1. Genome-Wide Association Study (GWAS) for Left Displaced Abomasum in Highly Productive Russian Holstein Cattle.
- Author
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Plemyashov, Kirill, Krutikova, Anna, Belikova, Angelina, Kuznetsova, Tatiana, and Semenov, Boris
- Subjects
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HOLSTEIN-Friesian cattle , *GENOME-wide association studies , *DISEASE susceptibility , *STATISTICAL association , *CATTLE diseases - Abstract
Simple Summary: Left displaced abomasum is a common disease among Holstein cattle that is causing significant economic losses. The exact causes of the disease are unknown, but it is assumed that LDA is multifactorial in nature. Predisposition to the displacement has been shown to be inherited. We conducted a genome-wide study to identify statistical associations between certain mutations and left displaced abomasum in Holstein cows from several farms in the Leningrad region. We found suggestive statistical associations with this disease and several mutations located in a set of genes involved in a variety of physiological processes. Some of these processes may be directly related to the development of the disease being studied. In addition, we conducted runs of homozygosity analysis and found that cows with displaced abomasum are more likely than healthy cows to carry a specific state of genomic regions containing genes associated with body shape, including width. This may indicate the role of this trait in the development of the disease. Left displaced abomasum (LDA) is a multifactorial disease of cattle that occurs mainly during the transition postpartum period and is characterized by a decrease in milk production and an increased risk of culling. Several studies have been conducted confirming the hereditary nature of predisposition to this disease. The aim of our study is to identify genetic associations characterizing the genomic variability of susceptibility to LDA in Holstein cattle of the Leningrad region of the Russian Federation. The objects of this study were 360 highly productive dairy cows divided into two groups: animals with LDA, and healthy ones (control). Runs of homozygosity analysis revealed one ROH on BTA13 that was found to be significantly more prevalent in the group of animals with LDA than in the healthy group. Fourteen candidate SNPs were found to be nominally associated with left displacement of the abomasum (p-value < 1 × 10−4). When performing functional annotation of genes containing associated polymorphisms or located close to them, candidate genes presumably associated with the development of LDA were identified: ABCB11, SRP72, RGS18, SOX4, GSG1L, FBXL19, and PNPLA4. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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