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Despite garlic (Allium sativum L.) being recognized as the second most important species in the Allium genus, a limited number of varieties are available worldwide. Aiming to develop new purple garlic varieties, a representative sample was used to determine the extent of phenotypic variability for commercially desirable characteristics. Initially, 360 bolting bulbs were selected based on their size and abundant external scales. After further assessment, 243 bulbs were discarded due to undesirable traits such as light purple color, numerous small cloves, or damage from Fusarium spp. and mites. Although garlic reproduces asexually, each bulb was considered to represent a distinct family. Thus, 117 families were planted in a randomized complete block design during the 2021–2022 growing season. Physiological, morphological, and phenological traits were assessed for each family, along with damages caused by pests and pathogens. As a result of these evaluations, 103 families were selected for a second trial the following season. Due to increased selection pressure, only 23 families remained in the program at the end of the second trial. High variability was observed for most traits, with a strong influence from family lineage. Environmental conditions significantly impacted the performance of the families, highlighting the need to evaluate them under diverse environments. The high variability within the selected sample indicates a strong potential for developing new garlic varieties.

Maize productivity in the central belt plays a significant role in the food security of China. With good adaptability and disease resistance, landrace germplasm is important for maize improvement. A total of 246 landrace accessions were collected from the maize belts in central China and genotyped with the SLAF-seq (Specific-Locus Amplified Fragment Sequencing) method, and 144,650 SNPs were obtained for each accession. The results showed that the landrace accessions could be divided into three major groups. In the cluster results, Group I included 64 accessions, which mainly belonged to the landrace of White horse teeth; Group II had 71 accessions, which mainly belonged to the lantern red landraces; the rest of the 116 accessions were clustered as Group III, including a variety of types landraces and seven indicator inbred lines. In the results of structure and multidimensional scaling, the accessions’ attribution differed with the clusters, the main reason for which is the attribution change in intermediate germplasms. Linkage disequilibrium decay distance was 0.98 kb, which was much lower than that of temperate and tropical maize inbred lines, indicated the much higher genetic diversity of landrace germplasms. The results can help us select suitable landrace germplasms and speed up the process of inbred line development and maize improvement.

A growing interest in the recovery and enhancement of crops, particularly local varieties such as ‘Caaveiro’ wheat, has been observed. This study aims to investigate the impact of cultivation systems (organic versus conventional) on the nutritional quality of ‘Caaveiro’ flour and breads protected by the PGI “Pan Galego,” employing two fermentation methods (sourdough versus sourdough and biological yeast). Organic flour exhibited significantly higher levels of moisture, fat, sucrose, phosphorus (P), sodium (Na), and copper (Cu) while also exhibiting a lower total starch and zinc (Zn) content. Organic bread, produced using both fermentation methods, demonstrated significantly higher protein, carbohydrate, total, resistant, and rapidly digestible starch, ash, Na, P, iron (Fe), and Cu content. Additionally, they contained less moisture compared to conventional bread. Despite variations in nutritional characteristics based on the cultivation system, the organic approach proved effective at producing high-quality products with a positive environmental impact, which is highly appreciated by consumers.

The use of biostimulants consisting of plant growth-promoting rhizobacteria (PGPR) has been rapidly expanding in horticulture in recent years. In the current study, a novel mix of six Bacillus sp. strains (B. subtilis, B. pumilus, B. megaterium, B. amyloliquefaciens, B. velezensis, B. licheniformis) was tested as a PGPR biostimulant in two experiments with zucchini squash (Cucurbita pepo L.). The first experiment took place in greenhouse soil in winter, while the second experiment was conducted in an open field during summer. In both experiments, seeds of the local landrace “Kompokolokytho” and the commercial hybrid “ARO-800” were either inoculated or non-inoculated with the PGPR biostimulant. The application of the six Bacillus sp. strains increased both the vegetative growth and the yield of zucchini squash, and these effects were associated with significantly higher shoot phosphorus levels in both experiments and both genotypes. Furthermore, at the end of the cultivation, the colony-forming units of Bacillus sp. were appreciably higher in plants originating from inoculated compared to non-inoculated seeds, indicating that the tested mix of Bacillus sp. can be successfully applied through seed inoculation. “ARO-800” produced more vegetative and fruit biomass than “Κompokolokytho” under greenhouse cropping conditions, while in the open field crop, both genotypes performed equally. Presumably, this response occurred because “ARO-800” did not express its full yield potential in the open field due to stress imposed by the high summer temperatures, while the local landrace, which is traditionally grown in open fields, may be more resilient to stress conditions frequently encountered in open fields.

Nowadays, there is a global surge in interest surrounding novel foods, particularly sprouts, microgreens, and baby leaves, attributed to their rich content of bioactive compounds, such as phenolic derivatives, glucosinolates, and vitamins. This study delves into the impact of exogenously applied melatonin on novel foods derived from Brassica oleracea L. Two distinct cultivars of broccoli (Brassica oleracea var. italica Plenck), namely Sicilian sprouting broccoli (Broccolo nero) and a commercial variety (Cavolo Broccolo Ramoso Calabrese), were compared across the sprouts, microgreens, and baby leaves stages, adhering to organic farming practices. Various doses of melatonin (0, 50, and 100 µM) were administered at each harvesting stage. Plantlets were collected at different growth stages and assessed for key morphometric traits, including the weight, hypocotyl length, and cotyledon dimensions during the sprouts stage. For microgreens, the number and dimensions of the true leaves were recorded, while for baby leaves, the stem length was additionally measured. The analysis of glucosinolates was carried out using a high-performance liquid chromatograph with a diode array detector (HPLC-DAD). The results revealed significant variations among the experimental factors considered. Melatonin application significantly influenced the morphometric parameters at different growth stages, exhibiting notable variations in the weight, hypocotyl length, cotyledon width, and leaf width. The GLSs profile exhibited significant variations between the different growth stages and genotypes studied. Particularly noteworthy was the tendency for the GLSs content to be higher during the sprouts stage compared to the baby leaves stage, ranging from 24.07 to 4.61 µmol g−1 d.w. from sprouts to baby leaves, respectively.

The soybean is an important feed, industrial raw material, and food crop in the world due to its rich components. There is a long history of soybean cultivation with different types and rich resources in the Zhejiang province of China. It is important to understand genetic diversity as well as phenotypic variation for soybean breeding. The objective of this study was to analyze both genetic and phenotypic characteristics of the 78 soybean landraces collected, and to explore a potential advantage of germplasm resources for further application. These 78 autumn-type soybean landraces have been propagated, identified, and evaluated in both 2021 and 2022. There were agronomic, quality, and genetic variations according to the comprehensive analyses. There was a good consistency between seed size and seed coat color. There were significant differences of seed protein, fat, and sugar contents based upon the seed coat color. These soybean landraces were genotyped using 42 simple sequence repeat markers and then clustered into two groups. The two groups had a consistency with the seed coat color. This study gave us a combined understanding of both the phenotypic variation and the genetic diversity of the soybean landraces. Therefore, the reasonable crossing between different soybean types is highly recommended.

Agronomic biofortification of crops is a promising approach for the accumulation of Si in plant organs and can be achieved through the application of Si-containing fertilizers in the nutrient solution (NS) using a soilless technique. In the present research, a local variety of Cucumis melo L. called Carosello and two tomato hybrids, ‘Alfa 200’ (TA) and ‘Versus’ (TV), were cultivated in a floating system with three levels of Si (0, 50, and 100 mg·L−1) in the NS with the aim to study the Si translocation/accumulation in leaves, stems, and roots of these genotypes. In general, by adding Si to the NS, Si accumulation in plants increased. Regarding Si translocation, it was found that Carosello exhibited a better translocation capacity than tomato hybrids, and Si movement from roots to shoots was very much dependent on tomato genotypes. With the highest Si content in the NS, TA had a similar Si concentration in leaves and stems, while TV showed a greater Si concentration in leaves. In conclusion, Carosello landrace is confirmed as a good Si accumulator, while the tomato is confirmed as a species with low Si accumulation capacity. Nevertheless, the effectiveness of Si biofortification in tomatoes is very much dependent on the genotype.

Common cutworm (CCW) is an omnivorous insect causing severe yield losses in soybean crops. The seedling-stage mini-tray identification system with the damaged leaf percentage (DLP) as an indicator was used to evaluate antixenosis against CCW in the Chinese soybean landrace population (CSLRP) under three environments. Using the innovative restricted two-stage multi-locus genome-wide association study procedure (RTM-GWAS), 86 DLP QTLs with 243 alleles (2–11/QTL) were identified, including 66 main-effect loci with 203 alleles and 57 QTL-environment interaction loci with 172 alleles. Among the main-effect loci, 12 large-contribution loci (R2 ≥ 1%) explained 25.45% of the phenotypic variation (PV), and 54 small-contribution loci (R2 < 1%) explained 16.55% of the PV. This indicates that the CSLRP can be characterized with a DLP QTL-allele system complex that has not been found before, except for a few individual QTLs without alleles involved. From the DLP QTL-allele matrix, the recombination potentials expressed in the 25th percentile of the DLP of all possible crosses were predicted to be reduced by 41.5% as the maximum improvement and 14.2% as the maximum transgression, indicating great breeding potential in the antixenosis of the CSLRP. From the QTLs, 62 candidate genes were annotated, which were involved in eight biological function categories as a gene network of the DLP. Changing from susceptible to moderate plus resistant varieties in the CSLRP, 26 QTLs had 32 alleles involved, in which 19 genes were annotated from 25 QTL-alleles, including eight increased negative alleles on seven loci and 11 decreased positive alleles on 11 loci, showing the major genetic constitution changes for the antixenosis enhancement at the seedling stage in the CSLRP.

Global levels of biodiversity and dietary diversity are decreasing, leading to food and nutrition insecurity. This is partially due to the homogenization of the global food supply with commodity crops. The reintroduction or introduction of neglected and underutilized species, minor, forgotten, and indigenous crops and landrace varieties to the wider food systems and further diversification have been outlined as the future strategies for tackling the above by the United Nations and the Food and Agriculture Organization in their policy frameworks. Most of the above species/crops are marginalized and only used across local food systems and in research. With over 15,000 different seed banks and repositories worldwide, information transparency and communication are crucial for database searching and their effective utilization. Much confusion persists around the true nature of those plants, and this prohibits the efficient utilization of their economic potential. A linguistic corpus search and a systematic literature review were conducted using the six most popular collocates to the above terms, which were as follows: ancient, heirloom, heritage, traditional, orphan, and the more distinct term ‘landrace’. The results were interpreted using the Critical Discourse Analysis method. The definitions’ findings show that heirloom, heritage, and ancient are mainly used in the United Kingdom and USA, where they are used to describe ‘naturalized’ and ‘indigenized’ or ‘indigenous’ food crops with a strong affiliation to ‘family’ and the ‘act of passing seeds down from generation to generation’. Orphan crops, on the other hand, are often described as being ‘overlooked’ by growers and ‘underfunded’ by researchers. Landrace is most strongly affiliated with ‘locality’, ‘biocultural diversity’, and ‘indigenous’, and with genomics literature, where the characteristics are often discussed in the context of genetics and population biology. Contextualizing, most of the terms were found to be ‘arbitrary’ and ‘undefinable’ due to their continuing evolution in the socially accepted form of language, perhaps apart from landrace. The review has retrieved 58 definitions for the mentioned 6 terms, together with the primary key terms creating a tool to facilitate a better inter-sector communication and aid in policy.

The rice blast disease (caused by Magnaporthe oryzae) is a devastating disease in China. Understanding the molecular mechanisms of interaction for the cognate avirulence (AVR) gene with host resistance (R) genes, as well as their genetic evolution is essential for sustainable rice production. In the present study, we conducted a high-throughput nucleotide sequence polymorphism analysis of the AVR-Pi9 gene that was amplified from the rice-growing regions of the Yunnan Province in China. We detected the presence of seven novel haplotypes from 326 rice samples. In addition, the sequences of AVR-Pi9 were also obtained from two non-rice hosts, Eleusine coracana and Eleusine indica. The sequence analysis revealed the insertions and deletions in the coding and non-coding regions of the gene. The pathogenicity experiments of these haplotypes on previously characterized monogenic lines showed that the newly identified haplotypes are virulent in nature. The breakdown of resistance was attributed to the development of new haplotypes. Our results suggest that the mutation in the AVR-Pi9 gene is an alarming situation in the Yunnan province and thus needs attention.

The growth and productivity of wheat crops depend on the availability of essential nutrients such as zinc (Zn) and potassium (K2O), which play critical roles in the plant’s physiological and biochemical processes. This study aimed to investigate the synergizing effect of zinc and potassium fertilizers on uptake of both the nutrients, growth, yield, and quality of the Hashim-08 cultivar and local landrace, during the 2019–2020 growing season in Dera Ismail Khan, Pakistan. The experiment was designed using a split plot pattern in a randomized complete pattern, with main plots for the wheat cultivars and subplots for the fertilizer treatments. Results indicated that both cultivars responded positively to the fertilizer treatments, with the local landrace exhibiting maximum plant height and biological yield, and improved Hashim-08, showing increased agronomic parameters, including the number of tillers and grains and spike length. Application of Zn and K2O fertilizers significantly enhanced agronomic parameters, such as the number of grains per plant, spike length, thousand-grain weight, grain yield, harvest index, Zn uptake of grain, dry gluten content, and grain moisture content, while crude protein and grain potassium remained relatively unchanged. The soil’s Zn and K content dynamics were found to vary among treatments. In conclusion, the combined application of Zn and K2O fertilizers proved beneficial in improving the growth, yield, and quality of wheat crops, with the local landrace exhibiting lower grain yield but greater Zn uptake through fertilizer application. The study’s findings highlight that the local landrace showed good response to the growth and qualitative parameter when compared with the Hashim-08 cultivar. Additionally, the combined application of Zn and K showed a positive relation in terms of nutrient uptake and soil Zn and K content.

Crop genetic diversity is the most important factor for a long-term sustainable production system. Breeding and production strategies for developing and growing uniform and homogenous varieties have created many problems. Such populations are static and very sensitive to unpredictable stresses. In Nepal, more than 80% of the seed system is informal, which has contributed greatly to creating and maintaining genetic diversity within the field. This paper aims to assess and present the approaches and advantages of increased crop genetic diversity in the fields, based on the experiences of implementing on-farm conservation activities carried out in Nepal for last two decades. Some of the evidence has been derived from an ongoing evolutionary plant breeding (EPB) project being implemented in Nepal. The information is supplemented with field assessments, focus group discussion, and a literature review. The major approaches to increase crop genetic diversity are evolutionary plant breeding, cultivar mixture, landrace enhancement, informal seed systems, the bulk method, diversifying the seed sources, participatory plant breeding, open pollination, etc. EPB and cultivar mixture are very simple and effective approaches to increase crop genetic diversity at field level. The involvement of farmers in these approaches helps to accelerate the population improvement, maintaining the higher degree of genetic diversity. The major advantages of increased crop genetic diversity are seed maintenance by farmers themselves, minimal risk of crop failure, resilience to unpredictable stresses, increased amount of diversified nutrition, production increment, ease of producing organically, etc. However, there are some issues and problems associated with mixtures and intra-varietal diversity; for example, not being able to harvest by machine, maturing at a different date, difficulty in maintaining seeds and registration, etc. Crop genetic diversity should be considered as a sustainable approach for a climate-resilient and self-dependent production system. The higher the genetic diversity in farming land, the more chance of receiving multiple benefits in the agriculture system.

Besides organic growing, ancient wheats and landraces are attracting the attention of scientists who are reassessing the healthy and dietary properties attributed to them by popular tradition. A total of eleven wheat flours and whole meal samples were analyzed, of which, nine originated from the organic farming of five Greek landraces (one einkorn, one emmer, two durum, and one soft wheat) and a commercial organically grown emmer cultivar. Two commercial conventional flours of 70% and 100% extraction rate were examined for comparison purposes. Chemical composition, micronutrients, phenolic profile, and quantification, and antioxidant activity of all samples were determined. Moreover, dough rheology and breadmaking quality were studied; Flours from local landraces were higher in micronutrients, phenolic content, and antioxidant activity than the commercial samples. The 90% extraction flour of the landrace, besides the highest protein content (16.62%), exhibited the highest content of phenolic acids (19.14 μg/g of flour), whereas the commercial refined emmer flour was the lowest (5.92 μg/g of flour). The same milling of the einkorn landrace also showed a higher specific volume (1.9 mL/g vs. 1.7 mL/g) and lower bread crumb firmness than the whole meal commercial emmer sample (33.0 N vs. 44.9 N). The results of this study showed that the examined Greek wheat landraces could be considered as a possible source of microelements, phenolics, and antioxidants with a beneficial effect in human health, and by using an appropriate breadmaking procedure, they could produce high-quality breads.

The diagnostic survey of seedborne fungal pathogens is fundamental for symptomless material stored in gene banks to avoid the diffusion of pathogens by germplasm distribution and propagation. In this work, seeds of Southern Italian landraces of the common bean (Phaseolus vulgaris L.) belonging to the gene bank at CREA (Italy) were inspected to assess their phytosanitary status. The phytopathological analysis revealed the presence of the most common pathogens associated with common bean seeds such as Fusarium spp., Macrophomina phaseolina, Rhizoctonia solani, Colletotrichum lindemuthianum and Diaporthe/Phomopsis complex. However, new fungi able to completely inhibit seed germination were also observed. The most aggressive were isolated, and the morpho-pathological characterization, DNA sequencing and phylogenetic analysis allowed us to define the strains as Botryosphaeria dothidea CREA OF 360.4 and Diplodia mutila CREA OF 420.36. These two plant pathogens are generally associated with grapevines and other fruit trees. Pathogenicity tests were carried out along with a transmissibility test in which the transmission of the pathogens to the seedlings was proven. Host range experiments revealed the ability of these pathogens to infect crops such as pepper and melon. To our knowledge, this is the first time that B. dothidea and D. mutila were detected on the common bean.

Breeding for less digestible starch in wheat can improve the health impact of bread and other wheat foods. The application of forward genetic approaches has lately opened opportunities for the discovery of new genes that influence the digestibility of starch, without the burden of detrimental effects on yield or on pasta and bread-making quality. In this study we developed a high-throughput in vitro starch digestibility assay (HTA) for use in forward genetic approaches to screen wheat germplasm. The HTA was validated using standard maize and wheat starches. Using the HTA we measured starch digestibility in hydrothermally processed flour samples and found wide variation among 118 wheat landraces from the A. E. Watkins collection and among eight elite UK varieties (23.5 to 39.9% and 31.2 to 43.5% starch digested after 90 min, respectively). We further investigated starch digestibility in fractions of sieved wholemeal flour and purified starch in a subset of the Watkins lines and elite varieties and found that the matrix properties of flour rather than the intrinsic properties of starch granules conferred lower starch digestibility.

Common valerian (Valeriana officinalis L.) is an important medicinal plant revealing sedative, hypotensive, anti-spasmodic and anxiolytic activity. The purpose of the study was to determine the intraspecific variability of the common valerian growing wild in Poland and the ‘Lubelski’ landrace, as to their developmental traits, chemical composition and selected genetic parameters. Both wild-growing populations (19) and the landrace (1) were evaluated under ex situ conditions. Observations of the underground organs parameters, both developmental and chemical (according to the European Pharmacopoeia) were carried out in the first year of the plant’s development, while the characteristics of the aboveground organs, followed by the sowing value of seeds (according to the International Seed Testing Association)—in the second year. The genetic analyses were performed using the NGS-DArT-seq method. Results indicate the presence of five different gene pools covering the regions of population’s origin, with a gene flow within and between them. A high level of developmental and chemical variabilities among the wild-growing populations was noticed, however without a clear relation to the region of the origin. The mass of underground organs ranged from 107.4 to 403.6 g FW × plant−1 with the content of sesquiterpenic acids at the level of 0.004–0.094%. Population no 18 was distinguished by the highest content of sesquiterpenic acids and the relatively high mass of underground organs, followed by the admixture of the gene pool, typical for the ‘Lubelski’ landrace. Unlike the ‘Lubelski’ landrace, the wild-growing populations were characterized by a high amount of an essential oils (3.90 to 10.04 mL/kg), which may be promising from the perspective of their potential use. In turn, the sowing value of the seeds obtained from the populations, expressed as the germinability, was rather low (25.25–62.25%).

Chili peppers ( Capsicum annuum L.) are economically valuable crops belonging to the Solanaceae family and are popular worldwide because of their unique spiciness and flavor. In this study, differences in the metabolomes of landrace (Subicho) and disease-resistant pepper cultivars (Bulkala and Kaltanbaksa) widely grown in Korea are investigated using a 1 H NMR-based metabolomics approach. Specific metabolites were abundant in the pericarp (GABA, fructose, and glutamine) and placenta (glucose, asparagine, arginine, and capsaicin), highlighting the distinct physiological and functional roles of these components. Both the pericarp and placenta of disease-resistant pepper cultivars contained higher levels of sucrose and hexoses and lower levels of alanine, proline, and threonine than the traditional landrace cultivar. These metabolic differences are linked to enhanced stress tolerance and the activation of defense pathways, imbuing these cultivars with improved resistance characteristics. The present study provides fundamental insights into the metabolic basis of disease resistance in chili peppers, emphasizing the importance of multi-resistant varieties to ensure sustainable agriculture and food security. These resistant varieties ensure a stable supply of high-quality peppers, contributing to safer and more sustainable food production systems.

Sorghum landraces are essential for developing cultivars with improved properties, such as disease tolerance, yield and metabolite content. In this study, 139 genotypes (136 Korean sorghum landraces and 3 control cultivars) collected from various provinces were investigated using eleven agronomical and five biochemical traits. The landraces showed little variation in their qualitative agronomical traits. In contrast, quantitative agronomical and biochemical traits differed significantly among the landraces. It was discovered that 16 landraces matured ahead of all control cultivars. Furthermore, 26 landraces had significantly higher thousand seed weights (TSWs) than two of the control cultivars, including Nampungchal (30.63 g) and Sodamchal (30.53 g), whereas only 1 landrace had a significantly higher TSW than the other control cultivar, Wheatland (37.93 g) (p < 0.05). The levels of total tannin content (TTC), total phenolic content (TPC), 2,2′-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) diammonium (ABTS) radical cation scavenging activity, 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical scavenging activity and ferric reducing antioxidant power (FRAP) were in the ranges of 0.12–428.95 mg CE/g, 1.17–10.23 mg GAE/g, 1.64–67.60 mg TE/g, 0.48–31.99 mg AAE/g and 0.63–21.56 mg AAE/g, respectively, and were all affected by collection area, seed weight and seed color. Landraces from northern provinces were discovered to have higher metabolite contents. Furthermore, large seeds had higher TTC and TPC levels as well as DPPH, ABTS and FRAP activities than medium and small seeds, except for the TTC and FRAP, which were significantly different. In terms of seed color, white seeds had significantly lower metabolite contents and antioxidant activities and were notable in principal component analysis. Correlation analysis revealed positive and significant associations between biochemical traits, as well as between panicle-related agronomic traits. In general, the landraces with superior characteristics could be ideal candidates for sorghum breeding programs.

Rye is used in some applications in the food and beverage industry and for the preparation of functional foods. It is an interesting raw material in malting and brewing due to its characteristic contribution to the beer’s color, turbidity, foam and aroma. The aim of this work was to optimize the micro-malting process of a rye landrace. The response surface methodology (RSM) was applied to study the influence of three malting parameters (germination time, germination temperature and degree of steeping) on the quality traits of malted rye. Long germination times at high temperatures resulted in an increase in the extract and Kolbach index. The model for the apparent attenuation limit showed a particular pattern, whereby time and temperature inversely influenced the response. The lowest viscosities were determined in the worts produced from highly modified malts. Optimization of the variables under study was achieved by means of a desirability function and a genetic algorithm. The two methodologies provided similar results. The best combination of parameters to optimize the malting process on the rye landrace under study was achieved at 6 days, 12 °C and 44 g/100 g.

Non-trellised culture of tomato is gaining interest among farmers cultivating long shelf-life (LSL) landraces because of the reduction in production costs. This cropping system can benefit from the selection of determinate growth genotypes, mirroring the advancements achieved in processing tomatoes. With this aim, and profiting from the natural variation found within the Penjar landrace, we selected traditional determinate genotypes and breed novel lines carrying both the self-pruning (sp) and the compound inflorescence (s) mutations. Traditional genotypes and breeding lines were compared to commercial controls in a three multi-locality trial and under two irrigation regimes (normal watered, 100% ETc; and water deficit, 50% ETc). Water use efficiency, harvest index, yield and fruit quality traits were studied at harvest. During postharvest, the effects of genotype and management practices on shelf life were assessed under different storage conditions (controlled conditions/cold storage/farmer facilities). All genotypes used water more efficiently under water deficit irrigation than under normal irrigation. Harvest index was improved in the determinate genotypes and was neither affected by locality nor by irrigation factors. Breeding lines showed yields similar to the controls and the traditional ones; however, they displayed a plant architecture that facilitated their management. They also presented higher postharvest shelf life than controls and traditional lines. Shelf life was significantly affected by genotype (G), locality (L, at early stages), and irrigation regime (I, at later stages), with the contribution of the genotype to the phenotypic variance increasing along the postharvest. Low watering increased shelf life in some genotypes while cold storage and high humidity conditions impeded the long shelf-life trait. Overall, sunscald incidence and percentage of unripe fruits when using a single harvest strategy are the major limitations for non-trellised culture of Penjar tomato. In conclusion, this study sheds light on the main aspects of management and on breeding targets to promote a non-trellised culture of Penjar tomato in combination with optimal water use efficiency.

Different studies have reported a narrow genetic base for garden asparagus (Asparagus officinalis L.) due to its common origin, a diploid population (‘Purple Dutch’). The present study focused on the development of new diploid plant material that may be useful to widen the genetic base of the crop by using a tetraploid landrace ‘Morado de Huétor’ (A. officinalis × A. maritimus). With this purpose, a diploid pre-breeding population (n = 1000) carrying introgressions of ‘Morado de Huétor’ has been obtained. This new population derived from crosses under open pollination of a parental collection (n = 77) that was developed in a previous study. The parental collection derived from the first backcrossing using different diploid cultivated plants as a recurrent parent and ‘Morado de Huétor’ as a donor. The genetic diversity of the pre-breeding population was assessed using a set of EST-SSR markers (AG7, AG8, TC1, TC3, TC7, TC9) in a collection of plants (n = 57), which was randomly sampled in the pre-breeding population. The results were compared to previous data obtained from the parental collection, a set of current diploid asparagus cultivars and the landrace ‘Morado de Huétor’. The average of PICm (Polymorphic Information Content) values obtained in the pre-breeding population (0.75) resulted higher than the value obtained in the diploid cultivars (0.63) but lower than in ‘Morado de Huétor’ (0.83). Twenty-two alleles (52.4%) detected in the new diploid population were specific from ‘Morado de Huétor’. Principal Coordinate Analyses (PCoA) revealed that the new population had a genetic diversity distribution different from the current cultivars. This new population was also evaluated for different morpho-agronomic traits (earliness, stalk number, branching height and stalk thickness) for two years. Significant differences among plants (p < 0.001) were found for these five traits and, therefore, a genotype variation is suggested. As a result, 71 plants were selected to develop a breeding base population. The genetic variability of those selected plants was also analyzed and similar genetic variability to the pre-breeding population was obtained. The results obtained in this study show that this new population could be used to enlarge the genetic base of the current diploid asparagus cultivars.

Genetic structure and distinctive features of landraces, such as adaptability to local agro-ecosystems and specific qualitative profiles, can be substantially altered by the massive introduction of allochthonous germplasm. The landrace known as “Cipolla rossa di Acquaviva” (Acquaviva red onion, further referred to as ARO) is traditionally cultivated and propagated in a small area of the Apulia region (southern Italy). However, the recent rise of its market value and cultivation area is possibly causing genetic contamination with foreign propagating material. In this work, genotyping-by-sequencing (GBS) was used to characterize genetic variation of seven onion populations commercialized as ARO, as well as one population of the landrace “Montoro” (M), which is phenotypically similar, but originates from another cultivation area and displays different qualitative features. A panel of 5011 SNP markers was used to perform parametric and non-parametric genetic structure analyses, which supported the hypothesis of genetic contamination of germplasm commercialized as ARO with a gene pool including the M landrace. Four ARO populations formed a core genetic group, homogeneous and clearly distinct from the other ARO and M populations. Conversely, the remaining three ARO populations did not display significant differences with the M population. A set of private alleles for the ARO core genetic group was identified, indicating the possibility to trace the ARO landrace by means of a SNP-based molecular barcode. Overall, the results of this study provide a framework for further breeding activities and the traceability of the ARO landrace.

The sweet pepper (Capsicum annuum) ‘Peperone Cornetto di Pontecorvo’ is a prominent local variety at risk of genetic erosion cultivated in the Latium region (Italy). This horn-shaped landrace is recognized for its high digestibility due to the thinness of the skin and has been granted the Protected Designation of Origin (PDO) mark since 2010. Nowadays, different accessions are claimed as ‘Peperone Cornetto di Pontecorvo’ and no assay has been conducted to determine authenticity. In this study, 14 ‘Peperone Cornetto di Pontecorvo’ accessions and 7 similar horn-type peppers were investigated for their morpho-agronomic performance and chemical composition. Digital fruit imaging was implemented as a tool to pinpoint with high accuracy the morphometric parameters of berries. In total, 52 traits were scored. The multivariate analysis revealed different clusters that separated ‘Peperone Cornetto di Pontecorvo’ from similar types. The weight and size of fruits, as well as the content of soluble solids, were the most discriminating factors among the cultivars studied. Genomic fingerprinting was performed using ddRAD sequencing, yielding a total of a total of 120 million raw sequences and 2196 high-quality SNPs. Both Bayesian and hierarchical clustering analyses confirmed the existence of two different (K = 2) sub-populations separating ‘Peperone Cornetto di Pontecorvo’ accessions from similar types, thus highlighting a high membership (qi > 0.97) coefficient for accessions cultivated in the Pontecorvo area (Frosinone district). In addition, a direct relationship was found between the genetic diversity of cultivars and their geographical provenance, providing hints on the breeding history of local varieties in diverse rural areas. Genomic markers are revealed as a valuable tool to establish the uniqueness and distinctness of this local variety. This information will be very helpful for recovery, enhancement, and protection from possible imitations.

Rice (Oryza sativa L.) is one of the most globally important crops, nutritionally and economically. Therefore, analyzing the genetic basis of its nutritional quality is a paramount prerequisite for cultivating new varieties with increased nutritional health. To systematically compare the nutritional quality differences between landraces and cultivated rice, and to mine key genes that determine the specific nutritional traits of landraces, a seed metabolome database of 985 nutritional metabolites covering amino acids, flavonoids, anthocyanins, and vitamins by a widely targeted metabolomic approach with 114 rice varieties (35 landraces and 79 cultivars) was established. To further reveal the molecular mechanism of the metabolic differences in landrace and cultivated rice seeds, four cultivars and six landrace seeds were selected for transcriptome and metabolome analysis during germination, respectively. The integrated analysis compared the metabolic profiles and transcriptomes of different types of rice, identifying 358 differentially accumulated metabolites (DAMs) and 1982 differentially expressed genes (DEGs), establishing a metabolite–gene correlation network. A PCA revealed anthocyanins, flavonoids, and lipids as the central differential nutritional metabolites between landraces and cultivated rice. The metabolite–gene correlation network was used to screen out 20 candidate genes postulated to be involved in the structural modification of anthocyanins. Five glycosyltransferases were verified to catalyze the glycosylation of anthocyanins by in vitro enzyme activity experiments. At the same time, the different mechanisms of the anthocyanin synthesis pathway and structural diversity in landrace and cultivated rice were systematically analyzed, providing new insights for the improvement and utilization of the nutritional quality of rice landrace varieties.

Salt stress negatively impacts crop production worldwide. Genetic diversity among barley (Hordeum vulgare) landraces adapted to adverse conditions should provide a valuable reservoir of tolerance genes for breeding programs. To identify molecular and biochemical differences between barley genotypes, transcriptomic and antioxidant enzyme profiles along with several morpho-physiological features were compared between salt-tolerant (Boulifa) and salt-sensitive (Testour) genotypes subjected to salt stress. Decreases in biomass, photosynthetic parameters, and relative water content were low in Boulifa compared to Testour. Boulifa had better antioxidant protection against salt stress than Testour, with greater antioxidant enzymes activities including catalase, superoxide dismutase, and guaiacol peroxidase. Transcriptome assembly for both genotypes revealed greater accumulation of differentially expressed transcripts in Testour compared to Boulifa, emphasizing the elevated transcriptional response in Testour following salt exposure. Various salt-responsive genes, including the antioxidant catalase 3, the osmoprotectant betaine aldehyde dehydrogenase 2, and the transcription factors MYB20 and MYB41, were induced only in Boulifa. By contrast, several genes associated with photosystems I and II, and light receptor chlorophylls A and B, were more repressed in Testour. Co-expression network analysis identified specific gene modules correlating with differences in genotypes and morpho-physiological traits. Overall, salinity-induced differential transcript accumulation underlies the differential morpho-physiological response in both genotypes and could be important for breeding salt tolerance in barley.

Different Solina wheat accessions (n = 24) collected in the Abruzzo region (Italy) were studied using 45,000 SNP markers generated from the DarTseq platform. The structure of genetic data was analyzed by Principal Component Analysis and Hierarchical Cluster analysis that revealed the existence of two main clusters (Clu1 and Clu2) characterized by samples with different geographical origin. The Solina genetic dataset was further merged and analyzed with a public genetic one provided by CIMMYT containing 25,963 genotypes from all over the world. The Solina accessions occupied a vast space, thus confirming a high heterogeneity of this landrace that, nevertheless, is considerably unique and placed quite far from other clusters. Clu1 and Clu2 divergence were clearly visible. Solina clusters were genetically closer to landraces from Turkey and the central fertile crescent than to the Italian genotypes present in the dataset. Selected commercial quality traits of accessions of the two Solina clusters were analyzed (yield, thousand kernel weight, test weight, and protein content), and significant differences were found between clusters. The results of this investigation did not highlight any relationships of Solina with Italian genotypes, and confirmed its wide genetic diversity by permitting to identify two genetic groups with distinct origin and quality traits.

Traditional vegetable varieties constitute an important reservoir of biodiversity, so recovering, cultivating, and correctly classifying these landraces is part of key global heritage for the future of food security. In this study, 17 traditional pepper varieties from the Valencian Community (Spain) were characterized using 14 quantitative and 30 qualitative conventional morphological descriptors, including plant, flower, and fruit traits, in two ripening stages: green and red. As a result, landraces were grouped based mainly on their fruit morphology (G1: thin and elongated; G2: thick and robust; P-49: ball pepper). During a second trial, the preservation of the described characteristics was checked, and the number of fruit produced per plant was determined. From the acquired information, the most desirable traits that could be of interest for cultivation and harvesting practices were established, including erect growth habit, dense branching, big leaves, and uniformity and low persistence of fruit. Additionally, based mainly on fruit size and fruit wall thickness traits, the varieties with the highest potential to be marketed as fresh, P-37 (from G2), P-41, and P-72 (from G1), were determined. The ungrouped P-49 variety is an optimal candidate for industry processes because of its small size and robust fruit wall. The importance of phenotyping studies for preserving plant varieties is emphasized.

Salt stress is considered as one of the most common abiotic stresses reducing the productivity and fruit quality of crop plants. The present study was carried out to assess the salt tolerance among 15 local squash (Cucurbita maxima Duchesne) landraces. Different salt (NaCl) concentrations of 0, 100, 200 and 300 mM were selected in order to evaluate the response of the study germplasm to salt stress based on 12 agronomic parameters and 3 biochemical traits, proline, malondialdehyde (MDA) and chlorophylls. A varied effect of the salt stress level was observed among the studied landraces based on germination potential, as well as on growth and biochemical parameters at seedling stage. Results showed that all landraces were drastically affected at high stress level with a significant variation in their stress response, indicating the existence of considerable genetic variability. Landraces “746” and “747” were the best performing cultivars across stress levels, whereas “1007”, “1008” and “1009” were the most negatively affected. Based on the tested landrace performance, four landraceswere selected and further evaluated at biochemical level, focusing on the determination of compounds that play a key role in the ability to withstand salt stress. The mean MDA content across landraces was generally increased in stressed plants, as compared to the control treatment; the increase was attributed to a peak in MDA content at specific stress levels. In particular, “746” and “1007” showed the maximum content at 100 mM NaCl, while in landrace “751”, MDA content reached its peak at 300 mM NaCl. In addition, the response of most landraces to salt stress involved an increase in free proline content, with the exception of “746”, with the maximum content being observed either at 200 mM (“748” and “751” landraces) or at 300 mM NaCl, where only “747” expressed the highest content. These findings can be extrapolated into efforts to develop more salt-tolerant squash landraces and exhaust the possibilities of using saline water or soils under changing climate conditions.

A growing interest in the recovery and enhancement of crops, particularly local varieties such as 'Caaveiro' wheat, has been observed. This study aims to investigate the impact of cultivation systems (organic versus conventional) on the nutritional quality of 'Caaveiro' flour and breads protected by the PGI "Pan Galego," employing two fermentation methods (sourdough versus sourdough and biological yeast). Organic flour exhibited significantly higher levels of moisture, fat, sucrose, phosphorus (P), sodium (Na), and copper (Cu) while also exhibiting a lower total starch and zinc (Zn) content. Organic bread, produced using both fermentation methods, demonstrated significantly higher protein, carbohydrate, total, resistant, and rapidly digestible starch, ash, Na, P, iron (Fe), and Cu content. Additionally, they contained less moisture compared to conventional bread. Despite variations in nutritional characteristics based on the cultivation system, the organic approach proved effective at producing high-quality products with a positive environmental impact, which is highly appreciated by consumers.

Nowadays the cultivation and consumption of traditional lettuce varieties are growing as they are particularly appealing to consumers for their diversity, and high nutraceutical quality. However, lettuce is a highly perishable product, which results in significant nutritional loss from harvest to final consumers. In this work, the content of some bioactive compounds (chlorophylls, carotenoids, anthocyanins, ascorbic acid, phenols), overall antioxidant capacity and mineral content was monitored in five landraces and four commercial lettuce varieties to compare their variation during the storage period. Visual characterization was conducted during the postharvest period, as was the determination of the parameters indicative of oxidative stress, to establish the preservation capacity of their physico-chemical attributes. As a general trend, lettuce varieties showed individualized behavior during the postharvest period, which was not necessarily better in the commercial varieties compared to the landraces. Of all the varieties, landrace L10 stood out for not showing excessive variations in its general appearance or nutritional quality throughout its life cycle. However, in terms of initial concentration of bioactive compounds, the reddest varieties (CL4 and L11) stand out. These results indicate variability among varieties, which emphasizes the potential of lettuce landraces in postharvest practices.

Cowpea (Vigna unguiculata) is a robust legume; nevertheless, yield is always affected by drought, especially when it occurs during reproductive growth and seed filling. Considered a key crop in the effort to attain food security, and a suitable crop for a scenario of climate change, modern disregard for cowpea landraces is particularly detrimental as it causes genetic variability loss, compromising breeding efforts. To contribute to the evaluation of the cowpea germplasm, four Portuguese landraces (L1, L2, L3, L4) were compared with a commercial variety (CV) to evaluate their physiological responses to terminal drought and their inter-variation on productivity, under semi-controlled conditions. Despite no differences in relative water content (RWC) between the CV and the landraces under water deficit (WD), differences in leaf water potential (Ψ) defined the CV as having an isohydric control of stomata in contrast with anisohydric control for landraces. There was an identical decrease in the photosynthetic rate for all plants under stress, caused by both stomatal and non-stomatal limitations, namely, damages at the level of photosystem II as indicated by fluorescence measurements. Instantaneous water use efficiency (iWUE) was improved with stress in L1 and L3. Maintenance of higher relative chlorophyll content for longer periods in the CV revealed a stay-green phenotype. The slim differences observed in terms of stomatal control, iWUE and progression of senescence between the CV and the landraces under WD led to quite important differences in terms of productivity, as inferred from improved yield (number of pods and number of grains per plant). This is a clear result of pragmatic on-farm selection. On one hand it shows that small differences in stomatal responses or water saving strategies under WD may lead to desirable outcomes and should therefore be considered during breeding. On the other hand, it suggests that other traits could be explored in view of drought adaptation. These results highlight the need to preserve and characterize as many genetic pools as possible within a species.

Cereal landraces are a very valuable resource in contemporary agriculture. A renewed focus for breeding purposes could ameliorate some negative consequences of modern agriculture and conventional breeding, such as the loss of genetic diversity. One strategy combining molecular genotyping and characterization of morpho-agronomic traits related to productivity is proposed to assess a group of tetraploid wheat landraces named Bufala, historically cultivated in the mountain areas of Sicily and characterized by adaptability in terms of cold tolerance, ability to grow in marginal soils, weed competitiveness and resistance to diseases. A total of 55 SSR molecular markers were used to detect patterns of diversity in 30 rivet and durum wheat genotypes. Furthermore, phenotyping was then conducted for 8 morpho-agronomic traits. Discriminant analysis of principal components (DAPC), STRUCTURE and phylogenetical analysis allowed to identify three groups, two of them genetically close and including both Bufala and Bufala-related rivet landraces. To the third group, old and more recent durum wheat varieties, constituting the outgroup, were assigned. Clustering was confirmed by Principal Component Analysis (PCA). Finally, a correlation analysis showed that Bufala genotypes are characterized by lower ear density, major ear length and later earing time compared with the other studied genotypes. The levels of diversity and population structure could be an important contribution to parent selection in tetraploid wheat breeding programs, as well as to germplasm conservation and management.

Cannabis (Cannabis sativa L.) has a rich history of human use, and the therapeutic importance of compounds produced by this species is recognized by the medical community. The active constituents of cannabis, collectively called cannabinoids, encompass hundreds of distinct molecules, the most well-characterized of which are tetrahydrocannabinol (THC) and cannabidiol (CBD), which have been used for centuries as recreational drugs and medicinal agents. As a first step to establish a cannabis breeding program, we initiated this study to describe the HPLC-measured quantity of THC and CBD biochemistry profiles of 161 feral pistillate cannabis plants from 20 geographical regions of Iran. Our data showed that Iran can be considered a new region of high potential for distribution of cannabis landraces with diverse THC and CBD content, predominantly falling into three groups, as Type I = THC-predominant, Type II = approximately equal proportions of THC and CBD (both CBD and THC in a ratio close to the unity), and Type III = CBD-predominant. Correlation analysis among two target cannabinoids and environmental and geographical variables indicated that both THC and CBD contents were strongly influenced by several environmental–geographical factors, such that THC and CBD contents were positively correlated with mean, min and max annual temperature and negatively correlated with latitude, elevation, and humidity. Additionally, a negative correlation was observed between THC and CBD concentrations, suggesting that further studies to unravel these genotype × environment interactions (G × E interactions) are warranted. The results of this study provide important pre-breeding information on a collection of cannabis that will underpin future breeding programs.

Interest in the cultivation of lettuce landraces is increasing because native varieties, as high-quality products, are particularly attractive to consumers. Lettuce is a popular leafy vegetable worldwide, and interest in the consumption of first leaves (microgreens) and seedlings (baby leaves) has grown due to the general belief that young plants offer higher nutritional value. The content of some bioactive compounds and antioxidants (chlorophylls, carotenoids, anthocyanins, ascorbic acid, phenols, antioxidant activity) was monitored in six lettuce landraces and five commercial varieties, and compared across three development stages: microgreen, baby, and adult. Ascorbic acid and phenolic contents were 42% and 79% higher, respectively, in the early stages than in adult lettuces, and red-leaf varieties (CL4 and L11) stood out. This finding agrees with lettuce’s marked antioxidant capacity and correlates with its pigment contents, especially anthocyanins. The nutritional value of adult lettuce is conditioned by its size, shape, and head structure as phytochemical concentrations are regulated by light. The low content of ascorbic acid, phenolics, and anthocyanins in crisphead lettuce (CL5) is a clear example (49, 67%, and 27% lower, respectively, than the adult mean). Our results indicate the wide variability of lettuces’ nutritional characteristics and emphasize that traditional varieties are a helpful source of agricultural biodiversity.

The study describes the alterations in metabolomic profiles of four tomato fruit mutations introgressed into Solanum lycopersicum cv. San Marzano, a well-known Italian traditional variety. Three lines carrying variants affecting the content of all pigments, high pigment-1 (hp-1), hp-2, pigment diluter (pd), and a combination of Anthocyanin fruit and atroviolaceum (Aft_atv), were selected, and characterized. Biochemical analysis of 44 non-polar, 133 polar, and 65 volatile metabolites in ripe fruits revealed a wide range of differences between the variant lines and the recurrent parent San Marzano. Among non-polar compounds, many carotenoids, plastoquinones, and tocopherols increased in the fruit of high pigment lines, as well as in Aft_atv, whose β-carotene levels increased too. Interestingly, pd displayed enriched levels of xanthophylls (all-trans-neoxanthin and luteoxanthin) but, simultaneously, decreased levels of α-and β-/γ-tocopherols. Looking at the metabolites in the polar fraction, a significant decrease in sugar profile was observed in hp-1, pd, and Aft_atv. Conversely, many vitamins and organic acids increased in the hp-2 and Aft_atv lines, respectively. Overall, phenylpropanoids was the metabolic group with the highest extent of polar changes, with considerable increases of many compounds mainly in the case of Aft_atv, followed by the pd and hp-2 lines. Finally, several flavor-related compounds were found to be modified in all mutants, mostly due to increased levels in many benzenoid, lipid, and phenylalanine derivative volatiles, which are associated with sweeter taste and better aroma. Construction of metabolic maps, interaction networks, and correlation matrices gave an integrated representation of the large effect of single variants on the tomato fruit metabolome. In conclusion, the identified differences in the mutated lines might contribute to generating novel phenotypes in the traditional San Marzano type, with increased desirable nutraceutical and organoleptic properties.

Tan spot (TS), caused by Pyrenophora tritici-repentis (Ptr), has gained significant importance in Tunisia. In this study, a Mediterranean durum wheat collection of 113 accessions were evaluated under field conditions, during the 2018–2019 cropping season, for resistance to Ptr at Koudia experimental station in Bou Salem (Tunisia). The disease progress curve (AUDPC) was used to screen this collection, and the effect of days to heading (DH) and plant height (PH) were evaluated in relation to TS resistance. No significant correlation of PH with AUDPC was found, yet a significant correlation (r = 0.212, p ≤ 0.05) was established between DH and AUDPC scores, suggesting that DH may have an effect on TS development. Moreover, correlation between seedling and adult reactions was significant (r = 0.695, p ≤ 0.001). Although susceptible accessions clustered separately from resistant accessions, the clustering was independent of the country of origin and the status of improvement of the wheat accessions. In total, 67% and 80% of resistant and moderately resistant accessions, respectively, were landraces, suggesting therefore the possible presence of novel sources of resistance to Ptr in some landraces, which can be used to establish a breeding program for resistance to tan spot disease.

Leaf pubescence is an important trait closely associated with plant adaptability to specialized habitats. Baimaomai (BMM) is a wheat (Triticum aestivum L.) landrace originating from the high-altitude, drought-prone environment of Sichuan Province, China with long, dense leaf pubescence. A population of 234 recombinant inbred lines (F10) developed from the cross between Chuanmai104 (CM104), which lacks leaf pubescence, and BMM with pubescent leaves, was used to conduct a phenotypic evaluation of leaf pubescence. Three quantitative trait loci (QTLs) were detected on chromosome arms 7BS, 3DL and 3AL using a high-density wheat 50K single-nucleotide polymorphism array in four environments. The QTLs were designated QLp.saas-7BS, QLp.saas-3DL and QLp.saas-3AL. QLp.saas-3AL, derived from BMM, and QLp.saas-3DL, derived from CM104, were new minor-effect loci. QLp.saas-7BS, derived from BMM, was a novel major-effect locus detected in all environments and was localized in a 0.48 Mb interval on chromosome arm 7BS based on the wheat ‘Chinese Spring’ reference genome. QLp.saas-7BS explained up to 40.77% of the total phenotypic variance. KASP markers tightly linked to QLp.saas-7BS were developed and verified. The present results provide valuable information for further fine mapping, cloning, and marker-assisted selection with QLp.saas-7BS in wheat.

The diversity preserved within the European long shelf life tomato landraces (LSL) is a unique source to design high quality tomato products better adapted to changing environmental conditions and, thereby, to reduce food losses. The adaptation of LSL to water deficit (WD) management practices and their postharvest keeping ability can be used as tools to concomitantly enhance fruit quality and sustainable production. In this study, we investigated the effect of WD conditions and the plant growing environment (open field vs. tunnel) on quality traits of two genotypes of the Penjar LSL variety (modern hybrid (MV) and landrace (LR)). Changes in ripening-related quality traits (fruit ethylene production, respiration rate, firmness, color, soluble solids content, titratable acidity and the content of antioxidants, as well as specific sugars and acids) in response to the different preharvest factors were evaluated at the time of harvest and after a short period of storage (30 days), following actual commercial practices. Significant differences among genotypes were encountered for most quality traits at the time of harvest and higher intra- and inter-environment heterogeneity was observed in the LR than in the MV genotype. In general, Penjar tomatoes exhibit a low physiological activity (ethylene production, 0.56–1.33 µL kg−1 h−1, respiration rate: 0.015–0.026 mg CO2 kg−1 h−1) at harvest. In both genotypes, WD increased to a different extent the fruit external color (redness, lightness) as well as the sensory (SSC) and nutritional (antioxidant capacity) fruit profiles. By contrast, the growing environment had little impact on most fruit quality traits. Postharvest storage only led to a slight reduction in the fruit respiration and ethylene production, lower sugars and acids content, enhanced color and no firmness changes. Overall, the results from this study demonstrate that selecting the appropriate genotypes is the most important step towards the design of high-quality LSL tomatoes, while WD and short-term storage can be used by farmers as a strategy to differentiate the product quality in specific market niches.

Landraces are considered a key element of agrobiodiversity because of their high variability and adaptation to local environmental conditions, but at the same time, they represent a breeding potential hidden in gene banks that has not yet been fully appreciated and utilized. Here, we present a genome-wide DArTseq analysis of the diversity of 116 spring barley landraces preserved in the collection of the Polish gene bank. Genetic analysis revealed considerable variation in this collection and several distinct groups related to the landraces’ country of origin and the grain type were identified. The genetic distinctness of hulless accessions may provide a basis for pro-quality breeding aimed at functional food production. However, the variable level of accession heterogeneity can be a significant obstacle. A solution to this problem is the establishment of special collections composed of pure lines that are accessible to breeders. Regions lacking genetic diversity have also been identified on 1H and 4H chromosomes. A small region of reduced heterogeneity was also present in the hulless forms in the vicinity of the nud gene that determines the hulless grain type. However, the SNPs present in this area may also be important in selection for traits related to grain weight and size because their QTLs were found there. This may support breeding of hulless forms of spring barley which may have applications in the production of high-quality foods with health-promoting values.

Rye (Secale cereale L.) has been at the basis of agriculture for centuries in most mountainous and northern areas of Eurasia, because it is more resistant than other cereals to low temperatures and poor soils. Rye deserves to be re-evaluated as a source of “environmentally resilient” genes in the future as well, and particularly in a perspective to grow cereals able to withstand global warming. According to recent studies, modern rye varieties have a relatively narrow genetic pool, a condition that is worsening in the most recent breeding processes. The preservation of local landraces as unique sources of genetic diversity has therefore become important, in order to preserve the genetic heritage of rye. In this study, genetic diversity of rye landraces collected in a sector of the Italian Alps particularly suited to traditional agriculture was investigated using the ddRADseq technique. A few landraces still managed with family farming turned out to be genetically distant from the commercial varieties currently in use, highlighting that the phenomenon of homogenization of the local genetic pool can be still circumvented. Ex situ conservation of genetically divergent landraces is a valid tool to avoid the dissipation of an as yet unexplored genetic potential.

Our knowledge about the status of agrobiodiversity on farms is still very limited. While several studies to assess the crop genetic diversity on farms have been undertaken, there are no systematic documentation and monitoring practices for varietal diversity in space and time. Achievement of the agrobiodiversity Aichi Target 13, established under the Biodiversity Strategy Plan 2011–2020, have failed due to the lack of existing data on varietal diversity at country, regional and global levels. Here, we propose a method for calculating the Varietal Threat Index using the four-cell analysis (FCA) participatory methodology at different geographical scales to monitor changes in the varietal diversity on farms and to compare between areas. We tested the method with datasets collected from the UN-Environment GEF project implemented in India, in which data on crop and varietal diversity were collected across seven states in India, covering five agroecological regions. Results showed that landraces are still commonly grown in the study sites, especially in the central and western regions, and that more than 50% of landraces are considered threatened, suggesting that conservation interventions are required to prevent large-scale genetic erosion. A long-term monitoring framework for varietal diversity in India is proposed.

The soybean is an important feed, industrial raw material, and food crop in the world due to its rich components. There is a long history of soybean cultivation with different types and rich resources in the Zhejiang province of China. It is important to understand genetic diversity as well as phenotypic variation for soybean breeding. The objective of this study was to analyze both genetic and phenotypic characteristics of the 78 soybean landraces collected, and to explore a potential advantage of germplasm resources for further application. These 78 autumn-type soybean landraces have been propagated, identified, and evaluated in both 2021 and 2022. There were agronomic, quality, and genetic variations according to the comprehensive analyses. There was a good consistency between seed size and seed coat color. There were significant differences of seed protein, fat, and sugar contents based upon the seed coat color. These soybean landraces were genotyped using 42 simple sequence repeat markers and then clustered into two groups. The two groups had a consistency with the seed coat color. This study gave us a combined understanding of both the phenotypic variation and the genetic diversity of the soybean landraces. Therefore, the reasonable crossing between different soybean types is highly recommended.

Rice is a staple food for more than half of the world’s population. Modern rice varieties have been developed for high yield and quality; however, there has been a substantial loss of diversity. A greater number of genetically dynamic landraces could offer valuable and useful genetic resources for rice improvement. In this study, the genetic diversity and population structure of 365 accessions of lowland and upland landraces from four populations from different geographical regions of Thailand were investigated using 75 SNP markers. Clustering analyses using maximum likelihood, Principal Coordinate Analysis (PCoA), and Discriminant Analysis of Principal Components (DAPC) clustered these landraces into two main groups, corresponding to indica and japonica groups. The indica group was further clustered into two subgroups according to the DAPC and STRUCTURE analyses (K = 3). The analysis of molecular variance (AMOVA) analysis results revealed that 91% of the variation was distributed among individuals, suggesting a high degree of genetic differentiation among rice accessions within the populations. Pairwise FST showed the greatest genetic differentiation between the northeastern and southern populations and the smallest genetic differentiation between the northern and northeastern populations. Isolation-by-distance analysis based on a Mantel test indicated a significant relationship between the genetic distance and geographic distance among the Thai rice landraces. The results from this study provide insight into the genetic diversity of Thai rice germplasm, which will enhance the germplasm characterization, conservation, and utilization in rice genetics and breeding.

The Annurca type is an historical Italian apple fruit probably native to the Campania region. These fruits are harvested before a full maturity stage and go through an open-field reddening process. Products based on 1-methylcyclopropene (1-MCP) are widely used in postharvest to improve apple quality and avoid disorders in controlled atmosphere. In this work, we tested the impact of 1-MCP in the traditional reddening system of Annurca type by analyzing three postharvest strategies, namely, fruits exposed for ten days to the traditional reddening and then cold-stored (RDG treatment); fruits treated in postharvest with 1-MCP and then cold-stored (MCP treatment); fruits treated in postharvest with 1-MCP, exposed for ten days to the open-field reddening and then cold-stored (MCP + RDG treatment). Using a full factorial design, we measured main physical and compositional traits and described the properties of the products by consumer testing at two storage times. The MCP + RDG treatment provided the most valuable results, by positively affecting fruit flesh firmness and several sensorial attributes (e.g., hardness, crunchiness, juiciness, sweetness), including a reduction of the mealiness. At the end of the cold-storage, MCP + RDG apples scored a higher consumer’s overall liking. The work demonstrated that the 1-MCP technology can be integrated into a traditional open-field postharvest process to improve fruit quality and, potentially, to extend the shelf life of Annurca apples.

Sweet pepper is one of the most important economic fruits with nutritional attributes. In this sense, the nutraceutical value of consumed products is a major concern nowadays so the content of some bioactive compounds and antioxidants (phenols, ascorbic acid, lycopene, carotenoids, chlorophylls, and antioxidant activity) was monitored in 18 sweet pepper landraces at two maturity stages (green and red). All the traits except chlorophylls significantly increased in red fruits (between 1.5- and 2.3-fold for phenols, ascorbic acid, and 2-2-diphenyl-1-picrylhydrazyl (DPPH) inhibition activity, 4.8-fold for carotenoid and 27.4-fold for lycopene content), which suggests that ripening is key for obtaining desired fruit quality. Among landraces, P-44 in green fruits is highlighted for its content in carotenoids, chlorophylls, phenols, and ascorbic acid, and P-46 for its antioxidant capacity and lycopene content. Upon maturity, P-48, P-44, and P-41 presented higher levels of phenols and lycopene, and P-39 of phenols, carotenoid, and DPPH. This work reflects a wide variability in the 18 pepper landraces at bioactive compounds concentration and in relation to fruit ripeness. The importance of traditional landraces in terms of organoleptic properties is emphasized as they are the main source of agricultural biodiversity today and could be helpful for breeders to develop new functional pepper varieties.

The extensive genetic diversity of crop landraces deposited in gene banks is an important part of future breeding programs. However, in order to exploit this potential, it is necessary both to preserve germplasm and to collect and share a wide range of data on its characteristics and evaluation. The main objective of the presented paper was to evaluate the diversity of spring barley landraces originating from Poland. Historical data from standard field evaluation of agronomic traits, genetic data obtained from Inter Simple Sequence Repeat (ISSR) analysis and grain morphometric data were used. The analysis showed that groups of hulled and hulls barley accessions were substantially separate. Genetic and grain morphological variation did not show any relationship with eco-geographical conditions in the place of origin. There was also no clear division into forms with two- and six-row ears. The combination of the results of various types of analyzes describing this collection makes us believe that its chances of being used in research and breeding will increase.

Chili pepper is produced by family farmers in central Chile incorporating modern technologies and maintaining traditional practices. Although chili pepper is deeply rooted in the local culture, the agricultural system supporting its production and the germplasm involved are poorly studied. This work focused on two main landraces lacking information about what features (agronomic, morphological and chemical) distinguish them and how distinct they are. It is also of high importance to deepen our understanding of the agricultural system and the aspects that may affect its sustainability. An integrated approach was applied for the evaluation of social characteristics of farmers, the growing system, morphological traits, and selected chemical components. Between landraces, flower and fruit morphology was clearly distinct. Total phenolic content, antioxidant capacity and total carotenoid content showed higher values in fruits of cacho de cabra than in chileno negro. Both landraces had a higher total phenolic content than other Capsicum cultivars in the world. Farmers ascribe distinct attributes for the landraces regarding agronomic performance, fruit quality and processing applications. Characteristics that may affect the sustainability of the agricultural system are small farm size, relatives working as employees, and low farmers’ educational attainment. The study landraces are distinct and represent unique genetic material produced in an agricultural system facing important challenges where farmers have adapted to socio-economic pressures, externalizing plant production, reducing harvest costs, and developing innovations in product and marketing.

Common bean (Phaseolus vulgaris L.) provides critical nutrition and a livelihood for millions of smallholder farmers worldwide. Beans engage in symbiotic nitrogen fixation (SNF) with Rhizobia. Honduran hillside farmers farm marginal land and utilize few production inputs; therefore, bean varieties with high SNF capacity and environmental resiliency would be of benefit to them. We explored the diversity for SNF, agronomic traits, and water use efficiency (WUE) among 70 Honduran landrace, participatory bred (PPB), and conventionally bred bean varieties (HON panel) and 6 North American check varieties in 3 low-N field trials in Ontario, Canada and Honduras. Genetic diversity was measured with a 6K single nucleotide polymorphism (SNP) array, and phenotyping for agronomic, SNF, and WUE traits was carried out. STRUCTURE analysis revealed two subpopulations with admixture between the subpopulations. Nucleotide diversity was greater in the landraces than the PPB varieties across the genome, and multiple genomic regions were identified where population genetic differentiation between the landraces and PPB varieties was evident. Significant differences were found between varieties and breeding categories for agronomic traits, SNF, and WUE. Landraces had above average SNF capacity, conventional varieties showed higher yields, and PPB varieties performed well for WUE. Varieties with the best SNF capacity could be used in further participatory breeding efforts.

This study aims to evaluate the bio-morphological and biochemical variability of three Tunisian wild populations and one growing cultivar of purslane (Portulaca oleracea L.). The studied varieties should be easily distinguished by the color and the habitus of the plant as mentioned in literature, but the various analyses have shown a strong morphological heterogeneity within and among the wild and cultivated accessions as presented by the variance analysis test (ANOVA) and the PCA (Principal component analysis). We found high intrapopulation variability through the wild populations that make it hard to differentiate them only on the base of morphology. We analyzed the biochemical profile of those populations based on the analysis of freeze-dried samples of leaves and stems. We identified and quantified twelve different phenolic compounds by the HPLC-diode array detector (DAD) technique. Six phenolic acids and flavonoids were identified in the leaves and stems of the wild and cultivated populations. Sinapic acid and myricetin are the majors identified compounds through our samples. The results were significantly different in relation to the plant organs and to the geographic origin for most of the compounds. The obtained results highlighted the importance of Portulaca as a medicinal plant by showing its richness in phenols and flavonoids that have multi-medicinal effects besides their antioxidant power.

Agriculture is highly exposed to climate warming, and promoting traditional cultivars constitutes an adaptive farming mechanism from climate change impacts. This study compared seed traits and adaptability in the germinative process, through temperature and drought response, between a commercial cultivar and Mediterranean Phaseolus lunatus L. landraces. Genetic and phylogenetic analyses were conducted to characterize local cultivars. Optimal germination temperature, and water stress tolerance, with increasing polyethylene glycol (PEG) concentrations, were initially evaluated. Base temperature, thermal time, base potential and hydrotime were calculated to compare the thermal and hydric responses and competitiveness among cultivars. Eight molecular markers were analyzed to calculate polymorphism and divergence parameters, of which three, together with South American species accessions, were used to construct a Bayesian phylogeny. No major differences were found in seed traits, rather different bicolored patterns. A preference for high temperatures and fast germination were observed. The ‘Pintat’ landrace showed marked competitiveness compared to the commercial cultivar when faced with temperature and drought tolerance. No genetic differences were found among the Valencian landraces and the phylogeny confirmed their Andean origin. Promoting landraces for their greater resilience is a tool to help overcome the worldwide challenge deriving from climate change and loss of agrobiodiversity.