1. Understanding Acid Lability of Cysteine Protecting Groups.
- Author
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Ramos-Tomillero, Iván, Mendive-Tapia, Lorena, Góngora-Benítez, Miriam, Nicolás, Ernesto, Tulla-Puche, Judit, and Albericio, Fernando
- Subjects
- *
CYSTEINE , *CARBOCATIONS , *PROTEIN structure , *PEPTIDE synthesis , *AMINO acids - Abstract
Cys-disulfide bonds contribute to the stabilization of peptide and protein structures. The synthesis of these molecules requires a proper protection of Cys residues, which is crucial to prevent side-reactions and also to achieve the correct Cys connectivity. Here we undertook a mechanistic study of a set of well-known acid-labile Cys protecting groups, as well other new promising groups, in order to better understand the nature of their acid-lability. The stability of the carbocation generated during the acid treatment was found to have a direct impact on the removal of the protective groups from the corresponding protected Cys-containing peptides. Hence a combination of steric and conjugative effects determines the stability of the carbocations generated. Here we propose diphenylmethyl (Dpm) as a promising protecting group on the basis of its intermediate relative carbocation stability. All the optimized geometries and energies presented in this study were determined using a B3LYP/6-31G(d,p) calculation. The results discussed herein may be of broader applicability for the development of new protecting groups. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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