1. Characterization of microRNAs Involved in Embryonic Stem Cell States
- Author
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Lanlan Shen, Yunbing Tan, Irena Ivanovska, Julie Mathieu, Michele A. Cleary, Daniel G. Miller, Bradford M. Stadler, C. Anthony Blau, Carol B. Ware, Angelique M. Nelson, Kshama Mehta, Hannele Ruohola-Baker, Sunny Song, Garrick Peters, and Christopher Darby
- Subjects
Pluripotent Stem Cells ,Homeobox protein NANOG ,Cellular differentiation ,Cell Culture Techniques ,Embryoid body ,Biology ,Stem cell marker ,Cell Line ,Mice ,Original Research Reports ,Animals ,Humans ,Induced pluripotent stem cell ,reproductive and urinary physiology ,Embryonic Stem Cells ,Gene Expression Profiling ,food and beverages ,Cell Differentiation ,Cell Biology ,Hematology ,Microarray Analysis ,Embryonic stem cell ,Molecular biology ,Cell biology ,Macaca fascicularis ,MicroRNAs ,embryonic structures ,sense organs ,Stem cell ,Developmental Biology ,Adult stem cell - Abstract
Studies of embryonic stem cells (ESCs) reveal that these cell lines can be derived from differing stages of embryonic development. We analyzed common changes in the expression of microRNAs (miRNAs) and mRNAs in 9 different human ESC (hESC) lines during early commitment and further examined the expression of key ESC-enriched miRNAs in earlier developmental states in several species. We show that several previously defined hESC-enriched miRNA groups (the miR-302, −17, and −515 families, and the miR-371–373 cluster) and several other hESC-enriched miRNAs are down-regulated rapidly in response to differentiation. We further found that mRNAs up-regulated upon differentiation are enriched in potential target sites for these hESC-enriched miRNAs. Interestingly, we also observed that the expression of ESC-enriched miRNAs bearing identical seed sequences changed dynamically while the cells transitioned through early embryonic states. In human and monkey ESCs, as well as human-induced pluripotent stem cells (iPSCs), the miR-371–373 cluster was consistently up-regulated, while the miR-302 family was mildly down-regulated when the cells were chemically treated to regress to an earlier developmental state. Similarly, miR-302b, but not mmu-miR-295, was expressed at higher levels in murine epiblast stem cells (mEpiSC) as compared with an earlier developmental state, mouse ESCs. These results raise the possibility that the relative expression of related miRNAs might serve as diagnostic indicators in defining the developmental state of embryonic cells and other stem cell lines, such as iPSCs. These data also raise the possibility that miRNAs bearing identical seed sequences could have specific functions during separable stages of early embryonic development.
- Published
- 2010