infant. Extremely premature infants are cut off from the placental supply of E2 and P at a very early developmental stage, and therefore they suffer from this deprivation for a longer period than infants born at term. Nothing is known about the consequences of this deprivation. The purpose of this study was to investigate how intrauterine concentrations of E2 and P could be maintained after birth. In 13 infants with a median gestational age of 26.4 wk (24.1-28.7), a phospholipid-stabilized soybean oil emulsion available for parenteral nutrition that contains different amounts of E2 and P was continuously administered, starting within the first postnatal hours. The supplementation was continued as long as venous access was indicated but not longer than 6 wk (median 20 d, 12-44). To maintain intrauterine plasma concentrations of 2000-6000 pg/mL E2 and 300-600 ng/mL P, 2.30 mg x kg(-1) x d(-1) E2 (1.13-3.42 mg x kg(-1) x d(-1)) and 21.20 mg x kg(-1) x d(-1) P (11.23-27.36 mg x kg(-1) x d(-1)) were needed. We conclude that supplementation of E2 and P to maintain intrauterine concentrations in extremely premature infants is possible intravenously. The infants in this study are enrolled in a randomized, controlled pilot study to evaluate the potential benefits of E2 and P supplementation.
- Published
- 1999
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.