1. RNASeq Analysis of Aedes albopictus Mosquito Midguts after Chikungunya Virus Infection
- Author
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Mary Tachedjian, Prasad N. Paradkar, Matthew J. Neave, Melissa J. Klein, Ravikiran Vedururu, Jean-Bernard Duchemin, Paul R Gorry, Australian Animal Health Laboratory (AAHL), CSIRO Health and Biosecurity [Australia], Commonwealth Scientific and Industrial Research Organisation [Canberra] (CSIRO)-Commonwealth Scientific and Industrial Research Organisation [Canberra] (CSIRO), and Royal Melbourne Institute of Technology University (RMIT University)
- Subjects
0301 basic medicine ,Host–pathogen interactions ,viruses ,lcsh:QR1-502 ,MESH: Chikungunya Fever ,medicine.disease_cause ,RNASeq ,lcsh:Microbiology ,Transcriptome ,0302 clinical medicine ,Aedes ,MESH: Animals ,Aedes albopictus ,Chikungunya ,Vector (molecular biology) ,MESH: Immunity ,biology ,Communication ,virus diseases ,MESH: Aedes ,3. Good health ,Intestines ,Infectious Diseases ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,Host-Pathogen Interactions ,MESH: Mosquito Vectors ,Chikungunya virus ,MESH: Intestines ,030231 tropical medicine ,education ,Aedes aegypti ,Mosquito Vectors ,Virus ,03 medical and health sciences ,MESH: Gene Expression Profiling ,MESH: Whole Exome Sequencing ,Virology ,parasitic diseases ,Exome Sequencing ,medicine ,Animals ,Humans ,[SDV.MP.PAR]Life Sciences [q-bio]/Microbiology and Parasitology/Parasitology ,Gene ,[SDV.EE.SANT]Life Sciences [q-bio]/Ecology, environment/Health ,MESH: Humans ,Gene Expression Profiling ,MESH: Host-Pathogen Interactions ,fungi ,Immunity ,MESH: Chikungunya virus ,biology.organism_classification ,[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate Zoology ,030104 developmental biology ,Chikungunya Fever ,Reference genome - Abstract
Chikungunya virus (CHIKV) is an emerging pathogen around the world and causes significant morbidity in patients. A single amino acid mutation in the envelope protein of CHIKV has led to a shift in vector preference towards Aedes albopictus. While mosquitoes are known to mount an antiviral immune response post-infection, molecular interactions during the course of infection at the tissue level remain largely uncharacterised. We performed whole transcriptome analysis on dissected midguts of Aedes albopictus infected with CHIKV to identify differentially expressed genes. For this, RNA was extracted at two days post-infection (2-dpi) from pooled midguts. We initially identified 25 differentially expressed genes (p-value <, 0.05) when mapped to a reference transcriptome. Further, multiple differentially expressed genes were identified from a custom de novo transcriptome, which was assembled using the reads that did not align with the reference genome. Thirteen of the identified transcripts, possibly involved in immunity, were validated by qRT-PCR. Homologues of seven of these genes were also found to be significantly upregulated in Aedes aegypti midguts 2 dpi, indicating a conserved mechanism at play. These results will help us to characterise the molecular interaction between Aedes albopictus and CHIKV and can be utilised to reduce the impact of this viral infection.
- Published
- 2019