1. Unique features of the m6A methylome and its response to drought stress in sea buckthorn (Hippophae rhamnoides Linn.)
- Author
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Guoyun Zhang, Zhongrui Lv, Aiguo Duan, Caiyun He, Jianguo Zhang, Songfeng Diao, and Hong Liu
- Subjects
Untranslated region ,Adenosine ,Methylation ,Transcriptome ,chemistry.chemical_compound ,Gene Expression Regulation, Plant ,Stress, Physiological ,Hippophae ,RNA, Messenger ,KEGG ,Molecular Biology ,Phylogeny ,Plant Proteins ,Genetics ,biology ,Abiotic stress ,Gene Expression Profiling ,MRNA modification ,fungi ,food and beverages ,Hippophae rhamnoides ,Cell Biology ,biology.organism_classification ,Droughts ,chemistry ,biology.protein ,Demethylase ,N6-Methyladenosine ,Research Paper ,Signal Transduction - Abstract
In plants, recent studies have revealed that N6-methyladenosine (m(6)A) methylation of mRNA has potential regulatory functions of this mRNA modification in many biological processes. m(6)A methyltransferase, m(6)A demethylase and m(6)A-binding proteins can cause differential phenotypes, indicating that m(6)A may have critical roles in the plant. In this study, we depicted the m(6)A map of sea buckthorn (Hippophae rhamnoides Linn.) transcriptome. Similar to A. thaliana, m(6)A sites of sea buckthorn transcriptome is significantly enriched around the stop codon and within 3ʹ-untranslated regions (3ʹUTR). Gene ontology analysis shows that the m(6)A modification genes are associated with metabolic biosynthesis. In addition, we identified 13,287 different m(6)A peaks (DMPs) between leaf under drought (TR) and control (CK) treatment. It reveals that m(6)A has a high level of conservation and has a positive correlation with mRNA abundance in plants. GO and KEGG enrichment results showed that DMP modification DEGs in TR were particularly associated with ABA biosynthesis. Interestingly, our results showed three m(6)A demethylase (HrALKBH10B, HrALKBH10C and HrALKBH10D) genes were significantly increased following drought stress, which indicated that it may contributed the decreased m(6)A levels. This exhaustive m(6)A map provides a basis and resource for the further functional study of mRNA m(6)A modification in abiotic stress.
- Published
- 2021
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