1. SOD1 haplotypes in familial keratoconus.
- Author
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Udar N, Atilano SR, Small K, Nesburn AB, and Kenney MC
- Subjects
- Alleles, Corneal Topography, Dinucleotide Repeats, Female, Gene Deletion, Genes, Dominant, Genetic Markers, Humans, Introns, Keratoconus diagnosis, Male, Microsatellite Repeats, Pedigree, Polymorphism, Genetic, Superoxide Dismutase-1, Haplotypes, Keratoconus genetics, Superoxide Dismutase genetics
- Abstract
Purpose: We reported previously a 7-base intronic deletion close to the intron/exon junction of the SOD1 gene in 2 separate families with an autosomal-dominant form of keratoconus. The goal of this study was to determine if the 2 families (families A and H) shared a common haplotype by identifying closely linked new microsatellite markers flanking the SOD1 gene., Methods: Total genomic DNA was extracted from the blood of available members of families A and H. The DNA was amplified by polymerase chain reaction and digested with HpyCH4 III. A genomic contig was first constructed flanking the human SOD1 gene on chromosome 21q22.1-21q22.11. New polymorphic microsatellite markers were identified. All available individuals from the 2 families were genotyped using a set of 7 different markers (SOD1NU10, SOD1NU1, SOD1NU2, SOD1NU3, SOD1NU13, SOD1NU8, and SOD1NU9) to identify phase and the disease haplotype was constructed., Results: Five of the 7 markers are novel (SOD1NU1, SOD1NU2, SOD1NU3, SOD1NU8, and SOD1NU9). Family A is a 3-generation family and the disease haplotype was inferred based on segregation data for 7 different markers. Family H shared only 3 of the disease-associated alleles (SOD1NU1, SOD1NU2, and SOD1NU13) compared with family A., Conclusion: Based on the dissimilarity of disease-associated alleles, the 2 families do not appear to share the same haplotype and therefore are not closely related. This strongly supports the uniqueness of the 7-base deletion in intron 2 of the SOD1 gene to the keratoconus phenotype.
- Published
- 2009
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