19 results on '"Ning, Yao"'
Search Results
2. An Improved Bi-LSTM-Based Missing Value Imputation Approach for Pregnancy Examination Data
- Author
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Xinxi Lu, Lijuan Yuan, Ruifeng Li, Zhihuan Xing, Ning Yao, and Yichun Yu
- Subjects
hypertensive disorder in pregnancy ,female healthcare ,machine learning ,bi-LSTM ,disease prediction ,data imputation ,Industrial engineering. Management engineering ,T55.4-60.8 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
In recent years, the development of computer technology has promoted the informatization and intelligentization of hospital management systems and thus produced a large amount of medical data. These medical data are valuable resources for research. We can obtain inducers and unknown symptoms that can help discover diseases and make earlier diagnoses. Hypertensive disorder in pregnancy (HDP) is a common obstetric complication in pregnant women, which has severe adverse effects on the life safety of pregnant women and fetuses. However, the early and mid-term symptoms of HDP are not obvious, and there is no effective solution for it except for terminating the pregnancy. Therefore, detecting and preventing HDP is of great importance. This study aims at the preprocessing of pregnancy examination data, which serves as a part of HDP prediction. We found that the problem of missing data has a large impact on HDP prediction. Unlike general data, pregnancy examination data have high dimension and a high missing rate, are in a time series, and often have many non-linear relations. Current methods are not able to process the data effectively. To this end, we propose an improved bi-LSTM-based missing value imputation approach. It combines traditional machine learning and bidirectional LSTM to deal with missing data of pregnancy examination data. Our missing value imputation method obtains a good effect and improves the accuracy of the later prediction of HDP using examination data.
- Published
- 2022
- Full Text
- View/download PDF
3. Age- and Sex-Dependent Behavioral and Neurochemical Alterations in hLRRK2-G2019S BAC Mice
- Author
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Ning Yao, Olga Skiteva, and Karima Chergui
- Subjects
BAC: bacterial artificial chromosome ,DA: dopaminergic ,DAT: dopamine transporter ,KI: knock-in ,LRRK2: leucine-rich repeat kinase 2 ,PD: Parkinson’s disease ,Microbiology ,QR1-502 - Abstract
The G2019S mutation in the leucine-rich repeat kinase 2 (LRRK2) gene is associated with late-onset Parkinson’s disease (PD). Although PD affects men and women differently, longitudinal studies examining sex- and age-dependent alterations in mice carrying the G2019S mutation are limited. We examined if behavioral and neurochemical dysfunctions, as well as neurodegeneration, occur in male and female BAC LRRK2-hG2019S (G2019S) mice, compared to their age-matched wild type littermates, at four age ranges. In the open field test, hyperlocomotion was observed in 10–12 month old male and 2–4.5 months old female G2019S mice. In the pole test, motor coordination was impaired in male G2019S mice from 15 months of age and in 20–21 months old female G2019S mice. In the striatum of G2019S male and female mice, the amounts of tyrosine hydroxylase (TH), measured with Western blotting, were unaltered. However, we found a decreased expression of the dopamine transporter in 20–21 month old male G2019S mice. The number of TH-positive neurons in the substantia nigra compacta was unaltered in 20–21 month old male and female G2019S mice. These results identify sex- and age-dependent differences in the occurrence of motor and neurochemical deficits in BAC LRRK2-hG2019S mice, and no degeneration of DA neurons.
- Published
- 2022
- Full Text
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4. Anastomotic Rings and Inflammation Values as Biomarkers for Leakage of Stapled Circular Colorectal Anastomoses
- Author
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Feng Zhang, Song Qiao, Ning Yao, Chunqiao Li, Marie-Christin Weber, Benedict Jefferies, Helmut Friess, Stefan Reischl, and Philipp-Alexander Neumann
- Subjects
anastomotic ring ,colorectal anastomosis ,anastomotic leakage ,neutrophil to lymphocyte ratio ,stapler anastomosis ,Medicine (General) ,R5-920 - Abstract
Reliable markers to predict or diagnose anastomotic leakage (AL) of stapled circular anastomoses following colorectal resections are an important clinical need. Here, we aim to quantitatively investigate the morphology of anastomotic rings as an early available prognostic marker for AL and compare them to established inflammatory markers. We perform a prospective single-center cohort study, including patients undergoing stapled circular anastomosis between August 2020 and August 2021. The predictive value of the anastomotic ring configuration and the neutrophil-to-lymphocyte ratio (NLR) regarding anastomotic leakage is examined by ROC analyses and compared to the C-reactive protein (CRP) as an established marker. We included 204 patients, of which 19 suffered from anastomotic leakage (LEAK group), while in 185 patients the anastomoses healed well (HEAL group). The minimal height of the anastomotic rings as a binary classifier had a good ROC-AUC of 0.81 but was inferior to the NLR at postoperative day (POD) 5, with an excellent ROC-AUC of 0.93. Still, it was superior to the NLR at POD 3 (0.74) and the CRP at POD 3 (ROC-AUC 0.54) and 5 (ROC-AUC 0.70). The minimal height of the anastomotic rings as indicator for technically insufficient anastomoses is a good predictor of AL, while postoperatively the NLR was superior to the CRP in prediction of AL.
- Published
- 2022
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5. Better Performance of the Modified CERES-Wheat Model in Simulating Evapotranspiration and Wheat Growth under Water Stress Conditions
- Author
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Yingnan Wei, Han Ru, Xiaolan Leng, Zhijian He, Olusola O. Ayantobo, Tehseen Javed, and Ning Yao
- Subjects
evapotranspiration ,dynamic crop coefficient ,water stress ,CERES-Wheat ,winter wheat ,Agriculture (General) ,S1-972 - Abstract
Crop models are important for understanding and regulating agroecosystems. Although the CERES-Wheat model is an important tool for winter wheat research, it has some limitations under water stress conditions. To narrow the gap, this study aimed to improve the performance of the CERES-Wheat model under water stress in arid and semi-arid regions based on the winter wheat experimental data from 2012 to 2014. The Priestley–Taylor (PT) and FAO56 Penman–Monteith (PM) equations were used to calculate the reference crop evapotranspiration and further modified the crop coefficient of the CERES wheat model to improve the simulation accuracy of crop yield and evapotranspiration under water stress conditions. The results showed that: water stress before jointing seriously affected the accuracy of the CERES-Wheat model in simulating biomass and grain yield, so it was necessary to improve the original model. In the original and improved models, the accuracy of the PM equation was lower than that of PT. In addition, the simulation accuracy of the improved model was higher than that of the original model (the average RMAE and RRMSE are less than 30%). In general, among the four scenarios, the PT equation for calculating crop reference evapotranspiration and crop coefficient had the best performance. Water stress occurred at the heading and grain filling stages, and the simulated biomass was in good agreement with the observed results, which better simulated the soil water content under water stress at the later growth stages. Therefore, the change in water stress response function had positive effects on winter wheat growth under simulated water stress conditions. This study provided a reference for applying the CERES-Wheat model in arid and semi-arid areas.
- Published
- 2022
- Full Text
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6. Better Drought Index between SPEI and SMDI and the Key Parameters in Denoting Drought Impacts on Spring Wheat Yields in Qinghai, China
- Author
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Miaolei Hou, Ning Yao, Yi Li, Fenggui Liu, Asim Biswas, Alim Pulatov, and Ishtiaq Hassan
- Subjects
soil moisture deficit index ,standardized precipitation evapotranspiration index ,Pearson correlation ,DSSAT–CERES–wheat model ,spring wheat ,Agriculture - Abstract
Drought has great negative impacts on crop growth and production. In order to select appropriate drought indices to quantify drought influences on crops to minimize the risk of drought-related crops as much as possible, climate and spring wheat yield-related data from eight sites in the Qinghai Province of China were collected for selecting better drought index between standardized precipitation evapotranspiration index (SPEI, denoting meteorological drought) and soil moisture deficit index (SMDI, denoting agricultural drought) as well as the key parameters (timescale and month) in denoting drought impacts on spring wheat yields. The spring wheat yields during 1961–2018 were simulated by the DSSAT–CERES–Wheat model. Pearson correlations were used to investigate the relationship between SPEI and SMDI and between spring wheat yields and drought indices at different timescales. The results showed that: (1) SMDI reflected more consistent dry/wet conditions than SPEI when the timescales changed and (2) There were one- and two-month lags in SMDI compared to SPEI (with the higher correlation coefficients values of 0.35–0.68) during May to August and (3) May (the jointing period of spring wheat) and the two-month timescale of SMDI0–10 (with the higher correlation coefficients values of 0.21–0.37) were key parameters denoting drought influences on spring wheat yield and (4) The correlations between the linear slopes of spring wheat yield reduction rate and linear slopes of SMDI0–10 in May at the studied eight sites were considerable between 1961–2018 (r = 0.85). This study provides helpful references for mitigating the drought risk of spring wheat.
- Published
- 2022
- Full Text
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7. Spatiotemporal Characteristics of Dryness/Wetness in the Wine Regions of China from 1981 to 2015
- Author
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Xiaojuan Yang, Ning Yao, Wei Hu, Xingjie Ji, Qingzu Luan, Yuan Liu, Wei Bai, Di Chen, and Buchun Liu
- Subjects
China ,wine region ,SPEI ,drought ,wet ,climatic factors ,Agriculture - Abstract
China has a marked continental monsoon climate characterized by dry and wet hazards that have destructive impacts on grape yields and quality. The purpose of this study was to analyze the spatiotemporal characteristics of dryness/wetness in the wine regions of China and explore the links between these variations and large-scale climatic factors. The crop-specific standardized precipitation evapotranspiration index (SPEI) was used to characterize the dryness/wetness using meteorological data collected at 168 meteorological stations located in or near the wine regions from 1981–2015. Results showed that most wine regions of China experienced a wetting trend. The drought and wet event characteristics were region- and site-specific. The main wine regions of China (e.g., Xinjiang, Helan Mountain and Hexi Corridor) were characterized by relatively high drought severity; the extreme drought frequencies of the three regions were higher as well (11.5%, 3.3%, and 3.6%, respectively). Xinjiang was also characterized by a high wetness severity and an extremely high wetness frequency of 16%, but the wetness severity decreased over time. A 4–6-year periodical oscillation was commonly detected over the wine regions. The dryness/wetness characteristics were highly associated with the Southern Oscillation Index, Niño 3.4 and the Indian Ocean Dipole, with highest correlation coefficients of −0.40, 0.36 and 0.43 at lag times of 11, 8, and 11 months, respectively. The serious dry and wet events that occurred in 2001 and 1998, respectively, were speculated to be associated with anomalous atmospheric circulation patterns. These results can be used to inform grapevine stakeholders at various levels (e.g., farmer and industry) for developing strategies to mitigate and adapt dryness/wetness events in the wine regions of China. It is expected that the approach proposed in this study can also be applicable to wine regions of other countries.
- Published
- 2022
- Full Text
- View/download PDF
8. Optimizing Sowing Date and Planting Density Can Mitigate the Impacts of Future Climate on Maize Yield: A Case Study in the Guanzhong Plain of China
- Author
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Fang Xu, Bin Wang, Chuan He, De Li Liu, Puyu Feng, Ning Yao, Renhe Zhang, Shutu Xu, Jiquan Xue, Hao Feng, Qiang Yu, and Jianqiang He
- Subjects
potential yield ,rain-fed yield ,APSIM-Maize model ,climate change ,GCMs ,Agriculture - Abstract
We used the APSIM-Maize model to simulate maize potential yield (Yp) and rain-fed yield (Yw) when adaptation options of sowing date and planting density were adopted under Representative Concentration Pathway (RCP) 4.5 and 8.5 in the Guanzhong Plain of China. The results showed that Yp would decrease by 10.6–14.9% and 15.0–31.4% under RCP4.5 and RCP8.5 for summer maize, and 13.9–19.7% and 18.5–36.3% for spring maize, respectively. The Yw would decrease by 17.1–19.0% and 23.6–41.1% under RCP4.5 and RCP8.5 for summer maize, and 20.9–24.5% and 27.8–45.5% for spring maize, respectively. The loss of Yp and Yw could be reduced by 2.6–9.7% and 0–9.9%, respectively, under future climate for summer maize through countermeasures. For spring maize, the loss of Yp was mitigated by 14.0–25.0% and 2.0–21.8% for Yw. The contribution of changing sowing date and plant density on spring maize yield was more than summer maize, and the optimal adaptation options were more effective for spring maize. Additionally, the influences of changing sowing date and planting density on yields become weak as climate changes become more severe. Therefore, it is important to investigate the potential of other adaptation measures to cope with climate change in the Guanzhong Plain of China.
- Published
- 2021
- Full Text
- View/download PDF
9. Resilience Assessment of Beijing Subway Lines under Extreme Precipitation Weather
- Author
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Wei, Yun, primary, Liang, Jingyu, additional, Deng, Yongxin, additional, Dou, Fei, additional, Ning, Yao, additional, Zhou, Dong, additional, and Liu, Jie, additional
- Published
- 2023
- Full Text
- View/download PDF
10. National-Scale Variation and Propagation Characteristics of Meteorological, Agricultural, and Hydrological Droughts in China
- Author
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Ning Yao, Huichao Zhao, Yi Li, Asim Biswas, Hao Feng, Fenggui Liu, and Bakhtiyor Pulatov
- Subjects
drought type ,standardized drought index ,wavelet analysis ,trend ,lag ,Science - Abstract
The regional and national scales variation and propagation characteristics of different types of droughts are critical for improving drought resilience, while information is limited in China. The objective of this research was to investigate the evolution and propagation characteristics of three types of droughts using standardized indices at multi-timescales in different sub-regions of China. The indices included Standardized Precipitation/Soil Moisture/Runoff Index (SPI/SSI/SRI) using the optimal probability density function, representing meteorological, agricultural, and hydrological droughts based on precipitation, soil water storage, and baseflow-groundwater runoff, respectively. Wavelet analysis was used to reveal their periodical characteristics. Modified Mann-Kendall trend test was used to compare the trend among drought indices. Correlation coefficients between SPI and SSI/SRI were calculated to identify the time-lags of SPI with SSI and SRI. In general, droughts indicated by SPI agreed well with the historical drought events at different sub-regions. The main periods of SSI were closer to SPI than SRI, indicating stronger connections of agricultural drought with meteorological drought. A weaker connection between meteorological and agricultural/hydrological droughts at shorter timescales was observed in northwestern arid and semi-arid regions. The propagation from meteorological to agricultural or hydrological droughts were well denoted by the lagged time (months) from SPI to SSI or SRI at a timescale ranged from 0 (mostly located in south China) to 5 months (mostly located in northeastern China) for 1-, 3-, 6-, 12-, or 24-month timescale; this was a new finding for China. The methods of wavelet combining trend test and Pearson coefficient showed meaningful power for revealing the drought propagation characteristics and the obtained results can be a good reference for other regions of the world since this study compared different climate zones from arid to humid conditions. The study provides crucial information and guidance to develop drought management strategies at regional to national scale and their critical time of action.
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- 2020
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- View/download PDF
11. An Optimization Method of Urban Rail Train Operation Scheme Based on the Control of Load Factor
- Author
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Dou, Fei, primary, Zhang, Huiru, additional, Yin, Haodong, additional, Wei, Yun, additional, and Ning, Yao, additional
- Published
- 2022
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12. Forecasting Monthly Water Deficit Based on Multi-Variable Linear Regression and Random Forest Models
- Author
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Yi Li, Kangkang Wei, Ke Chen, Jianqiang He, Yong Zhao, Guang Yang, Ning Yao, Ben Niu, Bin Wang, Lei Wang, Puyu Feng, and Zhe Yang
- Subjects
monthly water deficit ,circulation indices ,random forest ,multi-variable linear regression ,northwestern China ,Geography, Planning and Development ,Aquatic Science ,Biochemistry ,Water Science and Technology - Abstract
Forecasting water deficit is challenging because it is modulated by uncertain climate, different environmental and anthropic factors, especially in arid and semi-arid northwestern China. The monthly water deficit index D at 44 sites in northwestern China over 1961−2020 were calculated. The key large-scale circulation indices related to D were screened using Pearson’s correlation (r). Subsequently, we predicted monthly D with the multi-variable linear regression (MLR) and random forest (RF) models at certain lagged times after being strictly calibrated and validated. The results showed the following: (1) The r between the monthly D and the screened key circulation indices varied from 0.71 to 0.85 and the lagged time ranged from 1 to 12 months. (2) The calibrated and validated performance of the established MLR and RF models were all good at the 44 sites. Overall, the RF model outperformed the MLR model with a higher coefficient of determination (R2 > 0.8 at 38 sites) and mean absolute percentage error (MAPE < 50% at 30 sites). (3) The Pacific Polar Vortex Intensity (PPVI) had the greatest impact on D in northwestern China, followed by SSRP, WPWPA, NANRP, and PPVA. (4) The forecasted monthly D values based on RF models indicated that the water deficit in northwestern China would be most severe (−239.7 to −62.3 mm) in August 2022. In conclusion, using multiple large-scale climate signals to drive a machine learning model is a promising method for predicting water deficit conditions in northwestern China.
- Published
- 2023
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13. A Rational Interpretation of the Role of Turbulence in Particle-Bubble Interactions
- Author
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Songying Chen, Xun Sun, Ning Yao, Yan Liu, Jingting Liu, and Guichao Wang
- Subjects
Physics ,Turbulence ,Bubble ,flotation ,Geology ,Mechanics ,Geotechnical Engineering and Engineering Geology ,Collision ,Mineralogy ,Changing equipment ,Interpretation (model theory) ,detachment ,Particle ,turbulence effects ,bubble-particle collision ,Froth flotation ,attachment ,QE351-399.2 - Abstract
Interactions between particles and bubbles have been cornerstone for the successful applications of froth flotation to the beneficiations of minerals or coal. Particle-bubble interactions are highly physio-chemical processes on the basis of surface science and hydrodynamics. Though these two aspects are deeply interwoven, we focus on the discussions of the effects of turbulence on the interactions between particles and bubbles, i.e., collision, attachment and detachment. It has to be mentioned this effect is not working in one direction and can affect flotation performance in a complicated way. Only when turbulence effects are well understood, flotation processes can be optimised by suitably changing equipment structure or operating parameters. The aim of this paper is to review the most recent progresses in this aspect and to identify the future development in successfully considering turbulence effects on flotation processes.
- Published
- 2021
14. Optimizing Sowing Date and Planting Density Can Mitigate the Impacts of Future Climate on Maize Yield: A Case Study in the Guanzhong Plain of China
- Author
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De Li Liu, Hao Feng, Chuan He, Bin Wang, Renhe Zhang, Ning Yao, Jiquan Xue, Fang Xu, Qiang Yu, Puyu Feng, Jianqiang He, and Shutu Xu
- Subjects
010504 meteorology & atmospheric sciences ,0502 Environmental Science and Management, 0703 Crop and Pasture Production ,Plant density ,rain-fed yield ,Sowing ,Climate change ,Agriculture ,04 agricultural and veterinary sciences ,Biology ,Future climate ,01 natural sciences ,climate change ,Agronomy ,Yield (wine) ,potential yield ,APSIM-Maize model ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,GCMs ,China ,Agronomy and Crop Science ,0105 earth and related environmental sciences - Abstract
We used the APSIM-Maize model to simulate maize potential yield (Yp) and rain-fed yield (Yw) when adaptation options of sowing date and planting density were adopted under Representative Concentration Pathway (RCP) 4.5 and 8.5 in the Guanzhong Plain of China. The results showed that Yp would decrease by 10.6–14.9% and 15.0–31.4% under RCP4.5 and RCP8.5 for summer maize, and 13.9–19.7% and 18.5–36.3% for spring maize, respectively. The Yw would decrease by 17.1–19.0% and 23.6–41.1% under RCP4.5 and RCP8.5 for summer maize, and 20.9–24.5% and 27.8–45.5% for spring maize, respectively. The loss of Yp and Yw could be reduced by 2.6–9.7% and 0–9.9%, respectively, under future climate for summer maize through countermeasures. For spring maize, the loss of Yp was mitigated by 14.0–25.0% and 2.0–21.8% for Yw. The contribution of changing sowing date and plant density on spring maize yield was more than summer maize, and the optimal adaptation options were more effective for spring maize. Additionally, the influences of changing sowing date and planting density on yields become weak as climate changes become more severe. Therefore, it is important to investigate the potential of other adaptation measures to cope with climate change in the Guanzhong Plain of China.
- Published
- 2021
15. Differences in Spatiotemporal Variability of Potential and Reference Crop Evapotranspirations
- Author
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Keyu Xiang, Xuan Zhang, Xiaofeng Peng, Ning Yao, Asim Biswas, Deli Liu, Yufeng Zou, Bakhtiyor Pulatov, Yi Li, and Fenggui Liu
- Subjects
potential evapotranspiration ,reference crop evapotranspiration ,R/S analysis ,wavelet analysis ,spatiotemporal variability ,Geography, Planning and Development ,Aquatic Science ,Biochemistry ,Water Science and Technology - Abstract
Potential evapotranspiration (ETp) and reference crop evapotranspiration (ETo) are two key parameters in hydrology, meteorology, and agronomy. ETp and ETo are related to each other but have different meanings and applications. In this study, the ETp and ETo were distinguished and calculated with the Penman and FAO56 PM equations using the weather data of 551 stations in China from 1961 to 2018. The differences in their spatiotemporal variations were examined with an MMK test, an R/S test, and wavelet analysis. The monthly ETp and ETo were close but the ETp was always larger than the ETo, with values ranging from 1 to 356 mm and 2 to 323 mm, respectively. Their differences varied in different months and sub-regions. The maximum monthly difference transferred from south to north and then back to the south in a yearly cycle, showing spatiotemporal heterogeneity. The annual values of the ETp and ETo were also close, but the ETp was significantly higher than the ETo. The increasing future trends of ETp but decreasing trends of ETo were tested at most sites in China. Although the primary periods were almost the same, their spatial distribution was slightly different. In conclusion, ETp is different from ETo and they should be applied carefully. This study performs a thorough comparison and reveals the underlying basis of and discrepancy between ETp and ETo.
- Published
- 2022
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16. Carbon Dots Derived from the Maillard Reaction for pH Sensors and Cr (VI) Detection
- Author
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Ma, Zhi, primary, Ma, Yun, additional, Gu, Meiyu, additional, Huo, Xiyue, additional, Ma, Sainan, additional, Lu, Yini, additional, Ning, Yao, additional, Zhang, Xuan, additional, Tian, Bo, additional, and Feng, Zhibiao, additional
- Published
- 2020
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17. The Cultivation Techniques and Quality Characteristics of a New Germplasm of Vitis adenoclada Hand.-Mazz Grape
- Author
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Ning Yao, Xie Linjun, Zhou Sihong, Wu Daidong, Guo Cheng, Zhang Jin, and Li Hongyan
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Germplasm ,media_common.quotation_subject ,Berry ,V. adenoclada Hand.-Mazz ,01 natural sciences ,Adaptability ,chemistry.chemical_compound ,0404 agricultural biotechnology ,cultivation techniques ,Sugar ,Quality characteristics ,media_common ,biology ,010401 analytical chemistry ,04 agricultural and veterinary sciences ,biology.organism_classification ,GH3 ,040401 food science ,quality characteristics ,0104 chemical sciences ,Horticulture ,chemistry ,Vitis adenoclada ,Vitis heyneana ,breeding ,Anthocyanin ,Agronomy and Crop Science - Abstract
Vitis adenoclada Hand.-Mazz is a special wild grape resource that is often confused with Vitis heyneana Roem. &, Schult in research or production practice, and there are few comprehensive studies on this species in recent years. &ldquo, Gui Heizhenzhu No. 3&rdquo, (GH3), as a new germplasm of V. adenoclada found in Guangxi, China, has many advantages, such as good quality and strong adaptability. In this paper, an attempt was made to introduce the breeding process of GH3, including a brief description of its botanical characteristics and its cultivation and management techniques in karst rocky desertification mountains. Meanwhile, its quality-related parameters were evaluated by widely targeted metabolomic analysis. This study indicated that GH3 had the typical botanical characteristics of V. adenoclada, but with larger fruit and a higher sugar content compared to wild or other V. adenoclada grape varieties. Metabolomic study of the target variety showed that glucose and citric acid were the main sugar and acid components in fully ripened berries. Moreover, cyanidin-3-O-glucoside presented as the characteristic anthocyanin. In addition, B-ring dihydroxylation was more active than trihydroxylation in the GH3 berry. Several of its botanical and quality characteristics highlight the unique genetic background of this variety. Thus, it has an important guiding significance and a scientific theoretical basis for identifying, exploiting, and utilizing East Asian wild grape resources.
- Published
- 2020
- Full Text
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18. Complete Chloroplast Genome Sequence and Phylogenetic Analysis of Quercus bawanglingensis Huang, Li et Xing, a Vulnerable Oak Tree in China
- Author
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Ya Wang, Ermei Chang, Ning Yao, Jianfeng Liu, Zeping Jiang, Yue-Ning Huang, and Xue Liu
- Subjects
0106 biological sciences ,Whole genome sequencing ,Trigonobalanus doichangensis ,0303 health sciences ,comparative analysis ,Phylogenetic tree ,chloroplast (cp) genome ,Inverted repeat ,Q. bawanglingensis ,interspecific relationships ,Forestry ,lcsh:QK900-989 ,Biology ,biology.organism_classification ,010603 evolutionary biology ,01 natural sciences ,Genome ,phylogenetics ,03 medical and health sciences ,Phylogenetics ,Evolutionary biology ,Lithocarpus ,Fagus engleriana ,lcsh:Plant ecology ,030304 developmental biology - Abstract
Quercus bawanglingensis Huang, Li et Xing, an endemic evergreen oak of the genus Quercus (Fagaceae) in China, is currently listed in the Red List of Chinese Plants as a vulnerable (VU) plant. No chloroplast (cp) genome information is currently available for Q. bawanglingensis, which would be essential for the establishment of guidelines for its conservation and breeding. In the present study, the cp genome of Q. bawanglingensis was sequenced and assembled into double-stranded circular DNA with a length of 161,394 bp. Two inverted repeats (IRs) with a total of 51,730 bp were identified, and the rest of the sequence was separated into two single-copy regions, namely, a large single-copy (LSC) region (90,628 bp) and a small single-copy (SSC) region (19,036 bp). The genome of Q. bawanglingensis contains 134 genes (86 protein-coding genes, 40 tRNAs and eight rRNAs). More forward (29) than inverted long repeats (21) are distributed in the cp genome. A simple sequence repeat (SSR) analysis showed that the genome contains 82 SSR loci, involving 84.15% A/T mononucleotides. Sequence comparisons among the nine complete cp genomes, including the genomes of Q. bawanglingensis, Q. tarokoensis Hayata (NC036370), Q. aliena var. acutiserrata Maxim. ex Wenz. (KU240009), Q. baronii Skan (KT963087), Q. aquifolioides Rehd. et Wils. (KX911971), Q. variabilis Bl. (KU240009), Fagus engleriana Seem. (KX852398), Lithocarpus balansae (Drake) A. Camus (KP299291) and Castanea mollissima Bl. (HQ336406), demonstrated that the diversity of SC regions was higher than that of IR regions, which might facilitate identification of the relationships within this extremely complex family. A phylogenetic analysis showed that Fagus engleriana and Trigonobalanus doichangensis form the basis of the produced evolutionary tree. Q. bawanglingensis and Q. tarokoensis, which belong to the group Ilex, share the closest relationship. The analysis of the cp genome of Q. bawanglingensis provides crucial genetic information for further studies of this vulnerable species and the taxonomy, phylogenetics and evolution of Quercus.
- Published
- 2019
- Full Text
- View/download PDF
19. Investigation into the Simulation and Mechanisms of Metal-Organic Framework Membrane for Natural Gas Dehydration.
- Author
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Song Q, Liu P, Zhang C, Ning Y, Pi X, and Zhang Y
- Abstract
Natural gas dehydration is a critical process in natural gas extraction and transportation, and the membrane separation method is the most suitable technology for gas dehydration. In this paper, based on molecular dynamics theory, we investigate the performance of a metal-organic composite membrane (ZIF-90 membrane) in natural gas dehydration. The paper elucidates the adsorption, diffusion, permeation, and separation mechanisms of water and methane with the ZIF-90 membrane, and clarifies the influence of temperature on gas separation. The results show that (1) the diffusion energy barrier and pore size are the primary factors in achieving the separation of water and methane. The diffusion energy barriers for the two molecules (CH
4 and H2 O) are ΔE(CH4 ) = 155.5 meV and ΔE(H2 O) = 50.1 meV, respectively. (2) The ZIF-90 is more selective of H2 O, which is mainly due to the strong interaction between the H2 O molecule and the polar functional groups (such as aldehyde groups) within the ZIF-90. (3) A higher temperature accelerates the gas separation process. The higher the temperature is, the faster the separation process is. (4) The pore radius is identified as the intrinsic mechanism enabling the separation of water and methane in ZIF-90 membranes.- Published
- 2024
- Full Text
- View/download PDF
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