11 results on '"Francesco Bernardi"'
Search Results
2. Whole-Exome Sequencing in a Family with an Unexplained Tendency for Venous Thromboembolism: Multicomponent Prediction of Low-Frequency Variant Deleteriousness and of Individual Protein Interaction
- Author
-
Barbara Lunghi, Nicole Ziliotto, Dario Balestra, Lucrezia Rossi, Patrizia Della Valle, Pasquale Pignatelli, Mirko Pinotti, Armando D’Angelo, Giovanna Marchetti, and Francesco Bernardi
- Subjects
venous thromboembolism ,WES analysis ,family studies ,low-frequency variants ,protein interaction pattern ,CRP ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Whole-exome sequencing (WES) in families with an unexplained tendency for venous thromboembolism (VTE) may favor detection of low-frequency variants in genes with known contribution to hemostasis or associated with VTE-related phenotypes. WES analysis in six family members, three of whom affected by documented VTE, filtered for MAF < 0.04 in 192 candidate genes, revealed 22 heterozygous (16 missense and six synonymous) variants in patients. Functional prediction by multi-component bioinformatics tools, implemented by a database/literature search, including ClinVar annotation and QTL analysis, prioritized 12 missense variants, three of which (CRP Leu61Pro, F2 Asn514Lys and NQO1 Arg139Trp) were present in all patients, and the frequent functional variants FGB Arg478Lys and IL1A Ala114Ser. Combinations of prioritized variants in each patient were used to infer functional protein interactions. Different interaction patterns, supported by high-quality evidence, included eight proteins intertwined in the “acute phase” (CRP, F2, SERPINA1 and IL1A) and/or in the “fibrinogen complex” (CRP, F2, PLAT, THBS1, VWF and FGB) significantly enriched terms. In a wide group of candidate genes, this approach highlighted six low-frequency variants (CRP Leu61Pro, F2 Asn514Lys, SERPINA1 Arg63Cys, THBS1 Asp901Glu, VWF Arg1399His and PLAT Arg164Trp), five of which were top ranked for predicted deleteriousness, which in different combinations may contribute to disease susceptibility in members of this family.
- Published
- 2023
- Full Text
- View/download PDF
3. Correction: Bernardi et al. OH-Defects in Detrital Quartz Grains from the Julian Basin (NE Italy and Slovenia): A Fourier Transform Infrared Study. Geosciences 2022, 12, 90
- Author
-
Francesco Bernardi, Henrik Skogby, and Davide Lenaz
- Subjects
n/a ,Geology ,QE1-996.5 - Abstract
The authors would like to correct the published article [...]
- Published
- 2023
- Full Text
- View/download PDF
4. OH-Defects in Detrital Quartz Grains from the Julian Basin (NE Italy and Slovenia): A Fourier Transform Infrared Study
- Author
-
Francesco Bernardi, Henrik Skogby, and Davide Lenaz
- Subjects
detrital quartz ,OH-defects ,Julian Basin ,Italy ,Slovenia ,Geology ,QE1-996.5 - Abstract
In this study, we analyzed up to 80 detrital quartz grains from four lithic greywackes along the stratigraphic column of the Julian Basin, a synorogenic basin in the southeastern Alps between Italy and Slovenia. Fourier transform infrared spectroscopy of detrital quartz was used to investigate the sample set with interest to its OH-defect speciation and content of each associated substitution. According to several recent studies, OH-defects in quartz are correlated to petrogenetic conditions of the source material and can be used as a provenance tool. The aim of this study is to compare results based on this method with previous studies that used other methods, to better constrain the palaeogeographical reconstruction of sedimentary fluxes. Detrital quartz within the samples of the basin shows different patterns of OH-defects and water content, indicating substantial petrogenetic differences between the sediment source rocks. For the oldest analyzed sample (ca. 66 Ma), the distribution of OH-defects suggests a mixed source between igneous and non-igneous rocks, with a predominance of metamorphic material supply. Another sample (56 Ma) reveals a great variability of OH-defects and water content, indicating that the magmatic component dominates over the metamorphic component. The distribution of OH-defects in the samples at the top of the sequence (52–53 Ma) suggests an almost solely metamorphic source. These results are in line with previous studies based on heavy minerals and geochemistry.
- Published
- 2022
- Full Text
- View/download PDF
5. Combination of Genomic and Transcriptomic Approaches Highlights Vascular and Circadian Clock Components in Multiple Sclerosis
- Author
-
Chiara Scapoli, Nicole Ziliotto, Barbara Lunghi, Erica Menegatti, Fabrizio Salvi, Paolo Zamboni, Marcello Baroni, Francesco Mascoli, Francesco Bernardi, and Giovanna Marchetti
- Subjects
multiple sclerosis ,vascular components ,GWAS ,transcriptomics ,WES ,rare variants ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Aiming at exploring vascular components in multiple sclerosis (MS) with brain outflow disturbance, we combined transcriptome analysis in MS internal jugular vein (IJV) wall with WES in MS families with vertical transmission of disease. Main results were the differential expression in IJV wall of 16 MS-GWAS genes and of seven genes (GRIN2A, GRIN2B, IL20RB, IL26, PER3, PITX2, and PPARGC1A) not previously indicated by GWAS but encoding for proteins functionally interacting with MS candidate gene products. Strikingly, 22/23 genes have been previously associated with vascular or neuronal traits/diseases, nine encoded for transcriptional factors/regulators and six (CAMK2G, GRIN2A, GRIN2B, N1RD1, PER3, PPARGC1A) for circadian entrainment/rhythm components. Among the WES low-frequency (MAF ≤ 0.04) SNPs (n = 7) filtered in the 16 genes, the NR1D1 rs17616365 showed significantly different MAF in the Network for Italian Genomes affected cohort than in the 1000 Genome Project Tuscany samples. This pattern was also detected in five nonintronic variants (GRIN2B rs1805482, PER3 rs2640909, PPARGC1A rs2970847, rs8192678, and rs3755863) in genes coding for functional partners. Overall, the study proposes specific markers and low-frequency variants that might help (i) to understand perturbed biological processes in vascular tissues contributing to MS disease, and (ii) to characterize MS susceptibility genes for functional association with disease-pathways.
- Published
- 2021
- Full Text
- View/download PDF
6. The Factor VII Variant p.A354V-p.P464Hfs: Clinical versus Intracellular and Biochemical Phenotypes Induced by Chemical Chaperones
- Author
-
Elisabeth Andersen, Maria Eugenia Chollet, Francesco Bernardi, Alessio Branchini, Marcello Baroni, Guglielmo Mariani, Alberto Dolce, Angelika Batorova, Ellen Skarpen, Christiane Filion Myklebust, Grethe Skretting, and Per Morten Sandset
- Subjects
factor VII deficiency ,chemical chaperones ,mutations ,protein misfolding ,endoplasmic reticulum ,trafficking ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
(1) Background: Congenital factor (F) VII deficiency is caused by mutations in the F7 gene. Patients with modest differences in FVII levels may display large differences in clinical severity. The variant p.A354V-p.P464Hfs is associated with reduced FVII antigen and activity. The aim of the study was to investigate the clinical manifestation of this variant and the underlying molecular mechanisms. (2) Methods: Analyses were conducted in 37 homozygous patients. The recombinant variant was produced in mammalian cells. (3) Results: We report a large variation in clinical phenotypes, which points out genetic and acquired components beyond F7 mutations as a source of variability. In contrast, patients displayed similarly reduced FVII plasma levels with antigen higher than its activity. Comparative analysis of the recombinant variant and of plasma samples from a subset of patients indicated the presence of an elongated variant with indistinguishable migration. Treatment of cells with the chemical chaperone 4-phenylbutyrate (4-PBA) improved the intracellular trafficking of the variant and increased its secretion to the conditioned medium up to 2-fold. However, the effect of 4-PBA on biological activity was marginal. (4) Conclusions: Chemical chaperones can be used as biochemical tools to study the intracellular fate of a trafficking-defective FVII variant.
- Published
- 2021
- Full Text
- View/download PDF
7. Rehabilitation Improves Mitochondrial Energetics in Progressive Multiple Sclerosis: The Significant Role of Robot-Assisted Gait Training and of the Personalized Intensity
- Author
-
Fabio Manfredini, Sofia Straudi, Nicola Lamberti, Simone Patergnani, Veronica Tisato, Paola Secchiero, Francesco Bernardi, Nicole Ziliotto, Giovanna Marchetti, Nino Basaglia, Massimo Bonora, and Paolo Pinton
- Subjects
multiple sclerosis ,exercise training ,lactic acid ,pyruvic acid ,Medicine (General) ,R5-920 - Abstract
Abnormal levels of pyruvate and lactate were reported in multiple sclerosis (MS). We studied the response of markers of mitochondrial function to rehabilitation in relation to type, intensity and endurance performance in severely disabled MS patients. Forty-six progressive MS patients were randomized to receive 12 walking sessions of robot-assisted gait training (RAGT, n = 23) or conventional overground therapy (CT, n = 23). Ten healthy subjects were also studied. Blood samples were collected to determine lactate, pyruvate, and glutathione levels and lactate/pyruvate ratio pre–post rehabilitation. In vivo muscle metabolism and endurance walking capacity were assessed by resting muscle oxygen consumption (rmVO2) using near-infrared spectroscopy and by six-minute walking distance (6MWD), respectively. The levels of mitochondrial biomarkers and rmVO2, altered at baseline with respect to healthy subjects, improved after rehabilitation in the whole population. In the two groups, an enhanced response was observed after RAGT compared to CT for lactate (p = 0.012), glutathione (p = 0.08) and rmVO2 (p = 0.07). Metabolic biomarkers and 6MWD improvements were exclusively correlated with a training speed markedly below individual gait speed. In severely disabled MS patients, rehabilitation rebalanced altered serum metabolic and muscle parameters, with RAGT being more effective than CT. A determinable slow training speed was associated with better metabolic and functional recovery. Trial Registration: ClinicalTrials.gov NCT02421731.
- Published
- 2020
- Full Text
- View/download PDF
8. Combination of Genomic and Transcriptomic Approaches Highlights Vascular and Circadian Clock Components in Multiple Sclerosis
- Author
-
Chiara Scapoli, Nicole Ziliotto, Barbara Lunghi, Erica Menegatti, Fabrizio Salvi, Paolo Zamboni, Marcello Baroni, Francesco Mascoli, Francesco Bernardi, and Giovanna Marchetti
- Subjects
vascular components ,QH301-705.5 ,multiple sclerosis ,Polymorphism, Single Nucleotide ,Article ,Catalysis ,Cohort Studies ,Inorganic Chemistry ,transcriptomics ,Gene Frequency ,Circadian Clocks ,Exome Sequencing ,Humans ,GWAS ,Gene Regulatory Networks ,RNA, Messenger ,Physical and Theoretical Chemistry ,Biology (General) ,Molecular Biology ,QD1-999 ,Spectroscopy ,Circadian rhythm ,Gene Expression Profiling ,Circadian entrainment ,Organic Chemistry ,rare variants ,Multiple sclerosis ,Rare variants ,Transcriptomics ,Vascular components ,WES ,Genomics ,General Medicine ,circadian entrainment ,circadian rhythm ,Introns ,Computer Science Applications ,Chemistry ,Gene Expression Regulation ,Italy ,Case-Control Studies ,Blood Vessels ,Transcriptome ,Genome-Wide Association Study - Abstract
Aiming at exploring vascular components in multiple sclerosis (MS) with brain outflow disturbance, we combined transcriptome analysis in MS internal jugular vein (IJV) wall with WES in MS families with vertical transmission of disease. Main results were the differential expression in IJV wall of 16 MS-GWAS genes and of seven genes (GRIN2A, GRIN2B, IL20RB, IL26, PER3, PITX2, and PPARGC1A) not previously indicated by GWAS but encoding for proteins functionally interacting with MS candidate gene products. Strikingly, 22/23 genes have been previously associated with vascular or neuronal traits/diseases, nine encoded for transcriptional factors/regulators and six (CAMK2G, GRIN2A, GRIN2B, N1RD1, PER3, PPARGC1A) for circadian entrainment/rhythm components. Among the WES low-frequency (MAF ≤ 0.04) SNPs (n = 7) filtered in the 16 genes, the NR1D1 rs17616365 showed significantly different MAF in the Network for Italian Genomes affected cohort than in the 1000 Genome Project Tuscany samples. This pattern was also detected in five nonintronic variants (GRIN2B rs1805482, PER3 rs2640909, PPARGC1A rs2970847, rs8192678, and rs3755863) in genes coding for functional partners. Overall, the study proposes specific markers and low-frequency variants that might help (i) to understand perturbed biological processes in vascular tissues contributing to MS disease, and (ii) to characterize MS susceptibility genes for functional association with disease-pathways.
- Published
- 2022
9. Combination of CLEC4M rs868875 G-Carriership and ABO O Genotypes May Predict Faster Decay of FVIII Infused in Hemophilia A Patients
- Author
-
Barbara Lunghi, Massimo Morfini, Nicola Martinelli, Silvia Linari, Giancarlo Castaman, and Francesco Bernardi
- Subjects
ABO ,congenital, hereditary, and neonatal diseases and abnormalities ,Factor VIII ,Coagulation ,LS7_8 ,CLEC4M SNPs ,General Medicine ,Half-life ,Substitutive treatment ,CLEC4M ,Economica ,factor VIII ,haemophilia A ,pharmacokinetics ,half-life ,clearance ,hemic and lymphatic diseases ,Haemophilia A ,LS2_1 ,Medicine ,Clearance ,LS7_3 ,Pharmacokinetics ,LS4_5 ,LS1_7 - Abstract
The C-type lectin CLEC4M binds and internalizes factor VIII (FVIII). Common CLEC4M variants have been associated with FVIII pharmacokinetic (PK) profiles in hemophilia A (HA) patients. The two-compartment PK analysis of plasma-derived (pd-) and full length recombinant FVIII concentrates was conducted in twenty-six patients (FVIII:C ≤ 2 IU/dL). F8, ABO blood-groups, and the CLEC4M rs868875A/G polymorphism were genotyped. CLEC4M genotype groups differed for the elimination rate constant K 1-0 (p < 0.001), half-life (K 1-0 HL), and the Beta rate constant. Patients treated with pd-FVIII also differed in the Alpha phase. In linear regression models, the contribution of the CLEC4M genotypes to FVIII PK parameters remained significant after correction for ABO, age, and VWF antigen levels at PK. Combined CLEC4M rs868875A/G and ABO genotypes displayed significant interaction (K 1-0, p = 0.014). Compared to other combined genotypes, the G-carriers/O genotypes showed half-reduced K 1-0 HL (p = 0.008), and faster FVIII clearance (mean 7.1 ± 2.2 mL/h/kg SE) than in the G-carriers/non-O (mean 2.4 ± 0.3 mL/h/kg SE), (p = 0.038). Comparison in HA patients recruited in several countries suggests that CLEC4M genotypes coherently influence infused FVIII half-life and clearance. Our analysis supports substantially faster FVIII decay associated with the rs868875 G-carrier/ABO O genotypes, which has potential implications for genetically tailored substitutive HA treatment.
- Published
- 2022
10. Insights into the Effect of Light Pollution on Mental Health: Focus on Affective Disorders—A Narrative Review
- Author
-
Giulia Menculini, Federica Cirimbilli, Veronica Raspa, Francesca Scopetta, Gianmarco Cinesi, Anastasia Grazia Chieppa, Lorenzo Cuzzucoli, Patrizia Moretti, Pierfrancesco Maria Balducci, Luigi Attademo, Francesco Bernardini, Andreas Erfurth, Gabriele Sachs, and Alfonso Tortorella
- Subjects
light pollution ,artificial light at night ,urbanization ,mental health ,circadian rhythms ,mood disorders ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The presence of artificial light at night has emerged as an anthropogenic stressor in recent years. Various sources of light pollution have been shown to affect circadian physiology with serious consequences for metabolic pathways, possibly disrupting pineal melatonin production with multiple adverse health effects. The suppression of melatonin at night may also affect human mental health and contribute to the development or exacerbation of psychiatric disorders in vulnerable individuals. Due to the high burden of circadian disruption in affective disorders, it has been hypothesized that light pollution impacts mental health, mainly affecting mood regulation. Hence, the aim of this review was to critically summarize the evidence on the effects of light pollution on mood symptoms, with a particular focus on the role of circadian rhythms in mediating this relationship. We conducted a narrative review of the literature in the PubMed, Scopus, and Web of Science datasets. After the screening process, eighteen papers were eligible for inclusion. The results clearly indicate a link between light pollution and the development of affective symptoms, with a central role of sleep disturbances in the emergence of mood alterations. Risk perception also represents a crucial topic, possibly modulating the development of affective symptoms in response to light pollution. The results of this review should encourage a multidisciplinary approach to the design of healthier environments, including lighting conditions among the key determinants of human mental health.
- Published
- 2024
- Full Text
- View/download PDF
11. Environmental Risk Factors for Bipolar Disorders and High-Risk States in Adolescence: A Systematic Review
- Author
-
Giulia Menculini, Pierfrancesco Maria Balducci, Luigi Attademo, Francesco Bernardini, Patrizia Moretti, and Alfonso Tortorella
- Subjects
bipolar disorder ,adolescence ,youth ,early-onset bipolar disorder ,high-risk states ,environment ,Medicine (General) ,R5-920 - Abstract
Background and objectives: A deeper comprehension of the role that environmental risk factors play in the development of adolescent Bipolar Disorder (BD), as well as in the evolution of high-risk states for BD, may entangle further prevention and treatment advances. The present systematic review is aimed at critically summarizing evidence about the role that environmental risk factors play in the development of BD in adolescence and their interaction with BD high-risk states. Materials and Methods: MEDLINE/Pubmed, Scopus and Web of Science datasets were systematically searched until 4 September 2020. Original studies that reported information about the role of environmental risk factors in the development of BD during adolescence, or assessing their influence on the development of psychopathology in high-risk states for BD, were considered for inclusion. Two blind researchers performed title/abstract, full-text screening, and hand-screening of relevant references. The risk of bias was assessed by means of the Newcastle-Ottawa Scale. Results: Fourteen studies were included in the review. Negative stressful life events, particularly sexual and physical abuse, but also emotional mistreatment, were associated with more severe psychopathology in adolescents with BD, as well as with higher risk for developing mood disorders in BD offspring. Similar findings were detected for familial environment-related features, such as parental rejection and low perceived care, while no univocal results were found when analyzing familial functioning. Conclusions: The present systematic review confirmed the relevant role that environmental risk factors, particularly negative stressful live events and family-related features, play in the development of BD psychopathology during adolescence. Future studies are expected to clarify possible further environmental factors that may be implicated in the development of BD during youth that may serve as target of prevention and early treatment strategies.
- Published
- 2020
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.