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This research shows the results regarding the response to acidic condition of the sediment and Posidonia foraminiferal assemblages collected around the Panarea Island. The Aeolian Archipelago represents a natural laboratory and a much-promising study site for multidisciplinary marine research (carbon capture and storage, geochemistry of hydrothermal fluids and ocean acidification vs. benthic and pelagic organisms). The variability and the complexity of the interaction of the ecological factors characterizing extreme environments such as shallow hydrothermal vents did not allow us to carry out a real pattern of biota responses in situ, differently from those observed under controlled laboratory conditions. However, the study provides new insights into foraminiferal response to increasing ocean acidification (OA) in terms of biodiversity, faunal density, specific composition of the assemblages and morphological variations of the shells. The study highlights how the foraminiferal response to different pH conditions can change depending on different environmental conditions and microhabitats (sediments, Posidonia leaves and rhizomes). Indeed, mineral sediments were more impacted by acidification, whereas Posidonia microhabitats, thanks to their buffer effect, can offer “refugia” and more mitigated acidic environment. At species level, rosalinids and agglutinated group represent the most abundant taxa showing the most specific resilience and capability to face acidic conditions.