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Despite ample evidence of micro- and small-scale (i.e., millimeter- to meter-scale) phytoplankton and zooplankton patchiness in the ocean, direct observations of nutrient distributions and the ecological importance of this phenomenon are still relatively scarce. In this context, we first describe a simple procedure to continuously sample nutrients in surface waters, and subsequently provide evidence of the existence of microscale distribution of ammonium in the ocean. We further show that ammonium is never homogeneously distributed, even under very high conditions of turbulence. Instead, turbulence intensity appears to control nutrient patchiness, with a more homogeneous or a more heterogeneous distribution observed under high and low turbulence intensities, respectively, under the same concentration in nutrient. Based on a modelling procedure taking into account the stochastic properties of intermittent nutrient distributions and observations carried out on natural phytoplankton communities, we introduce and verify the hypothesis that under nutrient limitation, the &ldquo, turbulent history&rdquo, of phytoplankton cells, i.e., the turbulent conditions they experienced in their natural environments, conditions their efficiency to uptake ephemeral inorganic nitrogen patches of different concentrations. Specifically, phytoplankton cells exposed to high turbulence intensities (i.e., more homogeneous nutrient distribution) were more efficient to uptake high concentration nitrogen pulses (2 &micro, M). In contrast, under low turbulence conditions (i.e., more heterogeneous nutrient distribution), uptake rates were higher for low concentration nitrogen pulses (0.5 &micro, M). These results suggest that under nutrient limitation, natural phytoplankton populations respond to high turbulence intensities through a decrease in affinity for nutrients and an increase in their transport rate, and vice versa.

International audience; The continental coastal waters of the Eastern Channel, from Normandy to Hauts-de-France, are subject to the major influence of unbalanced nutrient inputs from inflowing rivers. Several episodes of harmful algal blooms (HABs) compromising fishing and shellfish farming activities have been observed at the coast. For a better understanding of how the land-to-sea aquatic continuum functions, the GRAFS-RIVERSTRAHLER river biogeochemical model was implemented to cover the watersheds of 11 rivers flowing into this area (including the Seine) and chained with the ecological marine ECO-MARS3D model, applied to the French Northern coastal zone. Human activities strongly impact on the functioning of coastal ecosystems. Specifically, for these fertile soils of Northern France, intensive agricultural nitrogen (N) deliveries in excess over silica (Si) and phosphorus (P), essentially of diffuse origin, are potentially responsible for coastal eutrophication. Phosphorous is today equally supplied by diffuse and point sources, after a drastic reduction of inputs from wastewater treatment plants since the 2000s, and is better balanced regarding Si, as shown by the indicators of coastal eutrophication potential (P-ICEP versus N-ICEP). However, despite this drastic P reduction, HABs still appear repeatedly. Exploration of several scenarios of agro-food chain reorganization shows that (i) further progress in urban wastewater treatment to fully comply with current European regulations will not result in a significant reduction of nutrient fluxes to the sea, hence including HABs, and (ii) radical structural changes in agriculture, based on generalization of long and diversified organic crop rotations, reconnection of crop and livestock farming and changes in the human diet have the capacity to significantly reduce nutrient flows, coastal eutrophication and HABs.

International audience; Phytoplankton primary production varies considerably with environmental parameters especially in dynamic ecosystems like estuaries. The aim of this study was to investigate short-term primary production along the salinity gradient of a temperate estuary over the course of 1 year. The combination of carbon incorporation and fluorescence methods enabled primary production estimation at short spatial and temporal scales. The electron requirement for carbon fixation was investigated in relation with physical-chemical parameters to accurately estimate primary production at high frequency. These results combined with the variability of the photic layer allowed the annual estimation of primary production along the estuary. Phytoplankton dynamics was closely related to salinity and turbidity gradients, which strongly influenced cells physiology and photoacclimatation. The number of electrons required to fix 1 mol of carbon (C) was ranged between 1.6 and 25 mol electron mol C−1 with a mean annual value of 8 ± 5 mol electron mol C−1. This optimum value suggests that in nutrient replete conditions like estuaries, alternative electron flows are low, while electrons transfer from photosystem II to carbon fixation is highly efficient. A statistical model was used to improve the estimation of primary production from electron transport rate as a function of significant environmental parameters. Based on this model, daily carbon production in the Seine estuary (France) was estimated by considering light and photic zone variability. A mean annual daily primary production of 0.12 ± 0.18 g C m−2 day−1 with a maximum of 1.18 g C m−2 day−1 in summer was estimated which lead to an annual mean of 64.75 g C m−2 year−1. This approach should be applied more frequently in dynamic ecosystems such as estuaries or coastal waters to accurately estimate primary production in those valuable ecosystems.

Exopolysaccharides (EPS) play an important role in the carbon flux and may be directly linked to phytoplankton and microphytobenthos production, most notably in estuarine systems. However the temporal and spatial dynamics of estuarine EPS are still not well understood, nor how primary productivity triggers this variability at these different scales. The aim of this study was to investigate the primary productivity of phytoplankton and EPS dynamics in the Seine estuary over a tidal cycle in three different haline zones over two contrasted seasons. The other objectives was to investigate the origin of pools of soluble carbohydrates (S-EPS) and transparent exopolymeric particles (TEP) in phytoplankton, microphytobenthos or other compartments. High frequency measurements of productivity were made in winter and summer 2015. Physical and chemical parameters, biomass and EPS were measured at hourly intervals in sub-surface waters and just above the water sediment-interface. Our results confirmed that high frequency measurements improve the accuracy of primary productivity estimations and associated carbon fluxes in estuaries. The photosynthetic parameters were shown to be strongly controlled by salinity and by the concentrations of suspended particle matter at the smallest temporal and at spatial scales. At these scales, our results showed an inverse relationship between EPS concentrations and biomass and productivity, and a positive relationship with sediment resuspension. Additionally, the distribution of EPS appears to be linked to hydrodynamics with the tide at daily scale and with the winter at seasonal scale. At spatial scale, the maximum turbidity zone played an important role in the distribution of TEP. Our results suggest that, in the Seine estuary, between 9% and 33% of the S-EPS pool in the water column can be attributed to phytoplankton excretion, while only 0.4%–1.6% (up to 6.14% in exceptional conditions) originates from the microphytobenthos compartments. Most EPS was attributed to remobilization of detrital carbon pools in the maximum turbidity zone and in the sediment or allochthonous origin.

International audience; The population dynamics of different Pseudo-nitzschia species, along with particulate domoic acid (pDA) concentrations, were studied from May 2012 to December 2013 in the Bay of Seine (English Channel, Normandy). While Pseudo-nitzschia spp. blooms occurred during the two years of study, Pseudo-nitzschia species diversity and particulate domoic acid concentrations varied greatly. In 2012, three different species were identified during the spring bloom (P. australis, P. pungens and P. fraudulenta) with high pDA concentrations (similar to 1400 ngl(-1)) resulting in shellfish harvesting closures. In contrast, the 2013 spring was characterised by a P. delicatissima bloom without any toxic event. Above all, the results show that high pDA concentrations coincided with the presence of P. australis and with potential silicate limitation (Si: N < 1), while nitrate concentrations were still replete. The contrasting environmental conditions between 2012 and 2013 highlight different environmental controls that might favour the development of either P. delicatissima or P. australis. This study points to the key role of Pseudo-nitzschia diversity and cellular toxicity in the control of particulate domoic acid variations and highlights the fact that diversity and toxicity are influenced by nutrients, especially nutrient ratios. (C) 2017 Elsevier B.V. All rights reserved.

International audience; Background : Picophytoplankton (i.e. cyanobacteria and pico-eukaryotes) are abundant and ecologically critical components of the autotrophic communities in the pelagic realm. These micro-organisms colonized a variety of extreme environments including high salinity waters. However, the distribution of these organisms along strong salinity gradient has barely been investigated. The abundance and community structure of cyanobacteria and pico-eukaryotes were investigated along a natural continuous salinity gradient (1.8% to 15.5%) using flow cytometry. Results : Highest picophytoplankton abundances were recorded under salinity conditions ranging between 8.0% and 11.0% (1.3 x 106 to 1.4 x 106 cells ml-1). Two populations of picocyanobacteria (likely Synechococcus and Prochlorococcus) and 5 distinct populations of pico-eukaryotes were identified along the salinity gradient. The picophytoplankton cytometric-richness decreased with salinity and the most cytometrically diversified community (4 to 7 populations) was observed in the brackish-marine part of the lagoon (i.e. salinity below 3.5%). One population of pico-eukaryote dominated the community throughout the salinity gradient and was responsible for the bloom observed between 8.0% and 11.0%. Finally only this halotolerant population and Prochlorococcus-like picocyanobacteria were identified in hypersaline waters (i.e. above 14.0%). Salinity was identified as the main factor structuring the distribution of picophytoplankton along the lagoon. However, nutritive conditions, viral lysis and microzooplankton grazing are also suggested as potentially important players in controlling the abundance and diversity of picophytoplankton along the lagoon. Conclusion : The complex patterns described here represent the first observation of picophytoplankton dynamics along a continuous gradient where salinity increases from 1.8% to 15.5%. This result provides new insight into the distribution of pico-autotrophic organisms along strong salinity gradients and allows for a better understanding of the overall pelagic functioning in saline systems which is critical for the management of these precious and climatically-stress ecosystems.

Despite the long-standing belief that seawater viscosity is driven by temperature and salinity, biologically increased seawater viscosity has repeatedly been reported in relation to phytoplankton exudates in shallow, productive coastal waters. Here, seawater viscosity was investigated in relation to microbial and phytoplanktonic communities off the coast of East Antarctica along latitudinal transects located between 30°E and 80°E in sub-surface waters and at the deep chlorophyll maximum (DCM). The physical component of seawater viscosity observed along each transects ranged from 1.80 to 1.95 cP, while the actual seawater viscosity ranged from 1.85 to 3.69 cP. This resulted in biologically increased seawater viscosity reaching up to 84.9% in sub-surface waters and 77.6% at the DCM. Significant positive correlations were found between elevated seawater viscosity and (i) bacterial abundance in sub-surface waters and (ii) chlorophyll a concentration and the abundance of flow cytometrically-defined auto- and heterotrophic protists at the DCM. Among the 12 groups and 108 species of protists identified under light microscopy, dinoflagellates and more specifically Alexandrium tamarense and Prorocentrum sp. were the main contributors to the patterns observed for elevated seawater viscosity. Our observations, which generalised the link previously identified between seawater viscosity and phytoplankton composition and standing stock to the Southern Ocean, are the first demonstration of increases in seawater viscosity linked to marine bacterial communities, and suggest that the microbially-increased viscosity might quantitatively be at least as important as the one related to phytoplankton secretion.

International audience; The abundance and community structure of viruses and heterotrophic bacteria were investigated along a natural continuous salinity gradient (18 to 155 PSU) in a South Australian temperate coastal lagoon using flow cytometry. The brackish waters of the lagoon (18 to 25 PSU) were characterised by high viral concentrations (1.3 × 108 to 1.5 × 108 ml–1) and elevated virus to bacteria ratios (11.7 to 15.5), suggesting high viral infection rates and long persistence of viruses in the water. The increase in salinity above 25 PSU resulted in a decrease in viral abundance without a significant modification of bacterial abundance. A concomitant increase in viral and bacterial abundances with salinity was observed from 50 to 150 PSU, where the highest abundances were observed (1.4 × 108 and 2.5 × 108 ml–1, respectively). Prokaryote cytometric richness also varied greatly along the salinity gradient, suggesting a modification of the phylogenetic composition and/or variability in the activity level of the bacterioplankton community along the salinity gradient. The most cytometrically diversified bacterial community (6 to 7 subpopulations) was observed between 50 and 150 PSU. BIOENV analysis identified salinity as the main factor structuring the distribution of bacteria throughout the lagoon. The effect of salinity on viral populations appeared to be more indirect, as the distribution of viruses was mainly driven by host abundance (i.e. bacteria) along the salinity gradient. The complex patterns described here represent the first observation of viral and microbial dynamics along a continuous salinity gradient from 18 to 155 PSU.

Respiration in marine bacteria (fraction 2) concentrations measured with a fibre-optic oxygen sensor (optode) during short-term incubations (5 to 6 hours) in the dark. Sub-populations of heterotrophic bacteria were defined and enumerated by flow cytometric analysis. Respiration rates ranged from 0.04 to 0.14 µmol O2l−1h−1and were not correlated to total bacteria abundances. In contrast, they significantly increased with the relative proportion of HDNA cells (i.e. high deoxyribonucleic acid content) within the bacterioplankton community. These results stress the need to relate bacterial respiration rates to the absolute and relative abundance of the different cytometrically defined sub-populations found in bacterial assemblages, rather than to total cell counts. This result indicates that only a fraction of bacterial cells may contribute to bacterial respiration, which indicates a reconsideration of the relevance of some previous estimates of bulk bacterial respiration and the related biogeochemical fluxes may be required.