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The use of microbial seed priming may be a promising tool to improve the first stages of seed germination of several herbaceous species. In tomatoes (Solanum lycopersicum L.), enhanced germination and vigor, and biotic and abiotic stress control, with a reduction in chemicals, have been reported. In this study, seeds from two Italian tomato varieties (Canestrino di Lucca and Pisanello) were primed with seven different strains of plant growth-promoting rhizobacteria (PGPB) belonging to Azospirillum baldaniorum, A. brasilense, Methylobacterium symbioticum, Bacillus amyloliquefaciens, B. licheniformis, and B. subtilis. They were selected for their ability to produce auxin. The germination test was carried out on treated seeds and the germination percentage was calculated. The obtained seedlings were transplanted and kept in greenhouse conditions. After 60 d, fresh and dry weight, root number, and length of plantlets were recorded. A general and significant improvement in the growth parameters was observed in the treated plants. All microbial strains proved to be indolacetic acid (IAA) producers using the Salkowsky method. A positive relationship between root number and length, and amount of IAA was found. The overall results suggest that the microbial priming of tomato seed could be useful for advancing organic farming, sustainable agriculture, and environmental protection.

Plant pathologies significantly jeopardise global food security, necessitating the development of prompt and precise diagnostic methods. This study employs advanced deep learning techniques to evaluate the performance of nine convolutional neural networks (CNNs) in identifying a spectrum of phytosanitary issues affecting the foliage of Solanum lycopersicum (tomato). Ten thousand RGB images of leaf tissue were subsampled in training (64%), validation (16%), and test (20%) sets to rank the most suitable CNNs in expediting the diagnosis of plant disease. The study assessed the performance of eight well-known networks under identical hyperparameter conditions. Additionally, it introduced the GamaNNet architecture, a custom-designed model optimised for superior performance on this specific type of dataset. The investigational results were most promising for the innovative GamaNNet and ResNet-152, which both exhibited a 91% accuracy rate, as evidenced by their confusion matrices, ROC curves, and AUC metrics. In comparison, LeNet-5 and ResNet-50 demonstrated lower assertiveness, attaining accuracies of 74% and 69%, respectively. GoogLeNet and Inception-v3 emerged as the frontrunners, displaying diagnostic preeminence, achieving an average F1-score of 97%. Identifying such pathologies as Early Blight, Late Blight, Corynespora Leaf Spot, and Septoria Leaf Spot posed the most significant challenge for this class of problem.

Foliar diseases are the significant production constraints in tomatoes. Among them, foliar fungal diseases in tomatoes, such as early blight (Alternaria linaria), Septoria leaf spot (Septoria lycopersici), and late blight (Phytophthora infestans), which is oomycetes, have higher economic significance. This paper will discuss the etiology, host range, distribution, symptoms, and disease cycle to help us understand the biology, followed by management approaches emphasizing the resistance breeding approach for these diseases. We provide an analytical review of crop improvement efforts, including conventional and molecular methods for improving these diseases’ resistance. We discuss the importance of modern breeding tools, including genomics, genetic transformation, and genome editing, to improve the resistance to these diseases in the future.

Drought is one of the major abiotic stresses that affect plant growth and productivity, and plant stress responses are affected by both the intensity of stress and genotype. In Iraqi Kurdistan, tomato plants play a significant role in the country’s economy. Due to climate change, which causes soil moisture to diminish, the crop’s growth and yield have been dropping in recent years. Accordingly, the effects of simulated drought stress on germination parameters were assessed in 64 tomato accessions gathered from the Iraqi Kurdistan region in order to identify sensitive and tolerant accessions. In this respect, the responses associated with drought stress were observed phenotypically and biochemically. Germination percentage (GP) and morphological characteristics such as root length (RL), shoot length (SL), and shoot fresh weight (SFW) were significantly reduced in both stress treatments with polyethylene glycol (PEG-6000) (7.5% PEG and 15% PEG). On the other hand, significant changes in biochemical profiles such as proline content (PC), soluble sugar content (SSC), total phenolic content (TPC), antioxidant activity (AC), guaiacol peroxidase (GPA), catalase (CAT), and lipid peroxidation (LP) in tomato accessions were detected; all biochemical traits were increased in most tomato accessions under the PEG-induced treatments compared to the control treatment (0.0% PEG). Three tomato accessions (AC61 (Raza Pashayi), AC9 (Wrdi Be Tow), and AC63 (Sandra)) were found to be the most tolerant accessions under all drought conditions, whereas the performances of the other tested accessions (AC13 (Braw), AC30 (Yadgar), and AC8 (Israili)) were inferior. The OMIC analysis identified the biomarker parameters for differentiating the highly, moderately, and low tolerant groups as PC, SSC, and TPC. This study shows that early PEG-6000 screening for drought stress may help in choosing a genotype that is suitable for growth in water-stressed environments. Hence, Raza Pashayi, Wrdi Be Tow, and Sandra accessions, which had great performances under drought conditions, can be candidates for selection in a breeding program to improve the growth of plants and production in the areas that face water limits.

Diseases caused by begomoviruses such as tomato yellow leaf curl disease (TYLCD) are major constraints in agriculture. While the interactions between plants and monopartite begomoviruses during TYLCD pathogenesis have been explored extensively, how bipartite begomoviruses interact with tomato plants are understudied. Here we first found that a bipartite begomovirus tomato yellow leaf curl Thailand virus (TYLCTHV) induced stunted growth, leaf curl and yellowing in tomato plants. We then profiled the tomato transcriptomic changes in response to TYLCTHV infection. In total, we identified 2322 upregulated and 1377 downregulated genes. KEGG enrichment analysis of the differentially expressed genes (DEGs) revealed that many KEGG pathways regulating plant photosynthesis processes and defenses were enriched. Specifically, TYLCTHV infection disrupted the expression of DEGs that function in the light-harvesting chlorophyll protein complex, photosystem I and II, cytochrome b6/f complex, photosynthetic electron transport and F-type ATPase. Additionally, the expression of many DEGs regulating plant defenses including pathogen-associated molecular pattern (PAMP)-triggered immunity, effector-triggered immunity and hypersensitive response was upregulated upon TYLCTHV infection. Taken together, we found that during the pathogenesis of TYLCD induced by TYLCTHV, the virus actively disrupts plant photosynthesis processes and induces defense responses. Our findings add to our knowledge of TYLCD pathogenesis and plant–virus interactions in general.

Sida mottle virus (SiMoV) and Sida micrantha mosaic virus (SiMMV) are major Brazilian begomoviruses (Geminiviridae). However, the range of DNA–A identity of isolates of these viruses (81–100%) is not in agreement with the current criteria for Begomovirus species demarcation (n = 47) comprises a wide range of strains (with a continuum variation of 88.8–100% identity) infecting members of five botanical families (Malvaceae, Solanaceae, Fabaceae, Oxalidaceae, and Passifloraceae). The SiMoV group now comprises eight isolates (90–100% identity) restricted to Malvaceae hosts, including one former reference SiMMV isolate (gb|NC_077711) and SP77 (gb|FN557522; erroneously named as “true SiMMV”). Iteron analyses of metagenomics-derived information allowed for the discovery of the missing DNA–B cognate of SiMoV (93.5% intergenic region identity), confirming its bipartite nature. Henceforth, the correct identification of SiMoV and SiMMV isolates will be a crucial element for effective classical and biotech resistance breeding of the viral host species.

Recently, there has been significant consumer demand for traditional tomato varieties due to their favourable organoleptic qualities; however, the cultivation of these ancient varieties is becoming more restricted due to inadequate shelf life and low productivity. The “Pisanello” is a Tuscany tomato variety mainly cultivated in the provinces of Pisa, Lucca, and Livorno, and the main producers of this ancient tomato are small local farmers. The purpose of this work was, firstly, to study the range of quality parameters of this landrace tomato grown using different cultivation techniques, both in soil and soilless systems. For this purpose, the physicochemical parameters of Pisanello tomatoes grown in six different farms in Tuscany using both soilless and soil methods were investigated. Secondly, Pisanello tomatoes grown using different soilless techniques (rockwool and aeroponics) and soil-grown tomatoes (Pisanello and Goldmar F1) were evaluated from organoleptic and nutraceutical points of view. The sensory profile evaluation of all types of tomatoes under investigation was carried out. The aeroponic cultivation of Pisanello induced higher organoleptic qualities than those of tomatoes cultivated in rockwool (+34% for titratable acidity and +18% for total soluble solids). On the other hand, soilless rockwool-grown tomatoes showed a better sensory profile with respect to aeroponic cultivation. Nevertheless, the Goldmar F1 tomato, morphologically similar to ‘Pisanello’, received lower scores from the sensory panel compared to the Tuscany landrace tomato. This indicates that ancient tomato varieties selected over decades remain the preferred choice for consumers. Therefore, from a long-term viewpoint, the valorisation of local tomato varieties such as Pisanello can promote the regional commercialization of novel niche products originating from ancient fruit thanks to their acceptability by consumers.

The global demand for sustainable agricultural practices is increasing, necessitating the preference for fertilizers and organic stimulants with minimal chemical transformation. This study investigates the potential use of Mucuna (Mucuna pruriens sp.) and avocado (Persea americana Mills) seed residues in the cultivation of cherry-tomato crops (Lycopersicon esculentum Mill.) var. cerasiforme. After extracting L-dopa, the Mucuna ground residual seeds were incorporated into the soil substrate as an edaphic fertilizer. In contrast, the hydrolyzed avocado seed was mixed with water or the nutrient Long Ashton and applied as a foliar biostimulant to cherry plants grown in a greenhouse. We report the nutrients and amino acid content in hydrolysates of the avocado and Mucuna’s residue seeds and experiment with their effect in plants employing a completely blocked random design of eight treatments with four replicates. Data inspection involved analysis of variance, and mean differences were determined using Fisher’s least significant difference test. Significant differences (p < 0.05) were observed among the treatments regarding the number of flowers (70%), fruits (23%), and dry weight fruits (25%) in favor of those using these seed residues. A second experiment revealed that treatments containing both seed residues slightly increased the °Brix in fruits. This study supports with evidence that residual seeds benefit tomatoes and probably other important plants, contributing to the path to sustainable agriculture.

Water limits may have a disastrous impact on agricultural productivity, and the current climate change scenario presents additional problems for crops that rely on regular rainfall. Reactive oxygen species, such as hydrogen peroxide (H2O2), are a recognized stress-sensing mechanism in plants, and may be investigated as an approach for reducing stress impact via systemic acquired acclimation. Here, we looked at how H2O2 foliar application impacts tomato plants’ photosynthetic activity, antioxidant system, sugar chemical profile, and osmotic adjustment during drought and recovery. The experiment was in randomized blocks, 3 × 2 factorial design, with no, one, or two foliar application of 1 mM H2O2, on plants that were either continually watered or subjected to drought. The plants were tested both during the drought period and after they had resumed irrigation (recovered). Leaf water potential, chlorophyll a fluorescence, gas exchange, lipid peroxidation, H2O2 concentrations, phenols, proline, antioxidant enzyme activity, and sugar chemical profile were all measured. Our findings showed that H2O2 application generated metabolic alterations in tomato plants independent of water status, and that two applications in drought plants resulted in a 30% decrease in oxidative stress during drought and faster recovery following irrigation return, with greater production of defence-related molecules such as the APX enzyme, phenols, arabinose, and mannose. Continually watered plants also benefited from H2O2 application, which increased carbon assimilation by 35%.

When applied under abiotic stress conditions, triacontanol (TRIA) is effective in regulating the physicochemical processes in plants through mechanisms of defence such as abscisic acid (ABA) signalling. However, TRIA’s role in relation to ABA and stomatal opening is unclear. Therefore, the objective of this study was to evaluate the effects of TRIA and ABA and their combinations on different variables related to stomatal regulation in Solanum lycopersicum, which is subjected to drought stress, and on the leaf epidermis. The negative effects of stress and responses triggered by ABA were reversed in plants treated with TRIA. TRIA increased stomatal conductance and photosynthetic activity in the early hours, and it was determined that TRIA produced larger stomata than did the other treatments. Moreover, the chloroplasts of plants treated with TRIA were significantly smaller and more numerous than those of the control, which could improve CO2 diffusion efficiency and may be related to the regulation of stomatal opening and photosynthesis. Finally, the abaxial epidermis tests reaffirmed the inhibitory effects of TRIA on ABA on stomatal opening. These results confirm the important role of TRIA in regulating various processes in plants and processes triggered by ABA, such as those related to stomatal regulation.

RNA interference (RNAi) is a regulatory and protective mechanism that plays a crucial role in the growth, development, and control of plant responses to pathogens and abiotic stresses. In spray-induced gene silencing (SIGS), exogenous double-stranded RNAs (dsRNA) are used to efficiently regulate target genes via plant surface treatment. In this study, we aimed to evaluate the effect of specific exogenous dsRNAs on silencing different regions (promoter, protein-coding and intron) of the target SlTRY tomato gene, encoding an R3-type MYB repressor of anthocyanin biosynthesis. We also assessed the impact of targeting different SlTRY regions on the expression of genes involved in anthocyanin and flavonoid biosynthesis. This study demonstrated the critical importance of selecting the appropriate gene target region for dsRNA action. The highest inhibition of the SlTRY gene expression and activation of anthocyanin biosynthesis was achieved by dsRNA complementary to the protein-coding region of SlTRY gene, compared with dsRNAs targeting the SlTRY promoter or intron regions. Silencing the SlTRY gene increased the content of anthocyanins and boosted levels of other substances in the phenylpropanoid pathway, such as caffeoyl putrescine, chlorogenic acid, ferulic acid glucoside, feruloyl quinic acid, and rutin. This study is the first to examine the effects of four different dsRNAs targeting various regions of the SlTRY gene, an important negative regulator of anthocyanin biosynthesis.

The tomato (Solanum lycopersicum L.), a widely cultivated and economically important vegetable crop, is subject to a number of biotic and abiotic stresses in nature. Several abiotic and biotic stresses have been demonstrated to elevate the concentration of cytosolic free Ca2+ ([Ca2+]i) in Arabidopsis due to the influx of calcium ions. In this study, recombinant aequorin was introduced into the tomato in order to investigate the change in [Ca2+]i when treated with exogenous Ca2+. This resulted in strong luminescence signals, which were mainly observed in the roots. Luminescence signals were also detected in the whole plant, including the leaves, when a surfactant (Silwet L-77) was added to coelenterazine. The concentration of [Ca2+]i increased with the dosage of NaCl/elf18. The luminescence signals also showed a lower increase in intensity with elf18 treatment compared to NaCl treatment. Furthermore, the [Ca2+]i responses to other abiotic or biotic stresses, such as H2O2 and Pep1, were also evaluated. It was found that this transgenic tomato expressing aequorin can effectively detect changes in [Ca2+]i levels. The transgenic tomato expressing aequorin represents an effective tool for detecting changes in [Ca2+]i and provides a solid basis for investigating the adaptation mechanisms of tomatoes to various abiotic and biotic stresses. Moreover, the aequorin-based system would be a highly valuable tool for studying the specificity and crosstalk of plant signalling networks under abiotic and biotic stresses in tomatoes.

The causal agent of tomato leaf mold, Cladosporium fulvum, is prevalent in greenhouses worldwide, especially under high humidity conditions. Despite its economic impact, studies on antifungal agents targeting C. fulvum remain limited. This study evaluates biocontrol agents (BCAs) as alternatives to chemical controls for managing this disease, alongside the strobilurin fungicide azoxystrobin. From a Moroccan collection of potential BCAs, five bacterial isolates (Alcaligenes faecalis ACBC1, Pantoea agglomerans ACBC2, ACBP1, ACBP2, and Bacillus amyloliquefaciens SF14) and three fungal isolates (Trichoderma spp. OT1, AT2, and BT3) were selected and tested. The in vitro results demonstrated that P. agglomerans isolates reduced mycelial growth by over 60% at 12 days post-inoculation (dpi), while Trichoderma isolates achieved 100% inhibition in just 5 dpi. All bacterial isolates produced volatile organic compounds (VOCs) with mycelial inhibition rates ranging from 38.8% to 57.4%. Likewise, bacterial cell-free filtrates significantly inhibited the pathogen’s mycelial growth. Greenhouse tests validated these findings, showing that all the tested isolates were effective in reducing disease incidence and severity. Azoxystrobin effectively impeded C. fulvum growth, particularly in protective treatments. Fourier transform infrared spectroscopy (FTIR) analysis revealed significant biochemical changes in the treated plants, indicating fungal activity. This study provides valuable insights into the efficacy of these BCAs and azoxystrobin, contributing to integrated management strategies for tomato leaf mold disease.

The aim of this study was to evaluate phenotypic traits and genetic diversity of the 13 tomato (Solanum lycopersicum L.) varieties and 6 hybrids developed at the Institute of Horticulture Lithuanian Research Centre for Agriculture and Forestry (LRCAF IH). For the molecular characterisation, seven previously published microsatellite markers (SSR) were used. A24 and 26 alleles were detected in tomato varieties and hybrids, respectively. Based on the polymorphism information content (PIC) value, the most informative SSR primers for varieties were TMS52, TGS0007, LEMDDNa and Tom236-237, and the most informative SSR primers for hybrids were SSR248 and TMS52. In UPGMA cluster analysis, tomato varieties are grouped in some cases due to genetic relationships, as the same cluster cultivars ‘Viltis’ (the parent of cv. ‘Laukiai’) and ‘Aušriai’ (the progeny of cv. ‘Jurgiai’) are present. The grouping of all hybrids in the dendrogram is related to the parental forms, and it shows the usefulness of molecular markers for tomato breeding, as they can be used to trace the origin of hybrids and, eventually, varieties accurately. The knowledge about the genetic background of Lithuanian tomato cultivars will help plan targeted crosses in tomato breeding programs.

The use of natural-origin biomaterials in bioengineering has led to innovative approaches in agroforestry. Bacterial cellulose (BC), sharing the same chemical formula as plant-origin cellulose (PC), exhibits significantly different biochemical properties, including a high degree of crystallinity and superior water retention capacity. Previous research showed that natural-origin glucose-based chitin enhanced plant growth in both herbaceous and non-herbaceous plants. In this study, we produced BC in the laboratory and investigated its effects on the substrate and on Solanum lycopersicum seedlings. Soil amended with BC increased root growth compared with untreated seedlings. Additionally, under limited irrigation conditions, BC increased global developmental parameters including fresh and dry weight, as well as total carbon and nitrogen content. Under non-irrigation conditions, BC contributed substantially to plant survival. RNA sequencing (Illumina®) on BC-treated seedlings revealed that BC, despite its bacterial origin, did not stress the plants, confirming its innocuous nature, and it lightly induced genes related to root development and cell division as well as inhibition of stress responses and defense. The presence of BC in the organic substrate increased soil availability of phosphorus (P), iron (Fe), and potassium (K), correlating with enhanced nutrient uptake in plants. Our results demonstrate the potential of BC for improving soil nutrient availability and plant tolerance to low irrigation, making it valuable for agricultural and forestry purposes in the context of global warming.

Compost residue enriches soil health with the potential to enhance plant metabolism and hormonal balance, but has not yet been studied. A study was performed to determine how prevailing compost residue induces tomato (Solanum lycopersicum ‘Scotia’) plant morpho-physiology, phytohormones, and secondary metabolites. Plants were grown in soils with a previous history of annual (AN) and biennial (BI) compost amendments. The controls were soil without compost (C) amendment and municipal solid waste compost (MSWC) alone. The MSWC- and AN-plants had similar and significantly (p < 0.05) highest growth and photosynthetic activities compared to the BI- or C-plants. Total phenolics and lipid peroxidase activity were significantly (p < 0.001) high in BI-plants, while hydrogen peroxide and antioxidant capacity were significantly (p < 0.001) high in AN-plants. MSWC-plants recorded the highest cis-abscisic acid, followed by AN-, and then BI- and C-plants. Cis-zeatin, trans-zeatin, and isopentenyladenine ribosides were detected in the MSWC- and AN-plants but not in the BI- or C-plants. Furthermore, gibberellins GA53, GA19, and GA8 were high in the MSWC-plants, but only GA8 was detected in the AN plants and none in the others. Besides, MSWC plants exhibited the highest content of 1-aminocyclopropane-1-carboxylic acid. Conjugated salicylic acid was highest in the BI-plants, while jasmonic acid-isoleucine was highest in MSWC-plants and C plants. In conclusion, prevailing compost chemical residues upregulate plant growth, phytohormones, and metabolic compounds that can potentially increase plant growth and abiotic stress defense. Future work should investigate the flow of these compounds in plants under abiotic stress.

Tomato (Solanum lycopersicum L.) plants, wild type Ailsa Craig, and carotenoid mutant tangerine that accumulates prolycopene instead of all-trans-lycopene were exposed to a combined treatment by low light and low temperature for 5 days. The ability of plants to recover from the stress after development for 3 days at control conditions was followed as well. The suffered oxidative stress was evaluated by the extent of pigment content, lipid peroxidation, membrane stability, and H2O2 generation. The level of MDA content under combined treatment in tangerine implies that the mutant demonstrates lower sensitivity to stress in comparison with Ailsa Craig. The oxidative protective strategy of plants was estimated by following the antioxidant and antiradical activity of phenolic metabolites, including anthocyanins, as well as the activities of antioxidant enzymes superoxide dismutase (SOD), ascorbate peroxidase (APX) and catalase (CAT). Presented results revealed that the oxidative stress was much stronger expressed after exposure of both types of plants to low light combined with low temperature compared to that after treatment with only low light. The most significant antioxidant protection was provided by phenolic substances, including anthocyanins. The lower sensitivity of tangerine plants to low light can be attributed to the higher activity of the antioxidant enzyme CAT.

Background: Chronic Prostatitis/Chronic Pelvic Pain syndrome NIH-class III is a widespread condition affecting men universally, with existing treatments showing limited success. This study evaluated the efficacy and safety of a natural supplement, composed of Serenoa repens, Solanum lycopersicum, lycopene, and bromelain, in managing symptoms of this condition among a substantial patient group. Methods: In this prospective study, 245 patients diagnosed with Chronic Prostatitis/Chronic Pelvic Pain syndrome NIH-class III were treated with the aforementioned supplement, alongside lifestyle alterations, such as refraining from spicy foods, alcohol, caffeine, and cycling, for a duration of three months. Patients’ progress was assessed at one and three months using the National Institutes of Health Chronic Prostatitis Symptom Index (NIH-CPSI), the International Prostate Symptom Index (IPSS), quality of life (QoL) scores, and changes in total prostate-specific antigen (PSA) levels. Results: The supplement was well received with no serious adverse events reported. Significant improvements were observed in NIH-CPSI scores, IPSS, QoL scores, and a substantial decrease in total PSA levels at three months compared to baseline, with a positive trend noted from one-month to three-month evaluations. This was consistent in either patients with predominantly voiding or storage urinary symptoms. Conclusions: Our results suggest that this natural supplement in conjunction with lifestyle changes could offer a safe and effective alternative treatment for patients suffering from Chronic Prostatitis/Chronic Pelvic Pain syndrome NIH-class III. However, these findings require validation through further large-scale randomized controlled trials.

Salinity stress impairs growth and physiological performance in tomato, which is one of the most economically important vegetables and is widely cultivated in arid and semi-arid areas of the world. Plant landraces, which are heterogeneous, local adaptations of domesticated species, offer a unique opportunity to valorize available germplasm, underpinning the productivity, resilience, and adaptive capacity of staple crops in vulnerable environments. Here, we investigated the response of fully mature tomato plants from a commercial variety, an ancestral wild relative, and a landrace under short-term salinity exposure, as well as their ability to recover upon cessation of stress. The heterogeneous panel evaluated in this study revealed different adaptative strategies to cope the stress. Our data highlighted the ability of the tomato clade to handle low and intermediate salinity stress for short-term exposure time, as well as its capacity to recover after the cessation of stress, although inter- and intraspecific variations in morphological and physiological responses to salinity were observed. Overall, the landrace and the wild type performed similarly to control conditions under low salinity, demonstrating an improved ability to maintain ionic balance. In contrast, the commercial genotype showed susceptibility and severe symptoms even under low salinity, with pronounced reductions in K+/Na+ ratio, PSII photochemical efficiency, and photosynthetic pigments. This research confirmed that improved salt tolerant genotypes can lead to substantial, positive impacts on horticultural production. While the salt tolerance mechanism of domesticated tomato was efficient under mild stress conditions, it failed at higher salinity levels.

The diversity of Geminiviridae and Alphasatellitidae species in tomatoes was assessed via high-throughput sequencing of 154 symptomatic foliar samples collected from 2002 to 2017 across seven Brazilian biomes. The first pool (BP1) comprised 73 samples from the North (13), Northeast (36), and South (24) regions. Sixteen begomoviruses and one Topilevirus were detected in BP1. Four begomovirus-like contigs were identified as putative novel species (NS). NS#1 was reported in the semi-arid (Northeast) region and NS#2 and NS#4 in mild subtropical climates (South region), whereas NS#3 was detected in the warm and humid (North) region. The second pool (BP2) comprised 81 samples from Southeast (39) and Central–West (42) regions. Fourteen viruses and subviral agents were detected in BP2, including two topileviruses, a putative novel begomovirus (NS#5), and two alphasatellites occurring in continental highland areas. The five putative novel begomoviruses displayed strict endemic distributions. Conversely, tomato mottle leaf curl virus (a monopartite species) displayed the most widespread distribution occurring across the seven sampled biomes. The overall diversity and frequency of mixed infections were higher in susceptible (16 viruses + alphasatellites) in comparison to tolerant (carrying the Ty–1 or Ty–3 introgressions) samples, which displayed 9 viruses. This complex panorama reinforces the notion that the tomato-associated Geminiviridae diversity is yet underestimated in Neotropical regions.

Agricultural systems are currently facing significant issues, primarily due to population growth rates in the context of global climate change. Rising temperatures cause plant heat stress and impact crop yield, which in turn compromises global food production and safety. Climate change is also having a significant impact on water availability around the world, and droughts are becoming more frequent and severe in many regions. The combined effect of both heat and drought stresses increases plant damage, resulting in reduced plant development and productivity loss. Therefore, developing heat–drought-tolerant crop varieties is crucial for enhancing yield under these challenging conditions. Tomato (Solanum lycopersicum L.), a major vegetable crop highly appreciated for its nutritional qualities, is particularly sensitive to extreme temperatures, which have a significant negative impact on tomato fruit setting and cause male gametophyte abortion. In this work, a classical genetic approach was employed to identify tomato genotypes showing a resilient response to combined heat and drought stress conditions. A phenotype screening of a natural germplasm collection and an ethyl methanesulfonate (EMS) mutagenized population resulted in the identification of a significant number of tomato lines tolerant to combined heat and drought conditions, specifically 161 EMS lines and 24 natural accessions as tolerant. In addition, TILLING and Eco-TILLING analyses were used as proof-of-concept to isolate new genetic variants of genes previously reported as key regulators of abiotic stress responses in different species. The identification of these variants holds the potential to provide suitable plant material for breeding programs focused on enhancing tomato resilience to adverse climate conditions.

Viral diseases pose a significant threat to tomato crops (Solanum lycopersicum L.), one of the world’s most economically important vegetable crops. The limited genetic diversity of cultivated tomatoes contributes to their high susceptibility to viral infections. To address this challenge, tomato breeding programs must harness the genetic resources found in native populations and wild relatives. Breeding efforts may aim to develop broad-spectrum resistance against the virome. To identify the viruses naturally infecting 19 advanced lines, derived from native tomatoes, high-throughput sequencing (HTS) of small RNAs and confirmation with PCR and RT-PCR were used. Single and mixed infections with tomato mosaic virus (ToMV), tomato golden mosaic virus (ToGMoV), and pepper huasteco yellow vein virus (PHYVV) were detected. The complete consensus genomes of three variants of Mexican ToMV isolates were reconstructed, potentially forming a new ToMV clade with a distinct 3’ UTR. The absence of reported mutations associated with resistance-breaking to ToMV suggests that the Tm-1, Tm-2, and Tm-22 genes could theoretically be used to confer resistance. However, the high mutation rates and a 63 nucleotide insertion in the 3’ UTR, as well as amino acid mutations in the ORFs encoding 126 KDa, 183 KDa, and MP of Mexican ToMV isolates, suggest that it is necessary to evaluate the capacity of these variants to overcome Tm-1, Tm-2, and Tm-22 resistance genes. This evaluation, along with the characterization of advanced lines using molecular markers linked to these resistant genes, will be addressed in future studies as part of the breeding strategy. This study emphasizes the importance of using HTS for accurate identification and characterization of plant viruses that naturally infect tomato germplasm based on the consensus genome sequences. This study provides crucial insights to select appropriate disease management strategies and resistance genes and guide breeding efforts toward the development of virus-resistant tomato varieties.

Orobanche aegyptiaca Pers. is a holoparasitic plant that severely reduces tomato (Solanum lycopersicum L.) production in China. However, there is a lack of effective control methods and few known sources of genetic resistance. In this study, we focused on key genes in the JAZ family, comparing the JAZ family in Arabidopsis thaliana (L. Heynh.) to the tomato genome. After identifying the JAZ family members in S. lycopersicum, we performed chromosomal localization and linear analysis with phylogenetic relationship analysis of the JAZ family. We also analyzed the gene structure of the JAZ gene family members in tomato and the homology of the JAZ genes among the different species to study their relatedness. The key genes for O. aegyptiaca resistance were identified using VIGS (virus-induced gene silencing), and the parasitization rate of silenced tomato plants against O. aegyptiaca increased by 47.23–91.13%. The genes were localized in the nucleus by subcellular localization. Heterologous overexpression in A. thaliana showed that the key gene had a strong effect on the parasitization process of O. aegyptiaca, and the overexpression of the key gene reduced the parasitization rate of O. aegyptiaca 1.69-fold. Finally, it was found that the SLJAZ15 gene can positively regulate the hormone content in tomato plants and affect plant growth and development, further elucidating the function of this gene.

The effects of high-intensity blue light (HIBL, 500/1000 µmol m−2s−1, 450 nm) on Solanum lycopersicum mutants with high pigment (hp) and low pigment (lp) levels and cryptochrome 1 (cry1) deficiency on photosynthesis, chlorophylls, phenols, anthocyanins, nonenzymatic antioxidant activity, carotenoid composition, and the expression of light-dependent genes were investigated. The plants, grown under white light for 42 days, were exposed to HIBL for 72 h. The hp mutant quickly adapted to 500 µmol m−2s−1 HIBL, exhibiting enhanced photosynthesis, increased anthocyanin and carotenoids (beta-carotene, zeaxanthin), and increased expression of key genes involved in pigment biosynthesis (PSY1, PAL1, CHS, ANS) and PSII proteins along with an increase in nonenzymatic antioxidant activity. At 1000 µmol m−2s−1 HIBL, the lp mutant showed the highest photosynthetic activity, enhanced expression of genes associated with PSII external proteins (psbO, psbP, psbQ), and increased in neoxanthin content. This mutant demonstrated greater resistance at the higher HIBL, demonstrating increased stomatal conductance and photosynthesis rate. The cry1 mutant exhibited the highest non-photochemical quenching (NPQ) but had the lowest pigment contents and decreased photosynthetic rate and PSII activity, highlighting the critical role of CRY1 in adaptation to HIBL. The hp and lp mutants use distinct adaptation strategies, which are significantly hindered by the cry1 mutation. The pigment content appears to be crucial for adaptation at moderate HIBL doses, while CRY1 content and stomatal activity become more critical at higher doses.

Abiotic stress results in various physiological and biochemical changes in plants. Osmolytes play a pivotal role in improving the tolerance to abiotic stress in plants. This study evaluated the effectiveness of a commercial formulation, Carrabiitol®, an oligosaccharide polyol composition, in alleviating adverse impacts of abiotic stress in tomato (Solanum lycopersicum L. var. Arka Rakshak) plants. Plants were raised from seed and treated with 1 mL/L, 2 mL/L, and 3 mL/L of Carrabiitol®. The foliage of developing plants was treated at the 2–3 leaf stage (T2, T3, and T4) and at pre-flowering stage (T5, T6, and T7). Growth conditions were compared with those of plants developed from untreated seed (T1). Developing tomato plants were then exposed to flooding, salinity (50 mM NaCl), high temperature (41.1 °C), or drought at the flowering stage. Plants were evaluated for their dry weight, leaf water potential, stomatal conductance, transpiration rate, antioxidant potential, chlorophyll, carotenoid, glucose, sucrose, malondialdehyde, and proline contents. Pre-treated seed, which received a booster treatment at the 2–3 leaf stage (T4 = seed treatment and booster at the 2–3 leaf stage with 3 mL/L Carrabiitol®) and pre-flowering stages (T5, T6, and T7 = seed treatment and booster doses at the pre-flowering stage with 1, 2, and 3 mL/L Carrabiitol®, respectively), was effective in mitigating negative impacts on various growth parameters of stressed tomato plants (p < 0.05). Carrabiitol® may be an effective, sustainable, and bio-rational organic osmolyte formulation for reducing the effects of abiotic stress on plant growth and productivity.

Global plant production is challenged by unpredictable (a)biotic stresses that occur individually, simultaneously or staggered. Due to an increasing demand for environmentally friendly plant production, new sustainable, universal, and preventive measures in crop protection are needed. We postulate thermopriming as a suitable procedure that fulfills these requirements. Therefore, we performed thermopriming as a pre-conditioning on tomato transplants in combination with two subsequent salt stress treatments to evaluate their single and combined physiological effects on leaves and fruits with regard to plant performance, fruit yield and quality. We identified a cross-tolerance to salinity that was triggered by the preceding thermopriming treatment and resulted in an accumulation of phenols and flavonols in the leaves. Plant growth and fruit yield were initially delayed after the stress treatments but recovered later. In regard to fruit quality, we found an increase in carotenoid and starch contents in fruits due to thermopriming, while sugars and titratable acidity were not affected. Our results indicate that thermopriming can mitigate the impact of subsequent and recurrent stress events on plant performance and yield under production-like conditions.

Water deficit conditions trigger the production of a chemical signal, the phytohormone abscisic acid (ABA), which coordinates multiple responses at different temporal and spatial scales. Despite the complexity of natural drought conditions, the modulation of ABA signaling could be harnessed to ameliorate the drought performances of crops in the face of increasingly challenging climate conditions. Based on recent studies, increasing ABA sensitivity can lead to genotypes with improved drought resistance traits, with sustained biomass production in water-limiting environments and little or no costs with respect to biomass production under optimal conditions. However, variations in ABA production and sensitivity lead to changes in various aspects of reproductive development, including flowering time. Here we provide an updated summary of the literature on ABA-related genes in tomato and discuss how their manipulation can impact water-deficit-related responses and/or other developmental traits. We suggest that a better understanding of specific ABA components’ function or their expression may offer novel tools to specifically engineer drought resistance without affecting developmental traits.

Water deficit (WD) promotes great losses in agriculture, and the development of new sustainable technologies to mitigate the effects of this stress on plants is essential. This study aimed to evaluate the morphophysiological and biochemical alterations induced by the priming of tomato seeds with different formulations in plants under field capacity and WD conditions. In the first experiment, the treatments consisted of nanoparticles of alginate/chitosan and chitosan/tripolyphosphate containing gibberellic acid (GA3) in different concentrations (0.5, 5, and 50 µg mL−1 GA3), in addition to control with deionized water. The alginate/chitosan (5 µg mL−1 GA3) provided the greatest gains in plant growth under field capacity. In addition, under WD this treatment reduced damage to photosystem II (−14%), stomatal conductance (−13%), and water loss (−38%) and increased the instantaneous carboxylation efficiency (+24%) and intrinsic water use efficiency (+12%). In the second experiment, the treatments were alginate/chitosan nanoparticles containing GA3 (NPGA3 5 µg mL−1), free GA3 (GA3 5 µg mL−1), nanoparticles without GA3 (NP), deionized water (WATER), and non-primed seeds (CONT). Under WD, GA3 and CONT maintained plant growth and lost water rapidly, reducing stomatal conductance (−87%) and net photosynthesis (−69%). In contrast, NPGA3 decreased leaf area (−44%) and increased root-to-shoot ratio (+39%) when compared to GA3, reducing water loss (−28%). Activation of protective mechanisms (e.g., superoxide dismutase and catalase activities) by WATER, NPGA3, and NP treatments also resulted in lower susceptibility to WD compared to CONT and GA3. The results highlight the positive effect of seed priming on plant response to WD, which was enhanced by the use of nanoencapsulated GA3.

Bacterial wilt (BW) of tomatoes, caused by Ralstonia solanacearum, is a devastating disease that results in large annual yield losses worldwide. Management of BW of tomatoes is difficult due to the soil-borne nature of the pathogen. One of the best ways to mitigate the losses is through breeding for disease resistance. Moreover, plant height (PH) is a crucial element related to plant architecture, which determines nutrient management and mechanical harvesting in tomatoes. An intraspecific F2 segregating population (NC 11212) of tomatoes was developed by crossing NC 84173 (tall, BW susceptible) × CLN1466EA (short, BW resistant). We performed quantitative trait loci (QTL) mapping using single nucleotide polymorphic (SNP) markers and the NC 11212 F2 segregating population. The QTL analysis for BW resistance revealed a total of three QTLs on chromosomes 1, 2, and 3, explaining phenotypic variation (R2) ranging from 3.6% to 14.9%, whereas the QTL analysis for PH also detected three QTLs on chromosomes 1, 8, and 11, explaining R2 ranging from 7.1% to 11%. This work thus provides information to improve BW resistance and plant architecture-related traits in tomatoes.

The tomato is one of the most important vegetable crops grown worldwide. Tomato brown rugose fruit virus (ToBRFV), a seed-borne tobamovirus, poses a serious threat to tomato production due to its ability to break the resistant genes (Tm-1, Tm-2, Tm-22) in tomatoes. The objective of this work was to identify new resistant source(s) of tomato germplasm against ToBRFV. To achieve this aim, a total of 476 accessions from 12 Solanum species were tested with the ToBRFV US isolate for their resistance and susceptibility. As a result, a total of 44 asymptomatic accessions were identified as resistant/tolerant, including thirty-one accessions of S. pimpinellifolium, one accession of S. corneliomulleri, four accessions of S. habrochaites, three accessions of S. peruvianum, and five accessions of S. subsection lycopersicon hybrid. Further analyses using serological tests identified four highly resistant S. pimpinellifolium lines, PI 390713, PI 390714, PI 390716, and PI 390717. The inheritance of resistance in the selected lines was verified in the next generation and confirmed using RT-qPCR. To our knowledge, this is a first report of high resistance to ToBRFV in S. pimpinellifolium. These new genetic resources will expand the genetic pool available for breeders to develop new resistant cultivars of tomato against ToBRFV.

The fruit weight is an important guideline for breeders and farmers to increase marketable productions, although conventionally it requires destructive measurements. The combination of image-based phenotyping (IBP) approaches with multivariate analysis has the potential to further improve the line selection based on economical trait, like fruit weight. Therefore, this study aimed to evaluate the potential of image-derived phenotypic traits as proxies for individual fruits weight estimation using multivariate analysis. To this end, an IBP experimentation was carried out on five populations of low-land tomato. Specifically, the Mawar (M; 10 plants), Karina (K; 10 plants), and F2 generation cross (100 lines) samples were used to extract training data for the proposed estimation model, while data derived from M/K//K backcross population (35 lines) and F5 population (50 lines) plants were used for destructive and non-destructive validation, respectively. Several phenotypic traits were extracted from each imaged tomato fruit, including the slice and whole fruit area (FA), round (FR), width (FW), height (FH), and red (RI), green (GI) and blue index (BI), and used as inputs of a genetic- and multivariate-based method for non-destructively predicting its fresh weight (FFW). Based on this research, the whole FA has the greatest potential in predicting tomato FFW regardless to the analyzed cultivar. The relevant model exhibited high power in predicting FFW, as explained by R2-adjusted, R2-deviation and RMSE statistics obtained for calibration (81.30%, 0.20%, 3.14 g, respectively), destructive (69.80%, 0.90%, 4.46 g, respectively) and non-destructive validation (80.20%, 0.50%, 2.12 g, respectively). These results suggest the potential applicability of the proposed IBP approach in guiding field robots or machines for precision harvesting based on non-destructive estimations of fruit weight from image-derived area, thereby enhancing agricultural practices in lowland tomato cultivation.

Bacterial wilt (BW), caused by Ralstonia solanacearum, is one of the devastating diseases in tomatoes (Solanum lycopersicum L.). The use of resistant cultivars and breeding for genetic resistance is the most effective, economical, and environmentally friendly management strategy for this disease. It is necessary to screen diverse germplasm and cultivated genotypes to identify resistant resources and to develop resistant cultivars in tomatoes to combat the changing pathogen isolates. This study evaluated 40 United States Department of Agriculture (USDA) tomato accessions for their BW resistance to the R. solanacearum isolate P822 under greenhouse conditions. The tomato plants were inoculated and visually assessed to observe their symptoms, and the disease severity was scored on a scale of 0 to 4 (0 = no leaf wilted, 1 = 25% of leaves wilted, 2 = 50% leaves wilted, 3 = 75% of leaves wilted, and 4 = 100% leaves wilted). Five accessions (PI 645370, PI 647306, PI 600993, PI 355110, and PI 270210) were observed as BW resistance, with PI 645370 showing the greatest resistance. The broad-sense heritability for BW resistance was estimated as 59.9% and 42.8% based on a 0–4 scale of disease incidence and the disease severity index, respectively. Two distinct clusters (sub-populations) were detected among 39 of the 40 accessions. The five identified BW-resistant accessions were distributed in both clusters, suggesting a likely difference in the genetic base among the five resistance accessions. The resistant accessions will contribute significantly to the tomato breeding program to develop new cultivars with BW resistance.

Drought, a crucial abiotic stressor, markedly reduces the growth and yield of tomato crops (Solanum lycopersicum L.). Consequently, adopting drought-resistant cultivars and implementing breeding programs to enhance drought tolerance have emerged as enduring solutions to alleviate the adverse effects of drought in various tomato cultivation regions. In this study, 68 United States Department of Agriculture (USDA) tomato accessions were assessed in a controlled greenhouse experiment, encompassing both water deficit treatment and a control group subjected to standard watering conditions. The experiment was arranged in a randomized complete block design with three replications. The results of this study pinpointed four accessions, PI 365956, PI 584456, PI 390510, and PI 370091, as drought-tolerant accessions. Additionally, high broad-sense heritability was revealed for leaf wilting, leaf rolling, and SPAD chlorophyll content (total leaf chlorophyll). Furthermore, positive correlations were found among parameters associated with leaf wilting, leaf rolling, and SPAD chlorophyll content. The findings offer valuable insights for tomato breeding initiatives, especially those focused on enhancing drought tolerance in elite cultivars. Future studies will expand the evaluation to include a larger pool of tomato accessions and conduct a genome-wide association study to identify single nucleotide polymorphism (SNP) markers for molecular breeding in tomatoes.

The latest research has shown that chitosan acts as a growth stimulator and elicitor in plants, including resistance to biotic and abiotic factors. However, increasing concentrations could possibly make chitosan a source of stress for plants. In this study, we investigated the effect of low-molecular-weight chitosan hydrolysate on the root development of tomato (Solanum lycoperscum) cultivars Red Cherry, Lel, and Tytan. The growth rate change, together with total phenolic content, phenylalanine ammonia-lyase (PAL) activity, and gene expression, were studied in relation to tomatoes. High concentrations of chitosan negatively affect the growth of tomato seedlings and contribute to changes in the tropism of the seedling roots. After the addition of chitosan hydrolysate, the PAL activity and the total phenolic content decreased 24 h later. PAL is a key enzyme in the biosynthesis of many plant stress factors. An analysis of the tomato PAL gene family was carried out. The SlPAL gene expression in the seedlings of cv. Cherry increased 1.5 times after 48 h, while in cv. Lel, the expression stably decreased in the presence of chitosan. The obtained results are supposed to aid our understanding of the mechanisms underlying the effects of chitosan on plant development and further its successful application in agriculture as well as in research on plant stress.

The use of biostimulants and biofilms in agriculture is constantly increasing, as they may support plant growth and productivity by improving nutrient absorption, increasing stress resilience and providing sustainable alternatives to chemical management practices. In this work, two commercial products based on Trichoderma afroharzianum strain T22 (Trianum P®) and a seaweed extract from Ascophyllum nodosum (Phylgreen®) were tested on industrial tomato plants (Solanum lycopersicum var. Heinz 5108F1) in a field experiment. The effects of single and combined applications of microbial and plant biostimulants on plants grown on two different biodegradable mulch films were evaluated in terms of changes in the metabolic profiles of leaves and berries. Untargeted metabolomics analysis by LC-MS Q-TOF revealed the presence of several significantly accumulated compounds, depending on the biostimulant treatment, the mulch biofilm and the tissue examined. Among the differential compounds identified, some metabolites, belonging to alkaloids, flavonoids and their derivatives, were more abundant in tomato berries and leaves upon application of Trichoderma-based product. Interestingly, the biostimulants, when applied alone, similarly affected the plant metabolome compared to control or combined treatments, while significant differences were observed according to the mulch biofilm applied.

Some of the key pests of tomatoes are virus vectors, such as whiteflies, green peach aphids, and thrips, mainly because there is a lack of full resistance to the transmitted viruses. Alternatives to reduce this problem include the use of a push-and-pull strategy. Hence, this work assessed the association between Solanum habrochaites PI 1344117, used as a companion plant, and commercial tomato varieties over tomato virus vectors and the yield quality and quantity. Field and greenhouse trials were run during the 2015, 2016, 2018, and 2019 seasons. The treatments were BRS Tospodoro and BRS Tyão cultivated as monocrops and associated with PI-134417. The number of these insects was assessed by directly counting ten plants per plot and using captures on yellow sticky traps settled in the center of the plots. The yield and the number of irregularly ripening fruits (a symptom caused by whiteflies) were also measured. Both commercial cultivars gained from the protective effect of PI 134417, expressed by the significant reduction in the virus vectors on the plants. It was also noticed that there was a reduction in the number of irregularly ripening fruits, improving the fruit quality. These results encourage the use of wild and commercial tomato genotypes in association with implementing strategies to control tomato virus vectors, reducing the need to rely only on a chemical control.

Bacterial spot (BS) of tomato (S. lycopersicum), caused by Xanthomonas spp., namely X. euvesicatoria (Xeu), is one of the major threats for the production of this crop worldwide. Developing new biocontrol solutions against this disease will allow disease management strategies to be less based on Cu compounds. Nanoclays, such as montmorillonite (NMT), have been under investigation for their antimicrobial activity, or as delivery tools/stabilizers for organic compounds, such as essential oils (EOs), that also possess antimicrobial activity against plant pathogens. This work aims to assess how the application of NMT alone or incorporating S. montana EO on Xeu-infected hosts (var. Oxheart) affects the shoots’ redox status and antioxidant defense mechanisms. In vitro shoots, grown on Murashige and Skoog medium, were divided in two groups, Xeu-infected and uninfected (control) shoots. Shoots of each group were then treated with NMT, S. montana EO, EO-NMT. Results show that the NMT was able to reduce Xeu bacterial amount, while reducing ROS production and keeping the transcript levels of the defense-related genes close to those of the control. When applied to uninfected shoots, the treatments triggered the production of ROS and upregulated the phenylpropanoid and hormone pathway, which suggest that they act as defense elicitors. Globally, the results indicate that NMT has the potential to integrate BS management strategies, due to its antimicrobial activity, and that EO and/or nanoclays could be successfully employed as new disease preventive strategies, since they enhance the healthy shoots’ defense, thus potentially limiting the pathogen establishment.

Cadmium (Cd) contamination is a growing concern, as exposure to the metal has been shown to inhibit plant growth and development. However, soil Cd pollution in China is typically mild, and thus its concentration often does not impede plant growth. On the other hand, it is unknown if increased plant growth impacts Cd uptake, movement, and accumulation. Here, we analyzed the relationship between Cd accumulation in 31 tomato cultivars and the impact on specific growth parameters in mild Cd contamination. The results showed that there are variations in the Cd distribution among the 31 tomato cultivars studied. There were higher Cd concentrations in shoots of the cultivar ‘SV3557’, whereas root Cd concentrations were the lowest. The roots of the cultivar ‘HF11’ recorded the lowest Cd content but had higher Cd content in the shoots. The Cd concentration in roots and shoots was not related to root length, plant height, and root weight. However, Cd accumulation in the shoots was markedly promoted by root length and plant height, and Cd accumulation in the roots was promoted by root weight. Subsequently, we imposed Cd on four selected tomato cultivars to ascertain their accumulation in the shoot tissues. The results revealed that, among the four tomato cultivars, Cd was highly accumulated in the leaves, followed by the stems, and the fruits (leaf > stem > fruit). When identifying significant loci associated with Cd accumulation in tomato plants, it is crucial to find a suitable indicator to assess the plant’s ability to accumulate Cd. Thus, Cd concentration in shoots can be used as a reliable proxy for evaluating tomato plants’ capacity for Cd accumulation. This study serves as a valuable reference in guiding the selection of such an index.

Hypertrophy development induced by the overexpression of SlbHLH22 (also called SlUPA-like) was susceptible to Xanthomonas in tomatoes. Transcriptome and metabolome analyses were performed on the hypertrophy leaves of a SlbHLH22-overexpressed line (OE) and wild type (WT) to investigate the molecular mechanism. Metabolome analysis revealed that six key metabolites were over-accumulated in the OE, including Acetylserine/O-Acetyl-L-serine, Glucono-1,5-lactone, Gluconate, 2-Oxoglutarate, and Loganate, implying that the OE plants increased salt or oxidant resistance under normal growth conditions. The RNA-seq analysis showed the changed expressions of downstream genes involved in high-energy consumption, photosynthesis, and transcription regulation in OE lines, and we hypothesized that these biological processes were related to the GTgamma subfamily of trihelix factors. The RT-PCR results showed that the expressions of the GTgamma genes in tomatoes, i.e., SlGT-7 and SlGT-36, were suppressed in the hypertrophy development. The expression of the GTgamma gene was downregulated by salinity, indicating a coordinated role of GTgamma in hypertrophy development and salt stress. Further research showed that both SlGT-7 and SlGT-36 were highly expressed in leaves and could be significantly induced by abscisic acid (ABA). The GTgamma protein had a putative phosphorylation site at S96. These results suggested GTgamma’s role in hypertrophy development by increasing the salt resistance.

The aim of this study was to support the use of waste materials formed from a mixture of technogenic soils for growing plants through adding vermicompost leachates. The effect on the growth of underground and above-ground biomass was evaluated on plants of the bush variety of tomato (Solanum lycopersicum). Three different types of biodegradable waste (apple pomace, matolin, and horse manure) were used in the experiments, from which individual vermicomposts were subsequently produced. The effect of the addition of vermicompost leachates to the soil was manifested in all the statistically evaluated parameters of the bush tomato plants. It was found that the highest values were achieved for the root weight (+2.91 g; p < 0.01) and for the stem (+1.92 g, p < 0.01). The lowest values were observed in the control plants without application of the vermicompost leachates.

Sucrose, the primary carbon transport mode and vital carbohydrate for higher plants, significantly impacts plant growth, development, yield, and quality formation. Its metabolism involves three key steps: synthesis, transport, and degradation. Two genome triplication events have occurred in Solanaceae, which have resulted in massive gene loss. In this study, a total of 48 and 65 genes from seven sucrose metabolism gene families in Vitis vinifera and Solanum lycopersicum were identified, respectively. The number of members comprising the different gene families varied widely. And there were significant variations in the pattern of gene duplication and loss in the tomato following two WGD events. Tandem duplication is a major factor in the expansion of the SWEET and Acid INV gene families. All the genes are irregularly distributed on the chromosomes, with the majority of the genes showing collinearity with the grape, particularly the CIN family. And the seven gene families were subjected to a purifying selection. The expression patterns of the different gene families exhibited notable variations. This study presents basic information about the sucrose metabolism genes in the tomato and grape, and paves the way for further investigations into the impact of SCT events on the phylogeny, gene retention duplication, and function of sucrose metabolism gene families in the tomato or Solanaceae, and the adaptive evolution of the tomato.

The effects of high-intensity light on the pigment content, photosynthetic rate, and fluorescence parameters of photosystem II in high-pigment tomato mutants (hp 3005) and low-pigment mutants (lp 3617) were investigated. This study also evaluated the dry weight percentage of low molecular weight antioxidant capacity, expression patterns of some photoreceptor-regulated genes, and structural aspects of leaf mesophyll cells. The 3005 mutant displayed increased levels of photosynthetic pigments and anthocyanins, whereas the 3617 mutant demonstrated a heightened content of ultraviolet-absorbing pigments. The photosynthetic rate, photosystem II activity, antioxidant capacity, and carotenoid content were most pronounced in the high-pigment mutant after 72 h exposure to intense light. This mutant also exhibited an increase in leaf thickness and water content when exposed to high-intensity light, suggesting superior physiological adaptability and reduced photoinhibition. Our findings indicate that the enhanced adaptability of the high-pigment mutant might be attributed to increased flavonoid and carotenoid contents, leading to augmented expression of key genes associated with pigment synthesis and light regulation.

High salt levels in soil can severely limit plant development and diminish the positive effect of plant-growth-promoting rhizobacteria (PGPR). However, extracts of organisms adapted to high salinity, such as Opuntia ficus-indica (OFI) and Enteromorpha intestinalis (EI), can restore the growth of PGPR. Therefore, we used OFI or EI extracts and their combination with the PGPR Achromobacter xylosoxidans BOA4 to evaluate salt stress relief in tomato (Solanum lycopersicum). The experimental setup consisted of a plant pot trial under greenhouse conditions with 12 treatments: control, irrigation with OFI extract; EI extract; BOA4-inoculated plus OFI extract and BOA4-inoculated plus EI extract under no salinity or salinity conditions (150 mM NaCl). The percentage of germination, and plant’s fresh and dry weight were registered 30 and 46 days after sowing. At 46 days, the ratio between proline and glutamic acid concentration (PR/GA) was determined, expecting high PR/GA ratios in plants more responsive to salt stress since proline is an osmolyte mainly synthesized from glutamate. The results showed that 52% of the control seeds under salt stress germinated, a figure that was increased to 92% in OFI-treated seeds. Tomato plants were shown to be very sensitive to salt stress since the dry weight was ca. one fourth that of the plants grown without salinity. However, EI or BOA4 plus EI stimulated plant biomass by ca. 3 times compared to the control with salt, restoring plant biomass to values comparable to those of control plants grown without salinity. The joint treatments with BOA4 and EI or OFI caused distinct PR/GA levels in plant tissues. An inverse relationship between the sum of relative shoot proline and glutamic acid contents and shoot biomass accumulation was observed, namely in treatments accumulating more biomass under no salinity and salinity conditions. This indicates that the proline/glutamate pathway represents a carbon sink that is needed to fight stress and is competing with the carbon flow used for growth.

Solanum lycopersicum is a vegetable with a high mineral, nutraceutical, and vitamin content. It is a basic ingredient in the human diet, and its use is diverse within the kitchen. Grafting and Ca, K, and Mg applications can be used to increase production and raise the mineral contents of tomato fruit. An experiment was established with tomato plants using the “CID F1” variety with the “FORTAMINO” rootstock, established in the NFT system, determining the influence on the agronomic yield and mineral composition of the fruit. Grafted and non-grafted plants were considered, with five concentrations (0-0-0, 9-0-0, 0-12-0, 0-0-9, and 9-12-9 mEq L−1) of Ca, K, and Mg, respectively. A highly significant difference was obtained in the grafted plants on high plants, number of leaves, number of fruits, polar diameters of fruits, equatorial diameters of fruits, and weight of fruits, with an increase in variables, FW 19% and NF 18%, and an improvement for the mineral composition in elements such as Ca 10%, P 1%, Mn 6%, Zn 7%, Cu 6%, Fe 64%, K 21%, and Mg 19%. The 9-12-9 meq formula improved Ca 6%, P 4%, Mn 12%, Zn 14%, Cu 8%, Fe 74%, and Mg 25%. The graft and the addition of calcium, potassium, and magnesium increased the mineral content in tomato fruits and improved the agronomic performance of the plants.

We assessed the emergence, growth, phenotypic plasticity and quality of both landrace and commercial tomato fruits under conditions of elevated temperature and increased CO2 concentrations [CO2]. Four growth chambers were used in which temperature and [CO2] differed: LTLC (30 °C, 400 µmol CO2 mol−1), LTHC (30 °C, 1200 µmol CO2 mol−1), HTLC (40 °C, 400 µmol CO2 mol−1) and HTHC (40 °C, 1200 µmol CO2 mol−1). The acronyms indicate the following: LT, low temperature; HT, high temperature; LC, low [CO2]; and HC, high [CO2]. Elevated temperatures significantly affected emergence in both genotypes, with the rate decreasing below 35% at HT compared to over 95% at LT. At HT, seedlings died before producing true leaves. This increase in temperature negatively affected plant growth, though HC produced some compensatory growth promotion. Regarding HT and CO2 interactions, HC failed to counteract the negative impacts of HT. The commercial variety showed a higher relative distance plasticity index (RDPI) under HT, whereas the landrace showed greater plasticity in plant height under HC. The largest fruit sizes were observed at LT, whereas no fruits were found at HTLC. Elevated temperature at HC resulted in enhanced total phenol content and increased antioxidant activity in the fruits.

Aquaculture and agriculture integration is essential for maximizing water and land productivity in arid and semi-arid regions. Thus, the increase in global water scarcity and the dual use of water for crop and fish production has the potential to optimize water use, dispose of aquaculture wastes, provide additional nutrients to crops, and reduce inorganic fertilizer usage, thus maximizing farm productivity. This greenhouse study was conducted to determine the effects of fish effluents on the growth, yield parameters, and yield of tomatoes (Solanum lycopersicum L.). The experiment was carried out in a randomized complete block design with six replications. The 13 treatments consisted of three irrigation water types (river water—control, Nile tilapia—Oreochromis niloticus, African sharptooth catfish—Clarias gariepinus), four fertilizers (chicken manure, cow manure, sheep manure; recommended rate of NPK—280 kg ha−1 of 10-10-20), and six mixed treatments with fish effluent and 50% of the applied rate of manure alone. Results showed that irrigation with C. gariepinus effluent increased the stem diameter by 21%, the number of flowers by 88%, the fruit number by 50%, the fruit diameter by 24%, the mean fruit weight by 34%, and total fruit weight of tomato by 96% compared to NPK treatments. These effects were more evident when C. gariepinus was mixed with poultry, cow, and sheep manures, which resulted in significantly greater values than recommended rates of NPK. The higher productivity observed from the combined use of C. gariepinus and manure treatments (133% increase, on average) compared to NPK treatments was related to the continuous supply of nutrients and the increase of yield parameters. Therefore, the combined use of C. gariepinus effluent and manure can be a viable alternative for smallholder farmers, for whom inorganic fertilizers are often neither affordable nor available.

Late blight, caused by the oomycete Phytophthora infestans, is one of the most important diseases affecting tomato and potato production worldwide. In Thailand, the disease is widespread in the north and northeast, especially in the Chiang-Mai and Tak provinces. The mating type, metalaxyl sensitivity, mitochondrial DNA (mtDNA) haplotype, RG57 fingerprinting, and microsatellite were used to characterize the P. infestans populations. The study revealed that the P. infestans of tomato isolates in Thailand are of the same lineage as those from 1994 until 2002. The clonal lineages that were found in the potato populations have changed since 1994. The changes in P. infestans isolates in the potato populations have likely been the result of the import of seed potatoes to Thailand. Furthermore, the P. infestans populations in potatoes show resistance to metalaxyl, whereas those from tomato isolates show sensitivity to fungicides. The reasons for the different responses can be attributed to (i) the use of metalaxyl, (ii) the host preferences of P. infestans, and (iii) the migration of new genotypes from infected potato seeds.

Drought is one of the major abiotic stresses that affect plant growth and productivity, and plant stress responses are affected by both the intensity of stress and genotype. In Iraqi Kurdistan, tomato plants play a significant role in the country's economy. Due to climate change, which causes soil moisture to diminish, the crop's growth and yield have been dropping in recent years. Accordingly, the effects of simulated drought stress on germination parameters were assessed in 64 tomato accessions gathered from the Iraqi Kurdistan region in order to identify sensitive and tolerant accessions. In this respect, the responses associated with drought stress were observed phenotypically and biochemically. Germination percentage (GP) and morphological characteristics such as root length (RL), shoot length (SL), and shoot fresh weight (SFW) were significantly reduced in both stress treatments with polyethylene glycol (PEG-6000) (7.5% PEG and 15% PEG). On the other hand, significant changes in biochemical profiles such as proline content (PC), soluble sugar content (SSC), total phenolic content (TPC), antioxidant activity (AC), guaiacol peroxidase (GPA), catalase (CAT), and lipid peroxidation (LP) in tomato accessions were detected; all biochemical traits were increased in most tomato accessions under the PEG-induced treatments compared to the control treatment (0.0% PEG). Three tomato accessions (AC61 (Raza Pashayi), AC9 (Wrdi Be Tow), and AC63 (Sandra)) were found to be the most tolerant accessions under all drought conditions, whereas the performances of the other tested accessions (AC13 (Braw), AC30 (Yadgar), and AC8 (Israili)) were inferior. The OMIC analysis identified the biomarker parameters for differentiating the highly, moderately, and low tolerant groups as PC, SSC, and TPC. This study shows that early PEG-6000 screening for drought stress may help in choosing a genotype that is suitable for growth in water-stressed environments. Hence, Raza Pashayi, Wrdi Be Tow, and Sandra accessions, which had great performances under drought conditions, can be candidates for selection in a breeding program to improve the growth of plants and production in the areas that face water limits.

Diseases caused by begomoviruses such as tomato yellow leaf curl disease (TYLCD) are major constraints in agriculture. While the interactions between plants and monopartite begomoviruses during TYLCD pathogenesis have been explored extensively, how bipartite begomoviruses interact with tomato plants are understudied. Here we first found that a bipartite begomovirus tomato yellow leaf curl Thailand virus (TYLCTHV) induced stunted growth, leaf curl and yellowing in tomato plants. We then profiled the tomato transcriptomic changes in response to TYLCTHV infection. In total, we identified 2322 upregulated and 1377 downregulated genes. KEGG enrichment analysis of the differentially expressed genes (DEGs) revealed that many KEGG pathways regulating plant photosynthesis processes and defenses were enriched. Specifically, TYLCTHV infection disrupted the expression of DEGs that function in the light-harvesting chlorophyll protein complex, photosystem I and II, cytochrome b6/f complex, photosynthetic electron transport and F-type ATPase. Additionally, the expression of many DEGs regulating plant defenses including pathogen-associated molecular pattern (PAMP)-triggered immunity, effector-triggered immunity and hypersensitive response was upregulated upon TYLCTHV infection. Taken together, we found that during the pathogenesis of TYLCD induced by TYLCTHV, the virus actively disrupts plant photosynthesis processes and induces defense responses. Our findings add to our knowledge of TYLCD pathogenesis and plant-virus interactions in general.

Background: Phytotherapeutic agents aroused an increasing interest either as alternative or in addition to conventional therapy in the management of BPH. The aim of the article was to evaluate the clinical and functional changes after add-on treatment with Serenoa repens associated with Solanum lycopersicum, lycopene and bromelain in patients with BPH presenting with mild to moderate LUTS and previously treated only with Alfuzosin over a 6–12 months period. Materials and methods: Between January and July 2019, patients with symptomatic BPH already on treatment with Alfuzosin (Al) 10 mg for at least 6–12-month were enrolled at three academic referral centres, included in a prospective treatment group, and managed with a combination treatment of Al and 6-month daily oral single-tablet supplementation of Serenoa repens and Solanum lycopersicum + lycopene + bromelain (SeR + SL + Ly + Br). A retrospective control group with comparable baseline characteristics was obtained by performing a propensity score matching from a database of 434 patients managed with Alfuzosin 10 mg/day only over a 6–12 months period between March 2015 and December 2018. IPSS, QoL questionnaires, voiding diary assessment, postvoid residual volume (PVR), maximal (Qmax) and average (Qave) urinary flow rates were evaluated at baseline in the treatment group at the moment of patient accrual, in the control group after 6-month of treatment with alfuzosin, and thereafter at 3 and 6 months in both groups. Results: Overall, 250 patients entered the study (n = 125 treatment group; n = 125 control group). Total IPSS score significantly decreased at 6-month assessment from baseline in the treatment vs control group (17 [IQR: 12–20] vs 12 [IQR: 9–14], p = 0.02) with a significative storage symptoms improvement detected both at 3- (p = 0.03) and 6-month evaluation (p = 0.001). PVR significantly improved at each follow-up visit with the most relevant reduction at 6-month assessment (125 cc vs. 102 cc; p = 0.02). Moreover, a significative improvement in LUTS-related quality of life (QoL) was recorded at 3- and 6-month assessment with a median decrease of −1 and −2 (p = 0.05 and p = 0.001 respectively) from baseline. Conclusions: Combination treatment with AB and SeR + SL + Ly + Br led to meaningful improvements in LUTS severity compared to AB as monotherapy, after a 6-month treatment period in men with mild to moderate LUTS/BPH.