1. Comparative Transcriptomes of the Body Wall of Wild and Farmed Sea Cucumber Isostichopus badionotus
- Author
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Cristobal Garikoitz-Legarda, Alicia Poot-Salazar, Víctor May-Solis, Jesús Alejandro Zamora-Briseño, Juan Antonio Pérez-Vega, Alberto Dávalos, Juan Carlos Triviño, George Grant, Leticia Olivera-Castillo, Nuvia Kantún-Moreno, Roberto Martín-Hernández, Judit Gil-Zamorano, Rossanna Rodríguez-Canul, Oscar Medina-Contreras, and Miguel A. Olvera-Novoa
- Subjects
0301 basic medicine ,Sea Cucumbers ,RNA-sequencing ,Zoology ,Animals, Wild ,Biology ,Catalysis ,Article ,Inorganic Chemistry ,Transcriptome ,lcsh:Chemistry ,03 medical and health sciences ,Sea cucumber ,Aquaculture ,Animals ,Isostichopus badionotus ,Physical and Theoretical Chemistry ,Molecular Biology ,lcsh:QH301-705.5 ,Spectroscopy ,Impaired nutrient utilization ,business.industry ,Gene Expression Profiling ,Organic Chemistry ,Computational Biology ,Reproducibility of Results ,04 agricultural and veterinary sciences ,General Medicine ,biology.organism_classification ,First generation ,Computer Science Applications ,Metabolic pathway ,030104 developmental biology ,Gene Ontology ,lcsh:Biology (General) ,lcsh:QD1-999 ,aquaculture ,Animals, Domestic ,040102 fisheries ,gene expression ,0401 agriculture, forestry, and fisheries ,business ,holothurids ,transcriptome ,sea cucumber ,Function (biology) - Abstract
Overfishing of sea cucumber Isostichopus badionotus from Yucatan has led to a major population decline. They are being captured as an alternative to traditional species despite a paucity of information about their health-promoting properties. The transcriptome of the body wall of wild and farmed I. badionotus has now been studied for the first time by an RNA-Seq approach. The functional profile of wild I. badionotus was comparable with data in the literature for other regularly captured species. In contrast, the metabolism of first generation farmed I. badionotus was impaired. This had multiple possible causes including a sub-optimal growth environment and impaired nutrient utilization. Several key metabolic pathways that are important in effective handling and accretion of nutrients and energy, or clearance of harmful cellular metabolites, were disrupted or dysregulated. For instance, collagen mRNAs were greatly reduced and deposition of collagen proteins impaired. Wild I. badionotus is, therefore, a suitable alternative to other widely used species but, at present, the potential of farmed I. badionotus is unclear. The environmental or nutritional factors responsible for their impaired function in culture remain unknown, but the present data gives useful pointers to the underlying problems associated with their aquaculture.
- Published
- 2021