1. Copy-Number Variants in The Contactin-5 Gene Are a Potential Risk Factor for Autism Spectrum Disorder
- Author
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Elise Douard, Herve Lemaitre, Amélie Musa-Johnson, Lan Xiong, Guy A. Rouleau, Caroline Hayward, Gunter Schumann, Tobias Banaschewski, Boris Chaumette, Sylvane Desrivières, Mor Absa Loum, Guillaume Huguet, Arun L.W. Bokde, Patrick A. Dion, Calwing Liao, Alexandre Dionne-Laporte, Zoe Schmilovich, Qin He, Jay P. Ross, Dan Spiegelman, Sébastien Jacquemont, Martinez Rico, Clara, McGill University = Université McGill [Montréal, Canada], CHU Sainte Justine [Montréal], Centre de Recherche de l’Institut Universitaire en Santé Mentale de Montréal (CRIUSMM), University of Edinburgh, Central Institute of Mental Health [Mannheim], Medical Faculty [Mannheim], Trinity College Dublin, King‘s College London, Université Paris-Saclay, Montreal Neurological Institute and Hospital, Institut de psychiatrie et neurosciences de Paris (IPNP - U1266 Inserm), and Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité)
- Subjects
Genetics ,genetic structures ,neurodevelopment ,Potential risk ,business.industry ,CNTN5 ,Contactin 5 ,intronic deletions ,CNV ,Biology ,medicine.disease ,behavioral disciplines and activities ,ASD ,inherited ,Text mining ,Autism spectrum disorder ,mental disorders ,medicine ,[SDV.NEU]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC] ,Copy-number variation ,[SDV.NEU] Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC] ,business ,Gene - Abstract
BackgroundContactin-5 (CNTN5) is a candidate risk gene for autism spectrum disorder (ASD), yet previous attempts to associate copy-number variants (CNVs) encompassing CNTN5 with ASD-susceptibility were limited by insufficient statistical power. Here, we aim to clarify the putative association between CNTN5 CNVs and ASD-risk using large samples. MethodsFirst, we calculated the prevalence and transmission of CNTN5 CNVs in ASD across three ASD cohorts (SSC, MSSNG, and SPARK), the cases reported in the Mercati et al. study, and the BBGRE database (n = 16,607). Second, we modelled their transmission in children with ASD compared to their unaffected siblings. Third, we assessed their frequency in cases with ASD compared to unselected population controls (n = 24,898) and replicated the findings in UK Biobank (UKBB), an independent general population cohort (n = 459,855). Finally, we evaluated the clinical impact of CNTN5 CNVs by assessing their enrichment in a broad neurodevelopmental disorder (NDD) cohort, and the clinical profile of CNTN5 CNV carriers in the DECIPHER database.ResultsThe prevalence of CNTN5 exonic deletions and duplications was stable across ASD and across unselected cohorts (0.042% and 0.020%, respectively). We found a significant enrichment of intronic CNTN5 deletions CNVs in ASD compared to unselected controls (0.175% and 0.004%, respectively). CNVs in most cases with ASD (29 out of 30, 96.7%) were inherited. Parents transmitted the variants to their affected and unaffected children with the same frequency. No differences in exonic CNTN5 CNVs enrichment between cases with ASD compared to individuals with NDDs was observed. LimitationsThe lack of phenotypic data available for unaffected family members of probands with ASD limits the potential to assess whether CNTN5 CNVs segregate with other neuropsychiatric or sub-threshold autistic traits. Different genotyping or sequencing technologies may affect the differences in CNTN5 CNV prevalence across cohorts.ConclusionCNTN5 CNVs are rare inherited ASD susceptibility variants. They may also confer risk for other neuropsychiatric disorders. We offer a powerful framework to investigate candidate susceptibility variants that may not be detected through small-scale approaches. This approach may reveal more intermediate effect-size variants that are implicated in the etiology of ASD.
- Published
- 2021