Search

Autism spectrum disorder (ASD) is a common condition with lifelong implications. The last decade has seen dramatic improvements in DNA sequencing and related bioinformatics and databases. We analyzed the raw DNA sequencing files on the Variantyx® bioinformatics platform for the last 50 ASD patients evaluated with trio whole-genome sequencing (trio-WGS). “Qualified” variants were defined as coding, rare, and evolutionarily conserved. Primary Diagnostic Variants (PDV), additionally, were present in genes directly linked to ASD and matched clinical correlation. A PDV was identified in 34/50 (68%) of cases, including 25 (50%) cases with heterozygous de novo and 10 (20%) with inherited variants. De novo variants in genes directly associated with ASD were far more likely to be Qualifying than non-Qualifying versus a control group of genes (p = 0.0002), validating that most are indeed disease related. Sequence reanalysis increased diagnostic yield from 28% to 68%, mostly through inclusion of de novo PDVs in genes not yet reported as ASD associated. Thirty-three subjects (66%) had treatment recommendation(s) based on DNA analyses. Our results demonstrate a high yield of trio-WGS for revealing molecular diagnoses in ASD, which is greatly enhanced by reanalyzing DNA sequencing files. In contrast to previous reports, de novo variants dominate the findings, mostly representing novel conditions. This has implications to the cause and rising prevalence of autism.

The Haifa Bay area (HBA) is a major metropolitan area in Israel, which consists of high volume transportation routes, major industrial complexes, and the largest international seaport in Israel. These, which lie relatively near densely populated residential areas, result in a multitude of air pollution sources, many of whose emissions are in the form of particulate matter (PM). Previous studies have associated exposure to such PM with adverse health effects. This potential consequence serves as the motivation for this study whose aim is to provide a realistic and detailed three-dimensional concentration field of PM, originating simultaneously from multiple sources. The IIBR in-house Lagrangian stochastic pollutant dispersion model (LSM) is suitable for this endeavor, as it describes the dispersion of a scalar by solving the velocity fluctuations in high Reynolds number flows. Moreover, the LSM was validated in urban field experiments, including in the HBA. However, due to the fact that the multiple urban sources reside within the canopy layer, it was necessary to integrate into the LSM a realistic canopy layer model that depicts the actual effect of the roughness elements’ drag on the flow and turbulent exchange of the urban morphology. This was achieved by an approach which treats the canopy as patches of porous media. The LSM was used to calculate the three-dimensional fields of PM10 and PM2.5 concentrations during the typical conditions of the two workday rush-hour periods. These were compared to three air quality monitoring stations located downstream of the PM sources in the HBA. The LSM predictions for PM2.5 satisfy all acceptance criteria. Regarding the PM10 predictions, the LSM results comply with three out of four acceptance criteria. The analysis of the calculated concentration fields has shown that the PM concentrations up to 105 m AGL exhibit a spatial pattern similar to the ground level. However, it decreases by a factor of two at 45 m AGL, while, at 105 m, the concentration values are close to the background concentrations.

Lockdown policies have been implemented worldwide to limit the spread of COVID-19. “Lockdown fatigue” is a state of exhaustion related to the accumulating effects of repeated lockdowns. The aim of the current study was to examine the effects of repeated lockdowns on children with respiratory disorders. Data on children aged 0–18 years old with respiratory disorders were collected by an electronic survey during the third lockdown in Israel. The retrieved information included demographics and baseline medical status, respiratory clinical status during the third lockdown compared to pre-lockdown periods, lockdown adherence, lifestyle modifications and caregiver emotional status. The results were compared to those of a similar questionnaire distributed during the first lockdown. A total of 234 patients (62% males, 37% females, mean age 6.8 years (confidence interval 6.1–7.5)) were enrolled. Respiratory symptoms and exacerbation frequency were reduced in 76 (35.5%) and 58 (27.4%) patients, respectively, compared to the pre-lockdown period and similar to the first lockdown (p = 0.840 and p = 0.063, respectively). However, compared to the first lockdown, the third lockdown was associated with greater use of reliever medications (p = 0.006), less use of inhaled corticosteroids as routine treatment (p = 0.027), and more pediatric emergency room visits and hospitalizations (p = 0.001 and p < 0.001, respectively). The results also showed an increase in sedentary lifestyle (e.g., reduced physical activity (p = 0.025), less healthy eating habits (p = 0.001)) and reduced adherence to lockdown policies (p < 0.001). These data show that the continuing stability of clinical improvement during lockdown was accompanied by deleterious sequelae that potentially indicate “lockdown fatigue” among children with respiratory disorders.

Insect flight is a complex interdisciplinary phenomenon. Understanding its multiple aspects, such as flight control, sensory integration, physiology and genetics, often requires the analysis of large amounts of free flight kinematic data. Yet, one of the main bottlenecks in this field is automatically and accurately extracting such data from multi-view videos. Here, we present a model-based method for the pose estimation of free-flying fruit flies from multi-view high-speed videos. To obtain a faithful representation of the fly with minimum free parameters, our method uses a 3D model that includes two new aspects of wing deformation: A non-fixed wing hinge and a twisting wing surface. The method is demonstrated for free and perturbed flight. Our method does not use prior assumptions on the kinematics apart from the continuity of the wing pitch angle. Hence, this method can be readily adjusted for other insect species.

The genus Halodiplosis includes 99 species restricted to host-plants of the Amaranthaceae, virtually all of which are from Central Asia. The discovery of numerous undescribed species putatively belonging to this genus in Israel instigated an exhaustive review of the original descriptions of all known species in this genus. This study revealed that the generic concept of Halodiplosis and some of the genera synonymized under it should be redefined based on morphological and life-history attributes, such that Halodiplosis is limited to only 13 species developing in plant tissues without obvious gall formation or as inquilines in galls of other cecidomyiids. Revised status were proposed for Asiodiplosis, Onodiplosis, and Desertomyia, all species of which are gall inducers. A detailed morphological study of the Israeli species combined with data on their life history and an analysis of mitochondrial COI and 16S gene sequences revealed nine gall-inducing species belonging to Asiodiplosis and one inquilinous species belonging to Halodiplosis. All ten species (Asiodiplosis admirabilis n.sp., A. bimoda n.sp., A. delicatula n.sp., A. largifica n.sp., A. mohicana n.sp., A. mucronata n.sp., A. paradoxa n.sp., A. pillosaeconspicua n.sp., A. stellata n.sp., and Halodiplosis fugax n.sp.) are described here as new to science, including the first descriptions of larvae and pupae for these genera.

The accumulated particulate matter concentration at a given vertical column due to traffic sources in urban area has many important consequences. This task, however, imposes a major challenge, since the problem of realistic pollutant dispersion in an urban environment is a very demanding task, both theoretically and computationally. This is mainly due to the highly inhomogeneous three dimensional turbulent flow regime in the urban canopy roughness sublayer, which is far from “local equilibrium” between shear production and dissipation. We present here a mass-consistent urban Lagrangian stochastic model for pollutants dispersion, where the flow field is modeled using a hybrid approach by which we model the surface layer based on the typical turbulent scales, both of the canopy and in the surface layer inertial sub-layer. In particular it relies on representing the canopy aerodynamically as a porous medium by spatial averaging the equations of motion, with the assumption that the canopy is laterally uniform on a scale much larger than the buildings but smaller than the urban block/neighbourhood, i.e., at the sub-urban-block scale. Choosing the spatial representative averaging volume allows the averaged variables to reflect the characteristic vertical heterogeneity of the canopy but to smooth out smaller scale spatial fluctuations caused as air flows in between the buildings. This modeling approach serves as the base for a realistic and efficient methodology for the calculation of the accumulated concentration from multiple traffic sources for any vertical column in the urban area. The existence of multiple traffic sources impose further difficulty since the computational effort required is very demanding for practical uses. Therefore, footprint analysis screening was introduced to identify the relevant part of the urban area which contributes to the chosen column. All the traffic sources in this footprint area where merged into several areal sources, further used for the evaluation of the concentration profile. This methodology was implemented for four cases in the Tel Aviv metropolitan area based on several selected summer climatological scenarios. We present different typical behaviors, demonstrating combination of source structure, urban morphology, flow characteristics, and the resultant dispersion pattern in each case.

The present study evaluated the effects of dietary supplementation of spirulina on laying hens' performances: Eggs' physical, chemical, and sensorial qualities. A total of 45 Lohman White hens, 44 weeks of age, were randomized into 3 groups of 15 birds. Hens were given 120 g/d of a basal diet containing 0% (control), 1.5%, and 2.5% of spirulina for 6 weeks. Albumen height and consequently Haugh unit were significantly affected by dietary supplementation of spirulina ( p < 0.05) and by weeks on diet ( p < 0.05). This supplement did not affect ( p > 0.05) egg yolk weight or height. However, spirulina increased egg yolk redness (a*) from 1.33 (C) to 12.67 (D1) and 16.19 (D2) and reduced ( p < 0.05) the yellowness (b*) parameter from 62.1(C) to 58.17 (D1) and 55.87 (D2). Egg yolks from hens fed spirulina were darker, more red, and less yellow in color than egg yolks from hens fed the control-diet ( p < 0.0001). However, spirulina did not affect ( p > 0.05) egg yolks' total cholesterol concentration. In conclusion, a significant enhancement of egg yolk color was found in response to spirulina supplementation. Further investigations are needed to evaluate the impact of spirulina on egg yolks' fatty acids profile., Competing Interests: The authors declare no conflict of interest.

This study evaluated the effect of dietary incorporation of linseed alone or along with dried tomato paste-pepper powder mix on egg physical characteristics, antioxidant profiles, lipid oxidative status, and yolk coloration before and after storage at 4 °C for one month. Sixty Novogen White laying hens, 27 weeks-old, were divided into three groups and given 100 g/hen/day of a standard diet (C), standard diet containing 4.5% of ground linseed (L), linseed diet containing 1% of dried tomato paste and 1% of sweet red pepper (LTP). Linseeds increased ( p < 0.05) egg yolk antioxidant capacity but not lipid oxidative stability ( p > 0.05). However, dietary inclusion of LTP did not improve fresh egg yolk antioxidant activity and lipid oxidation stability ( p > 0.05). With reference to the stored eggs, only antioxidant activity measured by phosphomolybdenum reduction and lipid oxidative stability were influenced ( p < 0.05) by the dietary treatment. Fresh egg yolk of hens fed on linseeds tended to have a slightly more yellow, redder, and less light color than the eggs of hens fed with the control diet. Dietary supplementation of LTP increased ( p < 0.05) the Roche yolk color fan (RYCF) score and redness (a*) and decreased ( p < 0.05) lightness (L*) without affecting ( p > 0.05) saturation (C*). Storage of hens' eggs fed on the control diet did not influence ( p > 0.05) yolk color.

Several investigations have suggested that fenugreek seeds may have a hypocholesterolemic activity, and thus be efficient in the treatment of egg yolk cholesterol. The objective of the current study was to evaluate the effect of dietary incorporation of 3% of fenugreek seed combined with 3% of linseed, 1% of garlic paste, and 0.078% of copper sulfate on laying performance, egg quality and lipids profile. Forty four, 41 weeks old, Novogen White laying hens received for 42 days 100 g/d of basal diet (control) or experimental diet (CFSGLSCS). With the exception of egg weight, which showed a significant increase for hens fed on CFSGLSCS with 57.99 g compared to 56.34 g for the control group, egg production (90.84% for control compared to 87.89% for experimental diet), egg mass (50.95 g/d for control compared to 50.87 g/d for CFSGLSCS), feed efficiency (1.94 for control compared to 1.98 for CFSGLSCS) were not affected by dietary treatments. The addition of CFSGLSCS reduced ( p < 0.05) egg yolk cholesterol by 5.4% and blood cholesterol from 158.42 mg/dL to 122.82 mg/dL for control and CFSGLSCS, respectively. The dietary addition of CFSGLSCS increased ( p < 0.05) total lipids from 4.5 g/egg to 5.23 g/egg and didn't affect ( p > 0.05) yolk triglycerides.