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In this study we present and validate a simple empirical method to obtain bathymetry profiles using the geolocated photon data from the Ice, Cloud, and Land Elevation Satellite-2 (ICESat-2) mission, which was launched by NASA in September 2018. The satellite carries the Advanced Topographic Laser Altimeter System (ATLAS), which is a lidar that can detect single photons and calculate their bounce point positions. ATLAS uses a green laser, causing some of the photons to penetrate the air–water interface. Under the right conditions and in shallow waters (<40 m), these photons are reflected back to ATLAS after interaction with the ocean bottom. Using ICESat-2 data from four different overflights above the Heron Reef, Australia, a comparison with SDB data showed a median absolute deviation of approximately 18 cm and Root Mean Square Errors (RMSEs) down to 28 cm. Crossovers between two different overflights above the Heron Reef showed a median absolute difference of 13 cm. For an area north-west of Sisimiut, Greenland, the comparison was done with multibeam echo sounding data, with RMSEs down to between 35 cm, and correspondingly showed median absolute deviations between 33 and 49 cm. The proposed method works well under good conditions with clear waters such as in the Great Barrier Reef; however, for more difficult areas a more advanced machine learning technique should be investigated in order to find an automated method that can distinguish between bathymetry and other signals and noise. [ABSTRACT FROM AUTHOR]