1. Isolation and In Silico SARS-CoV-2 Main Protease Inhibition Potential of Jusan Coumarin, a New Dicoumarin from Artemisia glauca
- Author
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Yerlan M. Suleimen, Rani A. Jose, Raigul N. Suleimen, Margarita Y. Ishmuratova, Suzanne Toppet, Wim Dehaen, Aisha A. Alsfouk, Eslam B. Elkaeed, Ibrahim H. Eissa, and Ahmed M. Metwaly
- Subjects
Biochemistry & Molecular Biology ,PARTICLE MESH EWALD ,Artemisia glauca ,jusan coumarin ,new dicoumarin ,COVID-19 main protease ,molecular similarity ,structure fingerprint ,DFT ,ADMET ,toxicity ,molecular dynamics ,Chemistry, Multidisciplinary ,CHEMICAL-CONSTITUENTS ,Pharmaceutical Science ,Analytical Chemistry ,COMPONENT COMPOSITION ,Drug Discovery ,DOCKING ,Physical and Theoretical Chemistry ,ALPHA-PYRONE DERIVATIVES ,ANTIMICROBIAL ACTIVITY ,Science & Technology ,Organic Chemistry ,Chemistry ,ESSENTIAL OIL ,Chemistry (miscellaneous) ,MOLECULAR-DYNAMICS ,Physical Sciences ,SIMILARITY ,Molecular Medicine ,Life Sciences & Biomedicine ,BIOLOGICAL-ACTIVITY - Abstract
A new dicoumarin, jusan coumarin, (1), has been isolated from Artemisia glauca aerial parts. The chemical structure of jusan coumarin was estimated, by 1D, 2D NMR as well as HR-Ms spectroscopic methods, to be 7-hydroxy-6-methoxy-3-[(2-oxo-2H-chromen-6-yl)oxy]-2H-chromen-2-one. As the first time to be introduced in nature, its potential against SARS-CoV-2 has been estimated using various in silico methods. Molecular similarity and fingerprints experiments have been utilized for 1 against nine co-crystallized ligands of COVID-19 vital proteins. The results declared a great similarity between Jusan Coumarin and X77, the ligand of COVID-19 main protease (PDB ID: 6W63), Mpro. To authenticate the obtained outputs, a DFT experiment was achieved to confirm the similarity of X77 and 1. Consequently, 1 was docked against Mpro. The results clarified that 1 bonded in a correct way inside Mpro active site, with a binding energy of -18.45 kcal/mol. Furthermore, the ADMET and toxicity profiles of 1 were evaluated and showed the safety of 1 and its likeness to be a drug. Finally, to confirm the binding and understand the thermodynamic characters between 1 and Mpro, several molecular dynamics (MD) simulations studies have been administered. Additionally, the known coumarin derivative, 7-isopentenyloxycoumarin (2), has been isolated as well as β-sitosterol (3). ispartof: MOLECULES vol:27 issue:7 ispartof: location:Switzerland status: published
- Published
- 2022