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The development of new breeding strategies to find more sustainable and productive systems is a major challenge to cope with ceaseless increasing demands for vegetable oils, notably palm oil. Optimizing plant architecture to increase radiation interception efficiency could be an option for enhancing potential oil palm production. Indeed, studies in cereals showed great improvement of yields by altering plant architecture, in combination with agronomic practices. By analogy, we proposed to investigate the influence of oil palm architecture on the capacity of the plant to intercept light, by using 3D reconstructions and model-assisted evaluation of radiation-use efficiency. The first objective of this study was to analyse and model oil palm architecture and light interception taking into account genetic variability. A second objective was to explore the potential improvement in light capture and carbon assimilation by manipulating oil palm leaf traits and propose architectural ideotypes. Data were collected in Sumatra, Indonesia, on five progenies (total of 60 palms), in order to describe the aerial architecture from leaflet to crown scales. Allometric relationships were applied to model these traits according to ontogenetic gradients and leaf position within the crown. The methodology allowed reconstructing virtual oil palms at different stages over plant development. Additionally, the allometric-based approach was coupled to mixed-effect models in order to integrate inter and intra progeny variability through progeny-specific parameters. The model thus allowed simulating the specificity of plant architecture for a given progeny while including observed inter-individual variability. The architectural model, once parameterized for the different progenies, was then implemented in AMAPstudio to generate 3D mock-ups and estimate light interception efficiency, from individual to stand scales. Model validations were performed at different scales. Firstly at organ scale, the geometry of the stem, the leaves and the leaflets were compared between virtual mock-ups and actual plants measured in the field. Secondly, at plant scale with indicators derived from terrestrial laser scanning (TLS) to assess crown dimensions and porosity. These indicators integrated topological and geometrical information related to the amount of light intercepted by an individual. Finally, validations were performed at plot scale using hemispherical photographs (HP) to assess the variability of canopy openness for the five studied progenies. Significant differences in leaf geometry (petiole length, density of leaflets and rachis curvature) and leaflets morphology (gradients of leaflets length and width) were detected between and within progenies, and were accurately simulated by the modelling approach. The comparison of plant area obtained from TLS and virtual TLS highlighted the capacity of the model to generate realistic 3D mock-ups. The architectural variabilities observed at plot scale between and within progenies were also satisfactory simulated. Finally, light interception estimated from the validated 3D mock-ups showed significant variations among the five progenies. Sensitivity analyses (Morris method and metamodelling approach) were then performed on a subset of architectural parameters in order to identify the architectural traits impacting light interception efficiency and potential carbon assimilation over plant development. Daily carbon assimilation was estimated with a photosynthesis model coupled to the radiative balance model, which enabled to integrate the temporal and spatial variations of photosynthetic organ irradiances. The most sensitive parameters over plant development were those related to leaf area (rachis length, number of leaflets, leaflets morphology), although fine attribute related to leaf geometry showed increasing influence when canopy got closed. In adult stand, optimized carbon assimilation was estimated on plants presenting a leaf area index (LAI) between 3.2 and 5.5 m2.m−2, with erect leaves, short rachis and petiole and high number of leaflet on rachis. Four ideotypes were identified with respect to carbon assimilation, exhibiting specific geometrical features that optimize light distribution within plant crown and reduce mutual shading among plants. In conclusion, this study highlighted how a functional-structural plant model (FSPM) can be used to virtually explore plant biology. In our case, the 3D model of oil palm, in its conception and its application, enabled the detection of the architectural traits genetically determined and influencing light interception. The limited number of traits revealed in the sensitivity analysis and the combination of traits proposed through ideotypes could guide future breeding programs. Forthcoming work will be dedicated to integrate in the modeling approach other physiological processes such as stomatal conductance and carbon partitioning. The improved FSPM could then be used to test different scenarios, for instance in climate change context with low radiations or frequent drought events. Similarly, the model could be used to investigate different planting patterns and intercropping systems and propose new multi-criteria ideotypes of oil palm.

Ce travail de thèse explore la signification écologique des variations inter et intraspécifiques de la croissance et des traits fonctionnels des espèces d’arbres de forêt tropicale guyanaise en relation avec les conditions d’éclairement. Nous démontrons que le syndrome de traits associé à la niche de régénération (durée de vie des feuilles plus longue et surface massique plus grande pour les espèces les plus tolérantes à l’ombre) est valide pour 14 espèces non pionnières et non strictement sciaphiles. La plasticité de la surface massique exprimée au stade juvénile chez les espèces les moins spécialisées pourrait refléter une adaptation à l’hétérogénéité de l’éclairement rencontrée au stade jeune et au cours des stades ontogéniques successifs. Les analyses multivariées mettent en évidence un lien étroit entre la durée de vie des feuilles, la profondeur relative du houppier et la niche de régénération. La plasticité de la profondeur du houppier observée chez les espèces les plus héliophiles ne peut pas être interprétée comme une réponse d’évitement de l’auto-ombrage. Nous montrons qu’elle correspond plutôt à un changement des taux de croissance et de mortalité des feuilles et des branches imposé par les conditions d’éclairement et se produisant à l’échelle de la plante entière. En ce qui concerne la variabilité intra-spécifique de la croissance des arbres adultes, nous avons observé une faible contribution de la compétition pour la lumière et un effet important de l’espèce. Nos résultats indiquent que ce patron de réponse résulte de la partition des espèces le long du gradient lumineux vertical et de la forte abondance d’espèces de petite taille peu sensibles à la compétition du fait de leur adaptation aux conditions lumineuses du sous-bois. La différentiation de niche de régénération et la stratification verticale des arbres adultes étayent l’hypothèse d’une partition de niche vis à vis de la ressource lumineuse dans les trois dimensions de la forêt tropicale humide., This study explores the ecological significance of inter- and intraspecific variations of growth and functional traits found in tropical tree species of French Guiana in relation to light regime. We demonstrate that the syndrome of leaf traits associated with light -niche (longer life span, higher leaf mass per area of more shade tolerant species) holds among a set of 14 species comprising no pioneer nor any shade specialist species. Our results further suggest that plasticity of leaf mass per area expressed at the sapling stage may reflect adaptation to the spatial heterogeneity of light conditions encountered both at the sapling stage and across ontogenetic stages. Multivariate analysis provides evidence of a close linkage between leaf lifespan, relative crown depth and light-niche optimum. The plasticity in relative crown depth observed in shade-intolerant species can not be interpreted in terms of self-shading avoidance. Rather, crown depth adjustment was found to be a consequence of changes in growth rates and mortality rates of leaves and branches imposed by current light conditions and occurring at the whole-plant level. At the adult stage, our results point to competition for light making an unexpectedly low contribution to individual tree growth variations, contrasting with a major effect of species identity. We argue that this pattern of variation is likely to result from the vertical niche partitioning of species and the high abundance of small-statured species that are moderately responsive to light competition (consistent with their adaptation to understorey conditions). Light-niche differentiation of juvenile trees and vertical stratification of adult trees provide strong evidence for light niche partitioning in the three-dimensional space of tropical forests.