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Microorganisms play a crucial role in biogeochemical processes affecting the primary production and biogeochemical cycles of the ocean. In subpolar areas, the increment of the water temperature induced by climate change could lead to changes in the structure and activity of planktonic microbial communities. To understand how the structure of the microbial community in Chilean Patagonian fjords could be affected by climate change, we analyzed the composition of the prokaryotic community (bacteria-archaea) in two fjords (Pia and Yendegaia) with contrasting morphological and hydrological features. We targeted both the standing stock (16S rRNA genes) and the active fraction (16S rRNA transcripts) of the microbial communities during two consecutive austral winters. Our results showed that in both fjords, the active community had higher diversity and stronger biogeographic patterns when compared to the standing stock. Members of the Alpha-, Gamma-, and Deltaproteobacteria followed by archaea from the Marine Group I (Thaumarchaeota) dominated the active communities in both fjords. However, in Pia fjord, which has a marine-terminating glacier, the composition of the microbial community was directly influenced by the freshwater discharges from the adjacent glacier, and indirectly by a possible upwelling phenomenon that could bring deep sea bacteria such as SAR202 to the surface layer. In turn, in the Yendegaia, which has a land-terminating glacier, microbial communities were more similar to the ones described in oceanic waters. Furthermore, in Yendegaia fjord, inter-annual differences in the taxonomic composition and diversity of the microbial community were observed. In conclusion, Yendegaia fjord, without glacier calving, represents a fjord type that will likely be more common under future climate scenarios. Our results showing distinct Yendegaia communities, with for example more potential nitrogen-fixing microorganisms (Planctomycetes), indicate that as a result of climate change, changing planktonic communities could potentially impact biogeochemical processes and nutrient sources in subantarctic fjords.

We investigated the distribution of microplastics in the water column along a large remote estuarine system located between the Northern and Southern Patagonian Ice Fields in Chilean Patagonia, and connected with the Pacific Ocean through the Gulf of Penas. Microplastic particles were found in all samples, with abundances ranging from 0.1 to 7 particles/m3. Polymers identified were principally acrylics, PET, and cellophane. The average abundance of microplastics in surface waters was similar along the whole estuary (0.4 ± 0.3 particles/m3) with acrylics and epoxy resins being more abundant near Caleta Tortel, the only small village in the area. The observed higher abundance of microplastics in the deeper waters towards the Gulf of Penas points to intrusions of subsurface waters transporting plastic particles from the ocean into the channel system. This underlines the potential of ocean currents in transporting plastic pollution into pristine fjords and channels in Chilean Patagonia.

Chromophoric dissolved organic matter (CDOM) is a biologically active component of dissolved organic matter that influences the optical properties of aquatic environments, thereby playing an important role in the photochemical and photobiology processes occurring in the euphotic layer. Three cruises were carried out at three contrasting oceanographic areas off central and southern Chile (36.8°S, 44.6°S, 54.9°S) between November 2013 and July 2017 in order to assess the variability of the CDOM pool's optical properties (a325, SCDOM, SR). Marked differences, including vertical variability, were found for a325, SCDOM, and SR within and among each of the three zones, although surface DOC concentrations remained constant at all sites (87.59 ± 26.04 µmol L−1). At the coastal area close to the Biobio River (36.8°S), a325 values varied between 0.26–1.93 m−1 with maximum measured in surface waters. For the Puyuhuapi fjord in northern Patagonia (44.6°S), a325 ranged between 0.69 and 3.86 m−1, while in the Beagle Channel (54.9°S) it oscillated between 0.59 and 1.73 m−1. We identified the terrestrial organic matter input to surface waters as the main factor influencing surface CDOM concentrations in central Chile. In the Puyuhuapi fjord, terrestrial influence was heterogeneous because of its seasonal variability of the Channel but it was overall less significant than in situ produced CDOM. We also observed the lowest contribution of terrestrial CDOM inputs compared to the in situ production in southern Patagonia (Beagle Channel). We observed that the distribution of CDOM is potentially dominated by biological in situ production below the surface freshwater-influenced layer in the southern area while highly influenced by terrestrial input in the coastal upwelling area at 36°S. Overall, this study shows that the optical properties of dissolved organic matter (mainly SR) can be suitable for identifying different CDOM pools in coastal areas of contrasting oceanographic conditions. In stratified systems, freshwater inputs determine the distribution of surface CDOM while in well-mixed conditions, the in situ production determine the general CDOM concentration.

Composition, carbon and nitrogen uptake, and gene transcription of microbial mat communities in Porcelana neutral hot spring (Northern Chilean Patagonia) were analyzed using metagenomics, metatranscriptomics and isotopically labeled carbon (H13CO3) and nitrogen (15NH4Cl and K15NO3) assimilation rates. The microbial mat community included 31 phyla, of which only Cyanobacteria and Chloroflexi were dominant. At 58°C both phyla co-occurred, with similar contributions in relative abundances in metagenomes and total transcriptional activity. At 66°C, filamentous anoxygenic phototrophic Chloroflexi were >90% responsible for the total transcriptional activity recovered, while Cyanobacteria contributed most metagenomics and metatranscriptomics reads at 48°C. According to such reads, phototrophy was carried out both through oxygenic photosynthesis by Cyanobacteria (mostly Mastigocladus) and anoxygenic phototrophy due mainly to Chloroflexi. Inorganic carbon assimilation through the Calvin–Benson cycle was almost exclusively due to Mastigocladus, which was the main primary producer at lower temperatures. Two other CO2 fixation pathways were active at certain times and temperatures as indicated by transcripts: 3-hydroxypropionate (3-HP) bi-cycle due to Chloroflexi and 3-hydroxypropionate-4-hydroxybutyrate (HH) cycle carried out by Thaumarchaeota. The active transcription of the genes involved in these C-fixation pathways correlated with high in situ determined carbon fixation rates. In situ measurements of ammonia assimilation and nitrogen fixation (exclusively attributed to Cyanobacteria and mostly to Mastigocladus sp.) showed these were the most important nitrogen acquisition pathways at 58 and 48°C. At 66°C ammonia oxidation genes were actively transcribed (mostly due to Thaumarchaeota). Reads indicated that denitrification was present as a nitrogen sink at all temperatures and that dissimilatory nitrate reduction to ammonia (DNRA) contributed very little. The combination of metagenomic and metatranscriptomic analysis with in situ assimilation rates, allowed the reconstruction of day and night carbon and nitrogen assimilation pathways together with the contribution of keystone microorganisms in this natural hot spring microbial mat.

International audience; The high production levels of the Chilean salmon farming industry have resulted in the emergence of several diseases that affect all stages of development of cultured species. The parasitic copepod Caligus rogercresseyi is considered a potential vector of pathologies, and different chemical compounds such as pyrethroids and organophosphates have been used to prevent and control sea lice outbreaks. In this study, the effect of azametiphos, deltamethrin, and emamectin benzoate on the larval stages of the mussel Choromytilus chorusand the sea-urchins Sphaerechinus granularis and Paracentrotus lividuswas explored. No effects were found in the final larval development of C. chorus(D larvae). However, the trochophore development seemed accelerated in the presence of pesticides compared to the control larvae. In the case of P. lividus and S. granularis, exposure to all pesticides caused an increase in the rate of abnormal larval development compared to the control.

Relevant findings on hydrogen adsorption and mobility are provided in this work to elucidate the mechanism of low-temperature ammonia synthesis, catalyzed by polydispersed Ru nanoparticles supported on alumina. H/D isotopic exchange technique, complemented by DRIFTS analysis, was applied to study the kinetics of hydrogen adsorption/desorption on metallic Ru and hydrogen diffusivity on alumina, for catalysts presenting different size distributions of Ru nanoparticles. H atoms adsorbed on large Ru nanoparticles present higher mobility and they migrate on alumina via exchange with OH groups. A broad size distribution of Ru nanoparticles leads to synergy in the rate of ammonia synthesis, and also in hydrogen mobility. The mechanism of catalytic cooperation involves transfer of H atoms from large to small nanoparticles, where the reaction rate is promoted. Considering dynamic catalytic processes in the formulation of kinetic models is crucial for a more accurate description of processes and the development of large-scale processes.

International audience; We investigated the production of ammonium by the photodegradation of dissolved organic matter (DOM) in the coastal upwelling system off central Chile (36uS). The mean penetration of solar radiation (Z1%) between April 2011 and February 2012 was 9.4 m, 4.4 m and 3.2 m for Photosynthetically Active Radiation (PAR; 400–700 nm), UV-A (320–400 nm) and UV-B (280–320 nm), respectively. Ammonium photoproduction experiments were carried out using exudates of DOM obtained from cultured diatom species (Chaetoceros muelleri and Thalassiosira minuscule) as well as natural marine DOM. Diatom exudates showed net photoproduction of ammonium under exposure to UVR with a mean rate of 0.5660.4 mmol L 21 h 21 and a maximum rate of 1.49 mmol L 21 h 21. Results from natural marine DOM showed net photoproduction of ammonium under exposure to PAR+UVR ranging between 0.06 and 0.2 mmol L 21 h 21. We estimated the potential contribution of photochemical ammonium production for phytoplankton ammonium demand. Photoammonification of diatom exudates could support between 117 and 453% of spring-summer NH 4 + assimilation, while rates obtained from natural samples could contribute to 50–178% of spring-summer phytoplankton NH 4 + requirements. These results have implications for local N budgets, as photochemical ammonium production can occur year-round in the first meters of the euphotic zone that are impacted by full sunlight.

International audience; Ru/gamma-Al2O3 catalysts were prepared using three different methods: wet impregnation, colloidal method and microemulsion. Ru-supported nanoparticles with different average sizes and distribution of sizes were obtained. The catalysts were tested in ammonia synthesis under mild reaction conditions, namely low temperature (100 degrees C) and low pressure (4 bar), and characterized by N-2 adsorption, XRD, XPS, TEM and TPR techniques. The results indicate that a good catalytic performance can be achieved by Ru supported nanoparticles fulfilling two requirements: (i) a relatively high average size (despite the usual assertion that only small particles are required) and (ii) a broad distribution of sizes that ensures the presence of both small particles, containing highly active sites, and large nanoparticles, which are shown to promote the reaction on small particles. This promotion results from a cooperative effect between small and large nanoparticles in good contact, which also allows keeping a highly reduced surface of ruthenium. It is proposed that, under mild reaction conditions, large Ru nanoparticles promote the ammonia synthesis reaction by allowing a more effective activation and transfer of hydrogen atoms, able to hydrogenate strongly adsorbed nitrogen atoms, and thus to release active sites for the activation of N2. (c) 2013 Elsevier B.V. All rights reserved.

The flux of organic material sinking to depth is a major control on the inventory of carbon in the ocean. To first order, the oceanic system is at equilibrium such that what goes down must come up. Because the export flux is difficult to measure directly, it is routinely estimated indirectly by quantifying the amount of phytoplankton growth, or primary production, fuelled by the upward flux of nitrate. To do so it is necessary to take into account other sources of biologically available nitrogen. However, the generation of nitrate by nitrification in surface waters has only recently received attention. Here we perform the first synthesis of open-ocean measurements of the specific rate of surface nitrification and use these to configure a global biogeochemical model to quantify the global role of nitrification. We show that for much of the world ocean a substantial fraction of the nitrate taken up is generated through recent nitrification near the surface. At the global scale, nitrification accounts for about half of the nitrate consumed by growing phytoplankton. A consequence is that many previous attempts to quantify marine carbon export, particularly those based on inappropriate use of the f-ratio (a measure of the efficiency of the 'biological pump'), are significant overestimates.

International audience

Zooplankton are important suppliers of bioreactive compounds for marine bacteria through fecal pellet production, sloppy feeding and excretion of dissolved compounds. However, the interaction between zooplankton metabolism and microbial loop is poorly understand. Based on experimental approach we determine the role of zooplankton in the recycling of N and P in the central/southern Chile and in western tropical south pacific (WTSP). DON was the main excretion product under autumn/winter conditions, and ammonium and DOP in spring/summer in central/southern Chile. in the autumn/winter ammonium was rapidly consumed by microbial community and this consumption coincided with increased archaea and bacteria ammonia-oxidizing amoA transcript copies in copepods fed with the larger-sized fraction, whereas a different microbial community, probably heterotrophic, reacted to the input by copepods fed with the smaller-sized fraction. During spring/summer a shift in the composition of active bacterial community was associated with the response of common-opportunistic seawater surface phyla, Proteobacteria and Bacteroidetes. In the WTSP, copepods contributed elevated levels of ammonium, DON and DOP. Copepod excretion can enhance the remineralization process and reshape the composition of the active bacterial community, characterized by shifts in Alteromonadales and SAR11. We concluded that N and P excreted by copepods can be used directly by microbial community, including nitrifying ones, providing significant remineralized N for sustaining new and regenerated production in the upper ocean of different marine ecosystems., Le zooplancton est un important fournisseur de composés bioréactifs pour les bactéries par l’excrétion. Cependant, l'interaction entre le zooplancton et la boucle microbienne est mal comprise. Sur la base d'une approche expérimentale, nous déterminons le rôle du zooplancton dans le recyclage de N et du P dans la région d'upwelling du chili et dans le pacifique sud tropical occidental (WTSP). Le DON est le principal produit d’excrétion dans des conditions automne/hiver, et l'ammonium et la DOP au printemps/été dans le centre-sud du chili. En automne/hiver, l'ammonium a été rapidement consomme par la communauté microbienne coïncida avec une augmentation des copies de transcription d'archaeal et bactéries ammonium oxydatrices, alors qu'une communauté microbienne différente, probablement hétérotrophique, a réagi a l’entrée d'azote par excrétion par des copépodes nourris avec une fraction de taille réduite. Au cours du printemps/ete, un changement dans la composition de la communaute bacterienne active a été associe a la réponse du phylum bactérien opportuniste Proteobacteria et Bacteroidetes. Dans le WTSP, les copépodes contribués d'ammonium, de DON et de DOP. L'excrétion de copépodes peut améliorer le processus de reminéralisation et moduler la composition de la communauté bactérienne active, caractérisée par des changements dans Alteromonadales et SAR11. Nous concluons que l'azote et le phosphore excrétés par copépodes peuvent être utilises directement par des communautés microbiennes, y compris des nitrifiants, fournissant de N reminéralisé pour soutenir la production nouvelle et régénérée dans l'océan supérieur des différents écosystèmes marins.