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9 results on '"Harlizius, B."'

2. Differentiation of European cattle by AFLP fingerprinting

Author

Negrini, R, Nijman, I J, Milanesi, E, Moazami-Goudarzi, K, Williams, J L, Erhardt, G, Dunner, S, Rodellar, C, Valentini, A, Bradley, D G, Olsaker, I, Kantanen, J, Ajmone-Marsan, P, Lenstra, J A, Laloë, D, Wiener, P, Burton, D, Weimann, C, Harlizius, B, Barre-Dirie, A, Mengers, A, Looft, C, Kalm, E, Cañón, J, Zaragoza, P, Martín-Burriel, I, Sanchez, A, Savarese, M C, Marchitelli, C, Zanotti, M, Pilla, F, Bruzzone, A, Iamartino, D, Holm, Lars-Erik, Eythorsdottir, E, Mommens, G, Dolf, G, Felius, M, Catholic University of the Sacred Heart, UItrecht University, Partenaires INRAE, Unité de recherche Génétique Biochimique et Cytogénétique (LGBC), Institut National de la Recherche Agronomique (INRA), Roslin Institute, Justus-Liebig-Universität Gießen (JLU), Universidad Complutense de Madrid = Complutense University of Madrid [Madrid] (UCM), University of Zaragoza - Universidad de Zaragoza [Zaragoza], Trinity College Dublin, Norwegian School of Veterinary Science, Agrifood Research Finland, Faculty of Veterinary Medicine, and Utrecht University [Utrecht]

Subjects
Genotype, Introgression, Biology, Polymorphism, Single Nucleotide, amplified fragment length polymorphism, cattle, genetic diversity, introgression, zebu, Genetics, Animals, Cluster Analysis, Phylogeny, ComputingMilieux_MISCELLANEOUS, Genetic diversity, [SDV.GEN]Life Sciences [q-bio]/Genetics, Polymorphism, Genetic, General Medicine, Zebu, DNA Fingerprinting, Genetic marker, Evolutionary biology, Microsatellite, Cattle, Animal Science and Zoology, Amplified fragment length polymorphism, Genetic isolate, Microsatellite Repeats
Abstract

The Neolithic introduction of domestic cattle into Europe was followed by differential adaptation, selection, migration and genetic isolation, leading ultimately to the emergence of specialized breeds. We have studied the differentiation of European cattle by amplified fragment length polymorphism (AFLP) fingerprinting. Combining AFLP data sets from two laboratories yielded 81 biallelic polymorphic markers scored in 19-22 individual animals from 51 breeds. Model-based clustering differentiated Podolian cattle as well as French and Alpine breeds from other European cattle. AFLP genetic distances correlated well with microsatellite-based genetic distances calculated for the same breeds. However, the AFLP data emphasized the divergence of taurine and indicine cattle relative to the variation among European breeds and indicated an Eastern influence on Italian and Hungarian Podolian breeds. This probably reflects import from the East after the original introduction of domestic cattle into Europe. Our data suggest that Italian cattle breeds are relatively diverse at the DNA sequence level.

Published
2007
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3. The use of microsatellite genotyping for population studies in the pig with individual and pooled DNA samples

Author

Groenen, M.A.M., Joosten, R., Boscher, Marie Yvonne, Amigues, Yves, Rattink, A., Harlizius, B., van Der Poel, J.J., Crooijmans, R.P.M.A., Laboratoire d'Analyse Génétique pour les Espèces Animales (LABOGENA), Institut National de la Recherche Agronomique (INRA), and ProdInra, Migration

Subjects
[SDV] Life Sciences [q-bio], Microbiologie, [SDV]Life Sciences [q-bio], WIAS, Life Science, GENETIC DIVERSITY, Fokkerij en Genomica, MOLECULAR MARKERS, GENOTYPING, PIGS, Animal Breeding and Genomics, Microbiology, ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2003

4. Improving the comparative map of SSC2p-q13 by sample sequencing of BAC clones

Author

Rattink, A.P., Jungerius, B.J., Faivre, Martine, Chardon, Patrick, Harlizius, B., Groenen, M.A.M., ProdInra, Migration, Laboratoire de radiobiologie et d'étude du génome (LREG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de la Recherche Agronomique (INRA), and Institut National de la Recherche Agronomique (INRA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)

Subjects
BACKFAT THICKNESS, QTL, [SDV]Life Sciences [q-bio], igf2 locus, qtl, pigs, Animal Breeding and Genomics, RADIATION HYBRIDS, scale, [SDV] Life Sciences [q-bio], muscle mass, GENETIC MAPS, WIAS, COMPARATIVE GENETICS, Fokkerij en Genomica, PIGS, genome, mouse, ComputingMilieux_MISCELLANEOUS, HYBRIDE D'IRRADIATION
Abstract

To improve the comparative map for pig chromosome 2 and increase the gene density on this chromosome, a porcine bacterial artificial chromosome (BAC) library was screened with 17 microsatellite markers and 18 genes previously assigned to pig chromosome 2. Fifty-one BAC clones located in the region of a maternally imprinted quantitative trait locus for backfat thickness (BFT) were identified. From these BACs 372 kb were sample sequenced. The average read length of a subclone was 442 basepair (bp). Contig assembly analysis showed that every bp was sequenced 1.28 times. Subsequently, sequences were compared with sequences in the nucleotide databases to identify homology with other mammalian sequences. Sequence identity was observed with sequences derived from 35 BACs. The average percentage identity with human sequences was 87.6%, with an average length of 143 bp. In total, sample sequencing of all BACs resulted in sequence identity with 29 human genes, 13 human expressed sequence tags (ESTs), 17 human genomic clones, one rat gene, one porcine gene and nine porcine ESTs. Eighteen genes located on human chromosome 11 and 19, and seven genes from other human locations, one rat gene and one porcine gene were assigned to pig chromosome 2 for the first time. The new genes were added to the radiation hybrid map at the same position as the locus from which the BAC that was sequenced was derived. In total 57 genes were placed on the radiation hybrid map of SSC2p-q13.

Published
2001

5. A gene-dense comparative radiation hybrid map of porcine chromosome 2

Author

RATTINK, A.P., FAIVRE, Martine, Chardon, Patrick, JUNGERIUS, B.J., KEIJZER, L., Groenen, M.A.M., HARLIZIUS, B., ProdInra, Migration, Laboratoire de radiobiologie et d'étude du génome (LREG), Institut National de la Recherche Agronomique (INRA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de la Recherche Agronomique (INRA)

Subjects
[SDV] Life Sciences [q-bio], GENETIC MAPS, [SDV]Life Sciences [q-bio], PIGS, SSC2 CHROMOSOME, CHROMOSOME SSC2, RADIATION HYBRIDS, HYBRIDE D'IRRADIATION
Published
2001

6. Comparative mapping ot a region on pig chromosome 2 containing a QTL for backfat thickness

Author

Rattink, A.P., Harlizius, B., Chardon, Patrick, Faivre, Martine, Groenen, M.A.M., ProdInra, Migration, Laboratoire de radiobiologie et d'étude du génome (LREG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de la Recherche Agronomique (INRA), and Institut National de la Recherche Agronomique (INRA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)

Subjects
[SDV] Life Sciences [q-bio], BACKFAT THICKNESS, GENETIC MAPS, QTL, [SDV]Life Sciences [q-bio], COMPARATIVE GENETICS, PIGS, ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2000

7. Report of the first workshop on the genetic map of bovine chromosome 1

Author

Taylor, J.F., Eggen, Andre, Aleyasin, A., Armitage, S.M., Barendse, W., BEEVER, J.E., BISHOP, M.D., Brenneman, R.A., Burns, B.M., Davis, S.K., ELO, K., HARLIZIUS, B., Kappes, S.M., Keele, J.W., Kemp, S.J., Kirkpatrick, B.W., Lewin, H.A., Ma, R.Z., McGraw, R.A., POMP, D., STONE, R.T., Sugimoto, Y., Teale, A.J., Vaiman, Daniel, Vilkki, J., ProdInra, Migration, Unité de recherche Génétique Biochimique et Cytogénétique (LGBC), and Institut National de la Recherche Agronomique (INRA)

Subjects
[SDV.GEN]Life Sciences [q-bio]/Genetics, [SDV.GEN] Life Sciences [q-bio]/Genetics
Abstract

1 tables 2 graph.; International audience

Published
1998

8. A genetic linkage map of the bovine genome II

Author

Barendse, W., Vaiman, Daniel, Kemp, S.J., Sugimoto, Y., Armitage, S., Williams, J.L., Sun, H.S., Eggen, Andre, Agaba, M., Aleyasin, A., Band, M., Bishop, M.D., Buitkamp, J., Byrne, K., Collins, F., Cooper, Laurel, Coppieters, Wouter, Denis, Bruno, Drinkwater, R.D., Easterday, K., Ennis, S., Erhardt, Georg Jakob, Ferretti, L., Gao, Q., Georges, M., Gurung, R., Harlizius, B., Hawkins, G.A., Hetzel, J., Hirano, T., Hulme, D., Jorgensen, C.B., Kessler, Mathilde, Kirkpatrick, B.W., Konfortov, B., Kuhn, C., Lenstra, J.A., Levéziel, Hubert, Lewin, H.A., Leyhe, B., Li, L., Martin Burriel, I., Mcgraw, R.A., Miller, Rachel, Moody, D., Moore, S., Nakane, S., Nijman, I.J., Olsaker, I., Pomp, D., Rogers, M., Rando, A., Ron, M., Soller, M., Teale, A.J., Thieven, U., Urquhart, B.G.D., Vage, D., van de Weghe, A., Varvio, S., Velmalla, R., Vilkki, J., Weikard, R., Woodside, C., Womack, J., Zanotti, M., Zaragoza, P., ProdInra, Migration, Unité de recherche Génétique Biochimique et Cytogénétique (LGBC), and Institut National de la Recherche Agronomique (INRA)

Subjects
[SDV] Life Sciences [q-bio], [SDV]Life Sciences [q-bio], ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
1996

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