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Climate change and overfishing have led to the degradation of the quality and stock of Pampus echinogaster. Exploring the genetic structure and local adaptive evolutionary mechanisms of P. echinogaster is crucial for the management of this species. This population genomic study of nine geographical populations of P. echinogaster in China was conducted by specific-locus amplified fragment sequencing (SLAF-seq). A total of 935,215 SLAF tags were obtained, and the average sequencing depth of the SLAF tags was 20.80×. After filtering, a total of 46,187 high-consistency genome-wide single nucleotide polymorphisms (SNPs) were detected. Based on all SNPs, the population size of the nine P. echinogaster geographical populations was large. The Shantou population had the lowest genetic diversity, and the Tianjin population had the highest. Moreover, the population genetic structure based on all SNPs revealed significant gene exchange and no significant genetic differentiation among the nine P. echinogaster geographical populations, probably because of the population expansion after the last glacial period, the lack of balance between migration and genetic drift, and the long-distance diffusion of eggs and larvae. We suspect that variation of material metabolism, ion transfer, breeding, stress response, and inflammatory reactions-related genes were critical for adaptation to spatially heterogeneous temperature selection in natural P. echinogaster populations.

Fisheries management policies (FMPs) have been implemented in coastal countries to ensure a sustainable supply of seafood and the recovery of species diversity. Because of the depletion of fishery stocks, China has introduced a series of FMPs since 1995, including a seasonal fishing moratorium (SFM), a zero-growth strategy, and a minimum mesh size for fishing nets. Here, we built two mass balance models for 1997–2000 (M1997) and 2018–2019 (M2018) using Ecopath with Ecosim 6.6 to illustrate the interannual changes over the past two decades in the East China Sea (ECS). We then simulated two dynamic scenarios from 1997 to 2018, SFM (M2018SFM) and no SFM (M2018no-SFM), to test the role of the SFM under fishing pressure in the ECS. Ecopath showed that the ECS ecosystem is becoming more mature, although it is still unstable, featuring lower total primary production/total respiration, longer cycles, faster organic material circulation speed, and a higher omnivorous degree. This suggests a slow recovery for the ECS ecosystem in the past two decades. The biomass of fish in the ECS—especially the planktivores, dominated by small-sized Benthosema pterotum—significantly increased in M2018 versus M1997, but there were fewer medium- and large-sized fish. The keystone species switched from the planktivores/piscivores dominated by Decapterus maruadsi in M1997 to planktivores in M2018. Ecosim illustrated that the SFM has positive effects on fishery resources recovery, especially for commercial fishes (i.e., large yellow croakers and hairtails), as reflected by the significantly higher predicted biomass of fish in M2018SFM compared to M2018no-SFM and M1997, although the bioaccumulation was consumed by the intense fishing pressure after the SFM. However, the M2018SFM prediction for nektons was still lower than the actual value, especially for planktivores, which display a sharp increase in biomass. This should be partly attributable to the policy of the minimum mesh size (B. pterotum due to its 3.5 cm maximum body size. Therefore, a series of FMPs, rather than only the SFM, functioned together in the ECS ecosystem. However, the mixed trophic impact indicated a negative impact if the fisheries were further developed. Fishery management in the ECS needs to be strengthened by extending the SFM and reducing fishing pressure after the SFM.

The Antarctic krill (Euphausia superba) fishery is the largest fishery in the Southern Ocean, and it has been operating for over 45 years. In the past decade, the spatial distribution of the krill fishery has focused on the Bransfield Strait off the Antarctic Peninsula (subarea 48.1). However, the high fishing effort and climate change have placed great pressure on krill resources in this region, and conservation concerns have been raised. Because aging krill is difficult and uncertain, we developed an integrated size-structured model to estimate the fishing mortality, recruitment and spawning biomass of krill. The results indicated that in 1992–2011, the average spawning biomass of krill ranged from 1.14 × 106 to 1.45 × 106 tons, the estimated biomass of the maximum sustainable yield (BMSY) ranged from 3.96 × 105 to 4.90 × 105 tons and the estimated average recruitment ranged from 2.3 × 1012 to 5.03 × 1012 individuals in the research area. We explored the effect of different data weighting schemes for the length data on the assessment output. However, our estimates also have uncertainties. In addition, an attempt was made to analyze the correlation between model-estimated recruitment and mature biomass with climate change. Future stock assessments of krill resources should be comprehensive and multimethod, and the management of krill resources should be based on science that considers the demand of fishing communities and ecosystem protection.

The Ninety East Ridge is a submarine north–south oriented volcanic ridge in the eastern Indian Ocean. Surface-layer ichthyoplankton collected in this area from September to October were identified by combined morphological and molecular (DNA barcoding) techniques, and their species composition, diversity, and abundance, and correlations with environmental variables were described. Collections comprised 109 larvae and 507 eggs, which were identified to 37 taxa in 7 orders, 20 families, and 27 genera, and were dominated by the order Perciformes and species Vinciguerria sp., Oxyporhamphus micropterus, and Decapterus macarellus. Species abundances at each station and of each species were relatively low, suggesting that this area or the time of sampling were not of major importance for fish spawning. Waters above Ninety East Ridge had lower species diversity but higher species richness than waters further offshore. A generalized additive model revealed that high abundance of ichthyoplanktonic taxa occurred in areas with low sea surface height and high sea surface salinity, temperature, and chlorophyll a concentration. Of these, sea surface height was most correlated with ichthyoplankton abundance. We provided baseline data on surface-dwelling ichthyoplankton communities in this area to aid in development of pelagic fishery resources in waters around the Ninety East Ridge.

High trophic plasticity is often invoked to explain the successful expansion of many aquatic species. Bombay duck (BD) outcompete other traditionally commercial fishes in the East China Sea (ECS) in recent years, displaying a continuous and sharp increase of catches, however, little is known whether the competition advantage of BD was related to its trophic plasticity. Using stable isotope analysis (SIA), we investigated the trophic ecology of BD in the south-central ECS in two periods. Significant differences in δ13C and δ15N values were found between sampling months and among body sizes. Modal (95% credibility limits) estimation showed that BD’s trophic position (TP) gradually increased from 3.56 (3.31–3.82) in G1 (120–150 mm for body size) to 4.09 (3.69–4.50) in G5 (241–270 mm) in November, and from 3.37 (2.92–3.88) in G2 (151–180 mm) to 3.66 (3.07–4.23) in G4 (211–240 mm) in April, respectively, suggesting obvious ontogenetic variation of δ15N and TP. More importantly, the TP of BD within the same body size showed wide amplitude, indicating BD possess high trophic plasticity, and can capture prey from low to high trophic levels. Further quantitative analysis based on the MixSIAR model showed that BD mainly fed on zooplankton and fish, but its feeding habit was characterized by the consumption of gradually reduced zooplankton and increased fish associated with increased body size. Interestingly, the fish’s contribution to BD showed obvious seasonal variation. It can be explained by varied food availability in ECS. Relatively low fish prey in April forced BD to adjust its diet, adding the ingestion of shrimps and cephalopods corresponding to temporal variations in food availability. The present study provides the evidence that high trophic plasticity exists in the feeding strategy of BD, which is reflected in the ability to adjust the feeding preference according to nutritional needs and food environmental changes; thus, it is competitively advantageous and may partly explain why BD is becoming the predominant species and displays an extensive distribution in the ECS.