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Academic misconduct is ubiquitous, a fortiori during crisis periods. The present research examines undergraduates’ learning motivation, based on Self-Determination Theory and personality traits factors, according to the Big Five Factor Model, affecting academic misconduct across different time spans: Before, during, and after a life-changing event. Using online questionnaires, we measured the level of academic misconduct, learning motivation, and personality traits of 1090 social sciences students during five different time spans pre-COVID-19, during COVID-19 (before and after vaccination), and after COVID-19 (post and long post). The results showed significant differences in students’ self-reported academic misconduct levels among the different periods and similar misconduct levels in pre-COVID-19 and long post-COVID-19. Additionally, the findings exhibited that external motivation significantly increases academic misconduct and that two out of five personality traits (agreeableness and emotional stability) reduce their occurrences. We conclude that higher education preparedness for academic integrity during an emergency is still a desideratum and that ethical concerns should not be abandoned but rather be fully addressed during emergency periods. This could be addressed by instructors allocating tasks during emergency groups involving students with pro-social personalities (agreeableness and emotional stability) and intrinsic motivation to serve as social agents in deterring academic misconduct.