1. Aminoacyl-transferases and the N-end rule pathway of prokaryotic/eukaryotic specificity in a human pathogen
- Author
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Ronggui Hu, Alexander Varshavsky, Konstantin I. Piatkov, Joon Haeng Rhee, Emmanuelle Graciet, and Erich M. Schwarz
- Subjects
Proteolysis ,N-end rule ,medicine.disease_cause ,Models, Biological ,Conserved sequence ,Evolution, Molecular ,Ubiquitin ,medicine ,Transferase ,Humans ,Amino Acid Sequence ,Cysteine ,Biology ,Escherichia coli ,Peptide sequence ,Vibrio vulnificus ,Conserved Sequence ,Phylogeny ,Multidisciplinary ,biology ,medicine.diagnostic_test ,Biological Sciences ,Aminoacyltransferases ,Malaria ,Eukaryotic Cells ,Proteasome ,Biochemistry ,Prokaryotic Cells ,biology.protein ,Tyrosine ,Caltech Library Services ,Half-Life - Abstract
The N-end rule relates the in vivo half-life of a protein to the identity of its N-terminal residue. Primary destabilizing N-terminal residues (Nd p ) are recognized directly by the targeting machinery. The recognition of secondary destabilizing N-terminal residues (Nd s ) is preceded by conjugation of an Nd p residue to Nd s of a polypeptide substrate. In eukaryotes, ATE1 -encoded arginyl-transferases (R D,E,C* -transferases) conjugate Arg (R), an Nd p residue, to Nd s residues Asp (D), Glu (E), or oxidized Cys residue (C*). Ubiquitin ligases recognize the N-terminal Arg of a substrate and target the (ubiquitylated) substrate to the proteasome. In prokaryotes such as Escherichia coli , Nd p residues Leu (L) or Phe (F) are conjugated, by the aat -encoded Leu/Phe-transferase (L/F K,R -transferase), to N-terminal Arg or Lys, which are Nd s in prokaryotes but Nd p in eukaryotes. In prokaryotes, substrates bearing the Nd p residues Leu, Phe, Trp, or Tyr are degraded by the proteasome-like ClpAP protease. Despite enzymological similarities between eukaryotic R D,E,C* -transferases and prokaryotic L/F K,R -transferases, there is no significant sequelogy (sequence similarity) between them. We identified an aminoacyl-transferase, termed Bpt, in the human pathogen Vibrio vulnificus . Although it is a sequelog of eukaryotic R D,E,C* -transferases, this prokaryotic transferase exhibits a “hybrid” specificity, conjugating Nd p Leu to Nd s Asp or Glu. Another aminoacyl-transferase, termed ATEL1, of the eukaryotic pathogen Plasmodium falciparum , is a sequelog of prokaryotic L/F K,R -transferases (Aat), but has the specificity of eukaryotic R D,E,C* -transferases (ATE1). Phylogenetic analysis suggests that the substrate specificity of R-transferases arose by two distinct routes during the evolution of eukaryotes.
- Published
- 2006