1. Affinity capture using chimeric membrane proteins bound to magnetic beads for rapid ligand screening by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
- Author
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Max Goyffon, Jeanine Tortajada, Marie-France Martin-Eauclaire, Catherine Guette, Christian Legros, Laboratoire Récepteurs et Canaux Ioniques Membranaires (RCIM), Université d'Angers (UA)-Institut National de la Recherche Agronomique (INRA), Substances d'Origine Naturelle et Analogues Structuraux (SONAS), Université d'Angers (UA), Centre de recherche en neurobiologie - neurophysiologie de Marseille (CRN2M), Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Laboratoire Analyse et Modélisation pour la Biologie et l'Environnement (LAMBE - UMR 8587), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université de Cergy Pontoise (UCP), Université Paris-Seine-Université Paris-Seine-Université d'Évry-Val-d'Essonne (UEVE)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Récepteurs et Canaux Ioniques Membranaires (RCIM), Laboratoire Analyse et Modélisation pour la Biologie et l'Environnement (LAMBE), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Centre de Recherche en Cancérologie Nantes-Angers (CRCNA), Centre Hospitalier Universitaire d'Angers (CHU Angers), PRES Université Nantes Angers Le Mans (UNAM)-PRES Université Nantes Angers Le Mans (UNAM)-Hôtel-Dieu de Nantes-Institut National de la Santé et de la Recherche Médicale (INSERM)-Hôpital Laennec-Centre National de la Recherche Scientifique (CNRS)-Faculté de Médecine d'Angers-Centre hospitalier universitaire de Nantes (CHU Nantes), Ecosystèmes et Interactions Toxiques, and Muséum national d'Histoire naturelle (MNHN)-Institut National de la Santé et de la Recherche Médicale (INSERM)
- Subjects
Spectrometry, Mass, Electrospray Ionization ,MESH: Isotope Labeling ,Protein mass spectrometry ,MESH: Immunomagnetic Separation ,KcsA potassium channel ,Scorpion Venoms ,Peptide ,Mass spectrometry ,Ligands ,01 natural sciences ,Sensitivity and Specificity ,MESH: Spectrometry, Mass, Electrospray Ionization ,Sample preparation in mass spectrometry ,Analytical Chemistry ,03 medical and health sciences ,MESH: Ligands ,Matrix-Assisted Laser Desorption-Ionization ,MESH: Proteins ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Spectroscopy ,030304 developmental biology ,chemistry.chemical_classification ,Immunoassay ,0303 health sciences ,Chromatography ,Chemistry ,Spectrometry ,Immunomagnetic Separation ,010401 analytical chemistry ,Organic Chemistry ,Electrospray Ionization ,Reproducibility of Results ,Proteins ,Mass ,Fusion protein ,MESH: Sensitivity and Specificity ,0104 chemical sciences ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,MESH: Reproducibility of Results ,Membrane protein ,MESH: Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,Isotope Labeling ,MESH: Immunoassay - Abstract
International audience; The rapid and specific detection of therapeutically important ligands in complex mixtures, that may bind to membrane proteins, remains challenging for many research laboratories and pharmaceutical industries. Through its use in the development of screening assays, mass spectrometry (MS) is currently experiencing a period of tremendous expansion. In the study presented here, we took advantage of the remarkable stability properties of a bacterial membrane protein, the KcsA K+ channel, produced in E. coli and purified as a tetrameric protein in the presence of a detergent. This membrane protein can subserve as a molecular template to display the pore-forming region of human K+ channels, which are considered as targets in the search for inhibitory ligands. The engineered chimeric proteins were linked to metal-bound magnetic beads, for the screening of complex peptide mixtures, such as that of scorpion venoms. The affinity-captured scorpion toxins were eluted prior to matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOFMS), and to nano-electrospray ionization tandem mass QqTOF mass spectrometry (MS/MS) analysis. The de novo sequence of the toxins was deduced by combining the MS/MS fragmentation of the reduced form (up to the 33 first residues) and the trypsin digest peptides of the native toxins. This affinity-capture screening assay led to the isolation and characterization of potent and specific ligands of the human K+ channel, Kv1.3. The affinity-capture procedure is fast and reproducible. When linked to magnetic beads, the chimeric membrane protein can be re-used several times without losing any of its selectivity or specificity. This assay also benefits from the fact that it requires minimal amounts of animal venoms or complex mixtures, which can be expensive or difficult to procure.
- Published
- 2009
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