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The management and conservation of biodiversity relies on information on both the abundance of species and the potential impact of threats. Globally, one of the largest threats towards marine biodiversity is bycatch in fisheries. Under the Marine Strategy Framework Directive (MSFD), EU Member States are required to assess the status of species, such as the harbour porpoise (Phocoena phocoena), in relation to their abundance and mortality due to bycatch every six years. The Vulnerable (HELCOM) Belt Sea population of harbour porpoise has been surveyed to determine its abundance six times using dedicated aerial or shipbased line-transect distance sampling surveys. Here, we estimated the first trend in population abundance over an 18 year period (2005-2022). Using the most recent abundance estimate, we computed a mortality limit applying the modified Potential Biological Removal (mPBR) method based on the regionally agreed conservation objective to restore or maintain 80% of carrying capacity over 100 years with an 80% probability. Over the past 18 years there has been a strong negative trend (-2.7% p.a.; 95% CI: -4.1%; + 1.3%) in abundance, with a 90.5% probability. The mortality limit was estimated to be 24 animals, which the current bycatch estimates (~900 porpoises/year from the commercial Danish and Swedish set net fishery fleets, with no data from Germany and other fishery types) exceed by far. The frequency and quality of data available on abundance for this population are higher than those available for the majority of marine species. Given the observed population decline and likely unsustainable levels of bycatch, the results presented here provide a strong basis to make informed, evidence-based management decisions for action for this population. Such action is needed urgently, before the dire situation of other porpoise species and populations around the globe is repeated. [ABSTRACT FROM AUTHOR]

The "ACCOBAMS Survey Initiative" (ASI) is a pilot programme aimed at establishing an integrated and coordinated monitoring system for cetaceans across the Agreement on the Conservation of Cetaceans of the Black Sea, Mediterranean Sea and contiguous Atlantic (hereafter "ACCOBAMS") area. Conducted in coordination with Mediterranean coastal countries, it supports the implementation of European and regional policies, in particular the EU Marine Strategy Framework Directive and the Ecosystem Approach process. In summer 2018, a synoptic survey was conducted across the Mediterranean Sea and contiguous Atlantic area, combining visual monitoring from aircrafts with visual and passive acoustic monitoring from vessels. Species density and abundance were estimated through design-based approach in a line-transect sampling framework. Based on data arising from the aerial survey only, uncorrected design-based abundance was obtained for striped (N=426,744, CV=0.13), common (N=65,359, CV=0.4), bottlenose (N=63,333, CV=0.17), and Risso´s dolphins (N=26,006, CV=0.3), Cuvier's beaked whales (N=2,929, CV=0.4) and long-finned pilot whales (N=5,540 CV=0.4). A merged category of either striped or common dolphins resulted in 212,828 individuals (CV=0.26). Fin whales abundance of 1,749 animals (CV=0.3) was corrected for both availability and perception biases and resulted in 3,282 (CV=0.31). The ASI survey offers an overall picture of the distribution and abundance of cetaceans throughout the Mediterranean basin, providing robust estimates to be considered as a baseline for future regional systematic monitoring programmes. The ASI survey is the first step towards establishing a long-term monitoring program across the entire ACCOBAMS area, and, as such, it sets the basis for further future basin-wide monitoring efforts using systematic, shared, coordinated and comparable methods. The information gathered will further enhance knowledge on cetacean status, facilitating the development of informed conservation and mitigation measures, as well as supporting the implementation of international obligations. Furthermore, the outcomes of this survey will support both place- and threat-based conservation efforts in the ACCOBAMS area, through the identification of Important Marine Mammal Areas and Cetacean Critical Habitats. Here the results of the ASI survey are presented and discussed alongside proposed management and conservation actions aimed at ensuring the persistence of cetacean populations in the region. [ABSTRACT FROM AUTHOR]

Rapid changes of marine ecosystems resulting from human activities and climate change, and the subsequent reported rise of infectious diseases in marine mammals, highlight theurgency for timelydetectionof unusualhealtheventsnegatively affecting populations. Studies reportingpathological findings in thecommonly strandedharbor porpoise (Phocoena phocoena) on North Atlantic coastlines are essential to describe newandemergingcauses of mortality. However,suchstudies oftencannotbeused as long-term health surveillance tools due to analytical limitations. We tested 31 variables gained from stranding-, necropsy-, dietary-andmarine debris data from 405 harbor porpoises using applied supervised and unsupervisedmachine learning techniques to explore and analyze this large dataset. We classified and cross-correlated the variables and characterized the importance of the different variables for accurately predicting cause-of-death categories, to allow trend assessment for good conservation decision. The variable 'age class' seemed most influential in determining cause-ofdeath categories, and it became apparent that juveniles diedmore often due to acute causes, including bycatch, grey-seal-predation and other trauma, while adults of infectious diseases. Neonateswere found in summer, and mostly without prey in their stomach and more often stranded alive. The variables assigned as part of the external examinationof carcasses,suchas imprints from net sandlesionsinducedbypredators, as well as nutritional condition were most important for predicting cause-of-death categories,with a model prediction accuracyof 75%. Future porpoisemonitoring, and in particular the assessment of temporal trends, should predominantly focus on influential variables as determined in this study. Pathogen- and contaminant assessment data was not available for all cases, but would be an important step to further complete the dataset. This could be vital for drawing population-inferences and thus for long-term harbor porpoise population health monitoring as an early warning tool for population change. [ABSTRACT FROM AUTHOR]

Limiting disturbance in critical habitats is an important part of ensuring the well-being and sustainability of populations at risk, such as Cumberland Sound beluga whales (Delphinapterus leucas). Using non-disruptive Very High Resolution (VHR) satellite imagery, an emerging tool in cetacean monitoring, we aimed to estimate summer abundance and identify critical habitat for Cumberland Sound beluga whales. Specifically we looked in fiords that comprise their summer distribution, such as Clearwater Fiord where there is a large estuary, an important habitat to many beluga populations. Satellite images of the area were collected in 2020 and 2021, at 30 cm resolution, and in 2022 at 50 cm resolution. We evaluated beluga whale distribution using Kernel density, and identified critical habitats as areas consistently part of the beluga whale core distribution across years. Clearwater Fiord abundance estimates were corrected for whales that were too deep to be identified in the images. The estimates were significantly lower in 2021 (197 whales, 95%CI: 180-216) and 2022 (194 whales, 95%CI: 172-218) compared to 2020 (393 whales, 95%CI: 366-422). Other fiords were only imaged in 2021 and 2022, resulting in average corrected abundance estimates for all fiords of 462 (95% CI: 425-502) and 252 (95%CI: 226-280) beluga whales, respectively. Downsampling of 30 cm images to 50 cm resulted in up to 45% fewer whales detected. The only critical habitat identified within the summer distribution was in Clearwater Fiord, in or near the estuary freshwater plume and in a bay to the west of the plume. The identified critical habitats should be areas of consideration in the continued discussion on the protection and sustainability of the Cumberland Sound beluga whale population. [ABSTRACT FROM AUTHOR]

The ACCOBAMS Survey Initiative (ASI) is the first synoptic large-scale survey of the entire ACCOBAMS Area and as such it plays a key role in filling the current gaps in our biological and ecological knowledge of large vertebrate species occurring in the region. Data gathered during the ASI were analyzed in a distance sampling surface-modelling framework to assess the summer distribution, densities and patterns, as well as to investigate the correlates of these parameters, for large vertebrate species and taxa in the Mediterranean Basin. Static and dynamic explanatory variables, including water depth (m), distance to depth contours (km), distance to canyons and seabed slope (km), sea surface temperature (°C), mixed layer depth (m) and levels of chlorophyll-a (mg/l), were considered to predict density and compute its variance spatially at a resolution of 10x10 km. A strong longitudinal gradient from low densities in the east to high densities in the west is shared by most taxa. In addition, several taxa also showed a less marked latitudinal gradient varying in direction according to species, and finally, a few of them exhibited patchy distributions. [ABSTRACT FROM AUTHOR]

Developing offshore wind farms may impact cetaceans due to vessel collisions and underwater noise. Therefore, it is critical to protect cetaceans while developing offshore wind farms. We first studied the code of conduct/guidelines for whale watching and then interviewed members of the local whale-watching industry to learn about the interaction between cetaceans and vessels. After that, we compared current whale-watching guidelines in Taiwan with 69 published guidelines from other countries and locations, then developed guidelines for the offshore wind farm industry. The results show that rules related to approaching and interacting with cetaceans in Taiwan are similar to those in other countries. However, swimming with cetaceans and approaching calves are prohibited in Taiwan. From the survey of the whale-watching industry, most whale-watching guidelines in Taiwan were found to be feasible, and the guidelines should be described in the premise with different phenotypic traits of various cetaceans. Based on the whale-watching guidelines, we developed a code of conduct for protecting cetaceans from the impact of vessels, specifically in offshore wind farm operations in Taiwan. [ABSTRACT FROM AUTHOR]

The management and conservation of biodiversity relies on information on both the abundance of species and the potential impact of threats. Globally, one of the largest threats towards marine biodiversity is bycatch in fisheries. Under the Marine Strategy Framework Directive (MSFD), EU Member States are required to assess the status of species, such as the harbour porpoise (Phocoena phocoena), in relation to their abundance and mortality due to bycatch every six years. The Vulnerable (HELCOM) Belt Sea population of harbour porpoise has been surveyed to determine its abundance six times using dedicated aerial or ship-based line-transect distance sampling surveys. Here, we estimated the first trend in population abundance over an 18 year period (2005-2022). Using the most recent abundance estimate, we computed a mortality limit applying the modified Potential Biological Removal (mPBR) method based on the regionally agreed conservation objective to restore or maintain 80% of carrying capacity over 100 years with an 80% probability. Over the past 18 years there has been a strong negative trend (-2.7% p.a.; 95% CI: -4.1%; + 1.3%) in abundance, with a 90.5% probability. The mortality limit was estimated to be 24 animals, which the current bycatch estimates (~900 porpoises/year from the commercial Danish and Swedish set net fishery fleets, with no data from Germany and other fishery types) exceed by far. The frequency and quality of data available on abundance for this population are higher than those available for the majority of marine species. Given the observed population decline and likely unsustainable levels of bycatch, the results presented here provide a strong basis to make informed, evidence-based management decisions for action for this population. Such action is needed urgently, before the dire situation of other porpoise species and populations around the globe is repeated.

The “ACCOBAMS Survey Initiative” (ASI) is a pilot programme aimed at establishing an integrated and coordinated monitoring system for cetaceans across the Agreement on the Conservation of Cetaceans of the Black Sea, Mediterranean Sea and contiguous Atlantic (hereafter “ACCOBAMS”) area. Conducted in coordination with Mediterranean coastal countries, it supports the implementation of European and regional policies, in particular the EU Marine Strategy Framework Directive and the Ecosystem Approach process. In summer 2018, a synoptic survey was conducted across the Mediterranean Sea and contiguous Atlantic area, combining visual monitoring from aircrafts with visual and passive acoustic monitoring from vessels. Species density and abundance were estimated through design-based approach in a line-transect sampling framework. Based on data arising from the aerial survey only, uncorrected design-based abundance was obtained for striped (N=426,744, CV=0.13), common (N=65,359, CV=0.4), bottlenose (N=63,333, CV=0.17), and Risso´s dolphins (N=26,006, CV=0.3), Cuvier’s beaked whales (N=2,929, CV=0.4) and long-finned pilot whales (N=5,540 CV=0.4). A merged category of either striped or common dolphins resulted in 212,828 individuals (CV=0.26). Fin whales abundance of 1,749 animals (CV=0.3) was corrected for both availability and perception biases and resulted in 3,282 (CV=0.31). The ASI survey offers an overall picture of the distribution and abundance of cetaceans throughout the Mediterranean basin, providing robust estimates to be considered as a baseline for future regional systematic monitoring programmes. The ASI survey is the first step towards establishing a long-term monitoring program across the entire ACCOBAMS area, and, as such, it sets the basis for further future basin-wide monitoring efforts using systematic, shared, coordinated and comparable methods. The information gathered will further enhance knowledge on cetacean status, facilitating the development of informed conservation and mitigation measures, as well as supporting the implementation of international obligations. Furthermore, the outcomes of this survey will support both place- and threat-based conservation efforts in the ACCOBAMS area, through the identification of Important Marine Mammal Areas and Cetacean Critical Habitats. Here the results of the ASI survey are presented and discussed alongside proposed management and conservation actions aimed at ensuring the persistence of cetacean populations in the region.

Rapid changes of marine ecosystems resulting from human activities and climate change, and the subsequent reported rise of infectious diseases in marine mammals, highlight the urgency for timely detection of unusual health events negatively affecting populations. Studies reporting pathological findings in the commonly stranded harbor porpoise (Phocoena phocoena) on North Atlantic coastlines are essential to describe new and emerging causes of mortality. However, such studies often cannot be used as long-term health surveillance tools due to analytical limitations. We tested 31 variables gained from stranding-, necropsy-, dietary- and marine debris data from 405 harbor porpoises using applied supervised and unsupervised machine learning techniques to explore and analyze this large dataset. We classified and cross-correlated the variables and characterized the importance of the different variables for accurately predicting cause-of-death categories, to allow trend assessment for good conservation decision. The variable ‘age class’ seemed most influential in determining cause-of-death categories, and it became apparent that juveniles died more often due to acute causes, including bycatch, grey-seal-predation and other trauma, while adults of infectious diseases. Neonates were found in summer, and mostly without prey in their stomach and more often stranded alive. The variables assigned as part of the external examination of carcasses, such as imprints from nets and lesions induced by predators, as well as nutritional condition were most important for predicting cause-of-death categories, with a model prediction accuracy of 75%. Future porpoise monitoring, and in particular the assessment of temporal trends, should predominantly focus on influential variables as determined in this study. Pathogen- and contaminant assessment data was not available for all cases, but would be an important step to further complete the dataset. This could be vital for drawing population-inferences and thus for long-term harbor porpoise population health monitoring as an early warning tool for population change.

The ACCOBAMS Survey Initiative (ASI) is the first synoptic large-scale survey of the entire ACCOBAMS Area and as such it plays a key role in filling the current gaps in our biological and ecological knowledge of large vertebrate species occurring in the region. Data gathered during the ASI were analyzed in a distance sampling surface-modelling framework to assess the summer distribution, densities and patterns, as well as to investigate the correlates of these parameters, for large vertebrate species and taxa in the Mediterranean Basin. Static and dynamic explanatory variables, including water depth (m), distance to depth contours (km), distance to canyons and seabed slope (km), sea surface temperature (°C), mixed layer depth (m) and levels of chlorophyll-a (mg/l), were considered to predict density and compute its variance spatially at a resolution of 10x10 km. A strong longitudinal gradient from low densities in the east to high densities in the west is shared by most taxa. In addition, several taxa also showed a less marked latitudinal gradient varying in direction according to species, and finally, a few of them exhibited patchy distributions.

The present study was undertaken to address the recent spate of pasteurellosis outbreaks among sea-farmed Atlantic salmon (Salmo salar) in Norway and Scotland, coinciding with sporadic disease episodes in lumpfish (Cyclopterus lumpus) used for delousing purposes in salmon farms. Genome assemblies from 86 bacterial isolates cultured from diseased salmon or lumpfish confirmed them all as bona fide members of the Pasteurellaceae family, with phylogenetic reconstruction dividing them into two distinct branches sharing <88% average nucleotide identity. These branches therefore constitute two separate species, namely Pasteurella skyensis and the as-yet invalidly named "Pasteurella atlantica". Both species further stratify into multiple discrete genomovars (gv.) and/or lineages, each being nearly or fully exclusive to a particular host, geographic region, and/or time period. Pasteurellosis in lumpfish is, irrespective of spatiotemporal origin, linked almost exclusively to the highly conserved "P. atlantica gv. cyclopteri" (Pac). In contrast, pasteurellosis in Norwegian sea-farmed salmon, dominated since the late-1980s by "P. atlantica gv. salmonicida" (Pas), first saw three specific lineages (Pas-1, -2, and -3) causing separate, geographically restricted, and short-lived outbreaks, before a fourth (Pas-4) emerged recently and became more widely disseminated. A similar situation involving P. skyensis (Ps) has apparently been unfolding in Scottish salmon farming since the mid-1990s, where two historic (Ps-1 and -2) and one contemporary (Ps-3) lineages have been recorded. While the epidemiology underlying all these outbreaks/epizootics remains unclear, repeated detection of 16S rRNA gene amplicons very closely related to P. skyensis and "P. atlantica" from at least five cetacean species worldwide raises the question as to whether marine mammals may play a part, possibly as reservoirs. In fact, the close relationship between the studied isolates and Phocoenobacter uteri associated with harbor porpoise (Phocoena phocoena), and their relatively distant relationship with other members of the genus Pasteurella, suggests that both P. skyensis and "P. atlantica" should bemoved to the genus Phocoenobacter. [ABSTRACT FROM AUTHOR]

Introduction: The bottlenose dolphin (Tursiops truncatus) is an intermittent breather, where the breath begins with an exhalation followed by inhalation and an extended inter-breath interval ranging from 10 to 40 s. Breathing has been shown to alter both the instantaneous heart rate (ifH) and stroke volume (iSV) in the bottlenose dolphin, with a transitory ventilatory tachycardia following the breath, and an exponential decrease to a stable ifH around 40 beats ⋅ min-1 during the inter-breath period. As the total breath duration in the dolphin is around 1 s, it is not possible to assess the contribution of exhalation and inhalation to these changes in cardiac function during normal breathing. Methods: In the current study, we evaluated the ifH response by separating expiration and inspiration of a breath, which allowed us to distinguish their respective contribution to the changes in ifH. We studied 3 individual male bottlenose dolphins trained to hold their breath between the different respiratory phases (expiration and inhalation). Results: Our data show that inspiration causes an increase in ifH, while expiration appears to result in a decrease in ifH. Discussion: These data provide improved understanding of the cardiorespiratory coupling in dolphins, and show how both exhalation and inhalation alters ifH. [ABSTRACT FROM AUTHOR]

This document summarizes a collection of 14 research papers focused on various threats to marine mammals in the Mediterranean Sea. The studies cover topics such as depredation and bycatch of dolphins in fisheries, social dynamics of bottlenose dolphins near the River Tiber estuary, ship strikes on fin whales in the Catalan coast, contamination from plastic debris, and bacterial infections in cetaceans. The research provides valuable information for implementing mitigation strategies and conservation efforts to protect marine mammals in the region. [Extracted from the article]

Southern Hemisphere humpback whales (Megaptera novaeangliae) were heavily targeted during modern commercial whaling operations, with some 216,000 individuals killed between 1903 and 1973. That impacted the abundance of all the seven breeding stocks of the species. Most of these stocks have been recovering from whaling pressure although the understanding of the current growth rates of some stocks, and how the rates compare across stocks are lacking. Updated information is fundamental for understanding the species’ current status, and to support the review of management plans promoting its protection and recovery, especially considering current changes in ocean environments due to climate change. This work offers a comprehensive overview of the current knowledge on Southern Hemisphere humpback whales breeding stocks’ status. The aim is to provide information on their post-whaling growth trends and changes in distribution and migration patterns. Within that, records of supplementary feeding records (i.e. feeding beyond their formally described feeding grounds) are described. We have also identified knowledge gaps and note that the establishment of research collaborations, as well as standard methodologies for data collection can be important steps for the acquisition of better comparable data sets for the analysis of the current status of humpback whales and to fill such gaps. The compiled information provided can be used as part of an In-Depth Assessment of the species by the International Whaling Commission.

Introduction: The bottlenose dolphin (Tursiops truncatus) is an intermittent breather, where the breath begins with an exhalation followed by inhalation and an extended inter-breath interval ranging from 10 to 40 s. Breathing has been shown to alter both the instantaneous heart rate (ifH) and stroke volume (iSV) in the bottlenose dolphin, with a transitory ventilatory tachycardia following the breath, and an exponential decrease to a stable ifH around 40 beats • min−1 during the inter-breath period. As the total breath duration in the dolphin is around 1 s, it is not possible to assess the contribution of exhalation and inhalation to these changes in cardiac function during normal breathing.Methods: In the current study, we evaluated the ifH response by separating expiration and inspiration of a breath, which allowed us to distinguish their respective contribution to the changes in ifH. We studied 3 individual male bottlenose dolphins trained to hold their breath between the different respiratory phases (expiration and inhalation).Results: Our data show that inspiration causes an increase in ifH, while expiration appears to result in a decrease in ifH.Discussion: These data provide improved understanding of the cardiorespiratory coupling in dolphins, and show how both exhalation and inhalation alters ifH.

Multiple techniques have been used for estimating age in bottlenose dolphins (Tursiops truncatus). The longest established technique is via counts of growth later groups (GLGs) in the longitudinal section of an extracted mandibular tooth. Previous studies to validate GLGs have primarily used younger dolphins (less than 16yrs old) due to the limited number of known age older animals. This study assessed the accuracy of age estimates for bottlenose dolphins using both GLG analysis and a newer technique, pectoral flipper radiography (PFR) for dolphins ranging from 0 to 58yrs, with a majority of samples (70%) over 16yrs. GLGs were assessed by two expert independent readers on tooth sections from 52 different dolphins (85% over 16yrs, maximum age 58yrs), and assessments of PFRs were performed by two experienced veterinarians on 37 dolphins (54% over 16yrs, maximum age 54yrs). Results demonstrated both techniques became less accurate in older dolphins, particularly those > 30yrs, with errors as large as 37yrs for GLG estimates. The root mean squared error (RMSE) for age estimation using GLGs for dolphins ≤15 years of age was 1.46yrs compared to 1.58yrs using PFRs demonstrating the accuracy of both techniques in this age bracket. For dolphins >30yrs, RMSE increased to 17yrs in GLG aging and 8.25yrs in PFR. Challenges in obtaining accurate age estimates in GLGs were primarily due to sectioning and staining difficulties in visualizing the newest GLG layers, in the very old animals. Complications in reading the layers included obtaining a good section, the presence of accessory layers, GLG compression, and tooth curvature or wear removing the neonatal line influencing aging biases. In pectoral flipper aging, the primary challenge was obtaining a true dorsoventral radiograph in a live dolphin during a health assessment, as well as the subjective assessment of scoring and reliance on degenerative changes accurately estimate age in geriatric dolphins. While access to the radiography equipment can be a limiting factor, the improved accuracy for age estimation in adult dolphins, the less invasive nature, and reduced processing time to results make pectoral radiography a preferred alternative technique for estimating age in live dolphins.

We delineated and scored Biologically Important Areas (BIAs) in the Arctic region. The Arctic region extends from the Bering Strait to the Chukchi Sea, Beaufort Sea, Amundsen Gulf, and Viscount Melville Sound. This NOAA-led effort uses structured elicitation principles to build upon the first version of NOAA BIAs (BIA I) for cetaceans. In addition to narratives, maps, and metadata tables, BIA II products incorporated a scoring and labeling system to improve their utility and interpretability. BIAs are compilations of the best available science and have no inherent regulatory authority. They have been used by NOAA, other federal agencies, and the public to support marine spatial planning and marine mammal impact assessments, and to inform the development of conservation measures for cetaceans. Supporting evidence for Arctic BIA II came from data derived from aerial-, land-, and vessel-based surveys; satellite telemetry; passive acoustic monitoring; Indigenous knowledge; photo-identification; aboriginal subsistence harvests, including catch and sighting locations and stomach contents; and prey studies. BIAs were identified for bowhead (Balaena mysticetus), gray (Eschrichtius robustus), humpback (Megaptera novaeangliae), fin (Balaenoptera physalus), and beluga (Delphinapterus leucas) whales. In total, 44 BIAs were delineated and scored for the Arctic, including 12 reproduction, 24 feeding, and 8 migration BIAs. BIAs were identified in all months except January-March. Fifteen candidate areas did not have sufficient information to delineate as BIAs and were added to a watch list for future consideration in the BIA process. Some BIAs were transboundary between the Arctic region and the Aleutian Islands-Bering Sea region. Several BIAs were transnational, extending into territorial waters of Russia (in the Chukchi Sea) and Canada (in the Beaufort Sea), and a few BIAs were delineated in international waters.

The first cetacean circovirus, beaked whale circovirus (BWCV), was recently reported in a Longman’s beaked whale (Indopacetus pacificus) stranded in Hawai‘i and represents an emergent disease with unknown population impacts. In other species, circovirus infection may cause mortality or opportunistic co-infection by other pathogens. We report on a targeted surveillance of stranded cetaceans in the Pacific basin, including archived beaked whale species, strandings where pathological findings suggested disease presence, mass stranded animals, and additional individuals to represent a broad range of Hawaiian cetacean species. Archived tissues primarily from the brain, kidney, liver, lung, spleen, and lymph nodes of individuals stranded between 2000 and 2020 (n=30) were tested by PCR for the presence of BWCV. Suspect positive tissue amplicons were confirmed as BWCV through sequencing. Of the screened individuals, 15 animals tested positive in one or more tissues, with a single striped dolphin (Stenella coeruleoalba) testing positive in all six tissues. The highest rate of detection among positive cases was found in the brain (69%), followed by lymph (67%) and lung tissues (64%). Additionally, co-infections of cetacean morbillivirus (n=3), Brucella ceti (n=1), and Toxoplasma gondii (n=1) were found among the positive cases. These results expand the potential host range for BWCV into ten additional odontocete species. New host species include a dwarf sperm whale (Kogia sima) that stranded on O‘ahu in 2000, predating the initial case of BWCV. The results broaden the known geographic range of BWCV to Saipan in the Western Pacific, and American Samoa in the South Pacific, where stranded Cuvier’s beaked whales (Ziphius cavirostris) tested positive. Although the clinical significance is currently unknown, this study demonstrates that BWCV has a high prevalence within targeted cetacean screening efforts. Infectious diseases pose a major threat to cetaceans and BWCV may represent an important emerging disease within populations spanning the central, Western, and South Pacific.

Bottlenose dolphins have a complex vocal repertoire that varies depending on behavioral context, social structure, group composition, and anthropogenic pressures. This current study describes the whistle characteristics of bottlenose dolphins for the first time in the South Adriatic Sea while assessing the potential differences between whistle characteristics of geographically separated dolphins within neighbouring waters of the North Ionian Sea. The results show that whistle characteristics were similar between Taranto Gulf (Italy) and Boka Bay (Montenegro), despite their spatial differences. The mean peak frequency was 10kHz for each study location while the mean minimum and maximum frequency ranged from 7 to 14kHz. The average duration of whistles was 500 milliseconds. These results share similarities with previous literature, although several studies reported slightly different mean peak frequencies, ranging up to 15kHz in the neighbouring waters of Croatia and Italy. Further, harmonics were produced and formed in 40% of the whistles in Taranto Gulf and 30% of the whistles in Boka Bay. A high incidence of harmonics has previously been associated with behavioral states (i.e., travelling) and with certain types of marine traffic (i.e., fishing vessels). Therefore, it is important to collect simultaneous data on the visual behavior of the focal group as well as document the type and density of marine traffic within the proximity of the dolphins to have an in-depth understanding of vocal behavior. Despite the similarities of whistle characteristics of Taranto and Boka Bay, the whistle contours showed notable variations. Upsweep whistles were the most regularly produced whistle type in each location, which coincides with previous studies in the Mediterranean Sea. However, the least produced whistle had a concave contour in Taranto and was flat in Boka Bay. Previous studies have confirmed that flat whistles account for the least produced whistle contour in the Mediterranean Basin. Examining the whistle characteristics and the variation in whistle contours provides an in-depth understanding of the behavioral complexity as well as its plasticity in the presence of pressure. Therefore, future studies need to include behavior, group composition, noise levels, and human presence to enable an effective understanding of variation in whistle characteristics of bottlenose dolphins.

Monitoring wildlife populations over scales relevant to management is critical to supporting conservation decision-making in the face of data deficiency, particularly for rare species occurring across large geographic ranges. The Pilbara region of Western Australia is home to two sympatric and morphologically similar species of coastal dolphins—the Indo-pacific bottlenose dolphin (Tursiops aduncus) and Australian humpback dolphin (Sousa sahulensis)—both of which are believed to be declining in numbers and facing increasing pressures from the combined impacts of environmental change and extensive industrial activities. The aim of this study was to develop spatially explicit models of bottlenose and humpback dolphin abundance in Pilbara waters that could inform decisions about coastal development at a regional scale. Aerial line transect surveys were flown from a fixed-wing aircraft in the austral winters of 2015, 2016, and 2017 across a total area of 33,420 km2. Spatio-temporal patterns in dolphin density were quantified using a density surface modeling (DSM) approach, accounting for imperfect detection as well as both perception and availability bias. We estimated the abundance of bottlenose dolphins at 3,713 (95% CI = 2,679–5,146; average density of 0.189 ± 0.046 SD individuals per km2) in 2015, 2,638 (95% CI = 1,670–4,168; 0.159 ± 0.135 individuals per km2) in 2016 and 1,635 (95% CI = 1,031–2,593; 0.101 ± 0.103 individuals per km2) in 2017. Too few humpback dolphins were detected in 2015 to model abundance, but their estimated abundance was 1,546 (95% CI = 942–2,537; 0.097 ± 0.03 individuals per km2) and 2,690 (95% CI = 1,792–4,038; 0.169 ± 0.064 individuals per km2) in 2016 and 2017, respectively. Dolphin densities were greatest in nearshore waters, with hotspots in Exmouth Gulf, the Dampier Archipelago, and Great Sandy Islands. Our results provide a benchmark on which future risk assessments can be based to better understand the overlap between pressures and important dolphin habitats in tropical northwestern Australia.

Microplastics (MPs) pose serious threats to various marine organisms, including many threatened apex predators such as cetaceans. However, information on microplastic contamination in cetaceans from Asian waters is limited. Based on the analysis of Fourier transform infrared spectroscopy (FTIR), we reported MPs from finless porpoise intestinal samples and from their habitats along the Fujian coast of the East China Sea. MPs proved to be ubiquitous in both intestinal and habitat water samples. Most intestinal MPs were fibers (86.90%), transparent (51.19%), small sizes (

The oceans contain trillions of plastic particles, mostly microplastics (i.e., particles < 5 mm diameter; 92.4% of plastic particles), which have been detected in organisms at all levels of the marine food web. The ubiquity of marine plastic debris has created a monumental environmental pollution problem with extensive public health consequences, as more than 40% of the world’s population lives near the coast and shares coastal resources. For decades, common bottlenose dolphins (Tursiops truncatus) have been used as sentinels of marine pollution risks for coastal communities that rely on seafood. Recently, prevalent phthalate exposure was documented in bottlenose dolphins residing in Sarasota Bay, FL, at concentrations exceeding those of human reference populations. While the source of their exposure is uncertain, the types of compounds detected suggest a plastic origin. The objective of this study was to screen for plastic ingestion among free-ranging dolphins in Sarasota Bay using gastric samples collected during catch-and-release health assessments. Gastric samples were collected from seven live bottlenose dolphins in 2019, and suspected microplastic particles were detected in all samples. The number of particles per sample ranged from 100, and the most common types were transparent films and white foams. Similar to other marine mammal studies, fibers were also present. Given that dolphins are likely exposed to microplastics via contaminated prey, findings from this and additional studies will help to evaluate the potential of contaminated seafood as an additional source of microplastic exposure for humans, as well as help to inform intervention and risk communication needs regarding seafood safety.

Humans impact natural systems at an unprecedented rate. The North Sea is one of the regions in the world with the highest levels of anthropogenic activity. Here, the harbor porpoise (Phocoena phocoena) is an abundant species and is often regarded as an ecosystem sentinel. A post-mortem surveillance program was established in the Netherlands aimed at increasing knowledge of the effects of human activities on harbor porpoises. In this study, we describe the pathological findings related to anthropogenic and natural causes of death categories in 612 harbor porpoises that stranded between 2008 and 2019, and assess their relations to age, sex, season, and location. The largest anthropogenic category was bycatch (17%), with mainly juveniles affected and peak periods in March and September–October. Other, infrequently diagnosed anthropogenic causes of death were trauma (4%), largely most likely due to ship collisions, and marine debris ingestion and entanglement (0.3%). The risk of dying from anthropogenic causes was highest for juveniles. Lesions compatible with noise-induced hearing loss were investigated in carcasses which were fresh enough to do so (n = 50), with lesions apparent in two porpoises. Non-direct human-induced threats included infectious diseases, which were by far the largest cause of death category (32%), and affected mainly adults. Also, gray seal (Halichoerus grypus) attacks were a frequently assigned cause of death category (24%). There were more acute predation cases in the earlier study years, while porpoises with lesions that suggested escape from gray seal attacks were diagnosed more recently, which could suggest that porpoises adapted to this threat. Our study contributes to understanding porpoise health in response to persisting, new, emerging, and cumulative threats. Building up such knowledge is crucial for conservation management of this protected species.

Prior to 1984, belugas (Delphinapterus leucas) were seen in large numbers during spring and summer in Kotzebue Sound, Alaska, and provided an important subsistence resource to coastal residents. Sightings and harvest declined sharply beginning in 1984: the average annual harvest dropped from 84/yr (1977–1983) to 16/yr (1984–2021). To examine the current seasonal and spatial occurrence of belugas in Kotzebue Sound, passive acoustic moorings were deployed in summer 2013 and year-round in 2014–2016. Three moorings were deployed off Cape Krusenstern, northwestern Kotzebue Sound, to monitor cetaceans traveling nearshore. A mooring was also deployed near Chamisso Island, southeastern Kotzebue Sound. We used automatic detectors to process the recordings for echolocation and tonal signals, and all detections were manually validated. Belugas, harbor porpoises (Phocoena), and transient killer whales (Orcinus orca) were detected in both areas, primarily from June to November. Detections extended into early winter for belugas, and sporadic detections were confirmed for porpoises from January to March. Belugas were detected on a total of 20 days, killer whales on 96 days, and porpoises on 179 days. All beluga detections were echolocation signals; the absence of social signals likely reflects an anti-predator response to transient killer whales and possibly to subsistence hunters. Killer whale detections were composed of echolocation signals, limited to very short click trains, double clicks, and single clicks, a known cryptic acoustic behavior used when targeting prey. Killer whales also emitted high frequency whistles (17–51 kHz) providing the first evidence of these types of signals for transients. Our results suggest transient killer whales in predation mode scouting harbor porpoise and beluga habitat, concurrent with belugas in silent anti-predation mode. This anti-predation acoustic behavior by belugas was also evident when killer whales were not present, conveying a continued perception of predation risk for this habitat. The combined natural and anthropogenic predation pressure in Kotzebue Sound could be playing an important role in the continued low occurrence of belugas.

The Cetacean Migration Corridor is an important marine protected area for cetacean species in the Western Mediterranean, and part of its waters constitute the main fishing grounds for the Valencia region (East Spain) fishing fleet. Here we aim to assess the interactions between all active fisheries operating in the waters of the Valencia region and the cetacean species inhabiting this area. A total of 282 face-to-face interviews (51.37% of the total fleet) to fishers were held on 20 ports at the study area to gather information about cetacean by-catch and all types of interactions between fisheries and cetaceans. The interviewed bottom trawlers (n = 148 boats) reported a monthly by-catch rate (C) of 0.01 dolphins per vessel. Bottom trawling vessels operating at neritic zones only reported by-catch of common bottlenose dolphin (C = 0.009), while those fishing at oceanic zones by-caught striped dolphin (C = 0.006) and common bottlenose dolphin (C = 0.003). The interviewed artisanal fishers (n = 114 boats), the second most important fishery in the study area, only reported one dolphin by-catch event, but 90 of these boats communicated continued negative interactions with the common bottlenose dolphin, causing gear damage and catch take. The interviewed vessels gave an estimation of their annual economic loss produced by this interaction (mean ± SD: 2,998.10 ± 2095.02 € per boat). Other fisheries operating in the Valencia region were purse-seiners (n = 15 boats) and pelagic longlines, a fishery that has almost disappeared in the study area (n = 5 boats). The first one had the highest estimated dolphin by-catch rate (C= 0.04) and mainly interacted with common bottlenose dolphin, but also with striped dolphin. The information gathered from interviews was complimented with long-term stranding data (1990–2020). Despite the fact that only 7.80% of all recorded stranded cetaceans showed fisheries interaction signs, 26.72% of the common bottlenose dolphins recorded showed evidence of this interaction, thus confirming that it is the cetacean species most affected by fisheries in the area. Records of stranded striped dolphin (6.45%) also showed evidence of fisheries interaction. Based on both dolphin by-catch and gear damage, management plans are needed in the area to ensure cetacean conservation and also fisheries sustainability in waters inside and around marine protected areas at the Spain’s Mediterranean.

Marine traffic has been identified as a serious threat to Mediterranean cetaceans with few mitigation strategies in place. With only limited research effort within the Eastern Basin, neither baseline species knowledge nor the magnitude of threats have been comprehensively assessed. Delineating the extent of overlap between marine traffic and cetaceans provides decision makers with important information to facilitate management. The current study employed the first seasonal boat surveys within the Eastern Mediterranean Sea of Turkey, incorporating visual and acoustic survey techniques between 2018 and 2020 to understand the spatial distribution of cetacean species. Additionally, marine traffic density data were retrieved to assess the overlap with marine traffic. Encounter rates of cetaceans and marine traffic density were recorded for each 100 km2 cell within a grid. Subsequently, encounter and marine traffic density data were used to create a potential risk index to establish where the potential for marine traffic and cetacean overlap was high. Overall, eight surveys were undertaken with a survey coverage of 21,899 km2 between the Rhodes and Antalya Basins. Deep diving cetaceans (sperm and beaked whales) were detected on 28 occasions, with 166 encounters of delphinids of which bottlenose, striped and common dolphins were visually confirmed. Spatially, delphinids were distributed throughout the survey area but encounter rates for both deep diving cetaceans and delphinids were highest between the Rhodes and Finike Basins. While sperm whales were generally detected around the 1000m contour, delphinids were encountered at varying depths. Overall, two years of monthly marine traffic density were retrieved with an average density of 0.37 hours of monthly vessel activity per square kilometer during the study period. The mean density of vessels was 0.32 and 1.03 hours of monthly vessel activity per square kilometer in non-coastal and coastal waters respectively. The Eastern Mediterranean Sea has several important shipping lanes within the study area. Two priority areas for deep diving cetacean and a large priority area for cetaceans were identified in the waters between Marmaris and Finike where high cetacean encounters and dense marine traffic overlapped. The current study revealed important habitats for cetaceans within the data deficient Eastern Mediterranean Sea and delineated potential risk area where marine traffic should be limited.

Each individual cetacean is an ecosystem itself, potentially harboring a great variety of animals that travel with it. Despite being often despised or overlooked, many of these epizoites have been proven to be suitable bio-indicators of their cetacean hosts, informing on health status, social interactions, migration patterns, population structure or phylogeography. Moreover, epizoites are advantageous over internal parasites in that many of them can be detected by direct observation (e.g., boat surveys), thus no capture or dissection of cetaceans are necessary. Previous reviews of epizoites of cetaceans have focused on specific geographical areas, cetacean species or epibiotic taxa, but fall short to include the increasing number of records and scientific findings about these animals. Here we present an updated review of all records of associations between cetaceans and their epibiotic fauna (i.e., commensals, ecto- or mesoparasites, and mutualists). We gathered nearly 500 publications and found a total of 58 facultative or obligate epibiotic taxa from 11 orders of arthropods, vertebrates, cnidarians, and a nematode that are associated to the external surface of 66 cetacean species around the globe. We also provide information on the use as an indicator species in the literature, if any, and about other relevant traits, such as geographic range, host specificity, genetic data, and life-cycle. We encourage researchers, not only to provide quantitative data (i.e., prevalence, abundance) on the epizoites they find on cetaceans, but also to inform on their absence. The inferences drawn from epizoites can greatly benefit conservation plans of both cetaceans and their epizoites.

Free-ranging cetaceans are considered sentinels for the marine ecosystem's health. New and non-invasive methods have been set up for the collection of fecal samples from free-ranging big whales at sea, permitting to gain an excellent epidemiological picture of parasitic infections in wild populations. To select the best protocol to be used for copromicroscopic examination in cetaceans stool samples, we evaluated the sensitivity of two commonly used techniques, i.e., a sedimentation-floatation method and the Mini-FLOTAC through validation by helminth isolation from the digestive tract. For this aim, gastrointestinal content and fecal samples were collected during necropsy from 44 cetaceans, including bottlenose dolphins (Tursiops truncatus), striped dolphins (Stenella coeruleoalba), sperm whales (Physeter macrocephalus), Risso's dolphins (Grampus griseus), Cuvier's beaked whales (Ziphius cavirostris), pilot whale (Globicephala melas), and fin whales (Balaenoptera physalus). Helminths were recovered through washing and filtering of the gastrointestinal contents and morphologically identified. Copromicroscopic examinations were performed on formalin-preserved fecal samples, using a sodium nitrate, sodium thiosulphate, and sucrose solution (s.g. = 1.450) for both methods. Helminths belonging to 9 taxa (i.e., the trematodes Synthesium tursionis, Synthesium delamurei, Campula palliata, Braunina cordiformis, Pholeter gastrophilus, the nematode Anisakis sp., cestodes of the family Tetrabothriidae and the acanthocephalan Bolbosoma sp.) were isolated. Eggs referable to the same taxa, with the exception of cestodes, were found in copromicroscopic analyses. Sensitivity of the Mini-FLOTAC method appeared higher or equal for all taxa, proving superior to the sedimentation-flotation method for the detection of all except Anisakis sp. The concordance of the two tests indeed revealed a moderate to perfect agreement (kappa values 0.42–1). Not excluding the limitations inherent to the techniques themselves, explanations for false-negative results at copromicroscopy could be linked to parasite-related factors, including prepatent infections, low parasitic burdens, or intermittent egg shedding. Notwithstanding these limitations, this study evidenced that the Mini-FLOTAC protocol approximates more accurately the composition of the gastrointestinal helminthic community of cetaceans from copromicroscopic examination, providing at the same time a quantitative estimation.

Cetaceans provide a range of ecosystem services of value to anthropogenic interests. Following the Common International Classification of Ecosystem Services (CICES) these are categorised as regulation and maintenance, provisioning, and cultural values. This study focuses on those of importance to climate change mitigation through regulation and maintenance. Under regulation and maintenance, cetaceans can store, transport, and influence stocks of carbon through: climate regulation through carbon sequestration, enhanced biodiversity and ecosystem potential, and enhanced primary productivity. ‘Climate regulation through carbon sequestration’ can be quantified as carbon fixation through living biomass and ‘whale-falls’. Cetacean populations store significant stocks of carbon in living biomass. After death, sinking whale carcasses, ‘whale-falls’, provide a significant transfer of biomass and nutrients to benthic sediments and support deep sea ecosystems. During their lifespan, cetaceans also disperse nutrients through feeding and excretion both horizontally through the ‘whale-conveyor’ and vertically through the ‘whale pump’. As nutrient limitations hinder phytoplankton growth, these processes can be quantified as the increased potential of phytoplankton carbon fixation from cetacean driven nutrient cycling. Enhanced biodiversity, ecosystem potential, and primary productivity can be quantified as carbon fixation through nutrient cycling. This study reviews the evaluative and valuative techniques used in cetacean ecosystem service research and adapts and applies them to the Joint Cetacean Protocol (JCP) data which details cetacean abundance and distribution in Europe. They are then reviewed with regards to their robustness, application in markets, and in decision making processes. Cetacean populations are estimated to contain 2 Mt C, cycle 60,000 t N yr-1, and impact carbon fluxes by as much as 22 Mt C yr-1 in the survey area. The values highlight key areas for cetacean conservation: the Outer Hebrides, west of south Wales, around the Isle of Man, to the east of England, and to the north-east of the Shetland Islands. There is, however, large uncertainty in the evaluative processes used; nutrient cycling models presented in this study don’t capture removal of excess nutrients, or the values of enhanced biodiversity and ecosystem potential. As such, they are not sufficiently robust to quantify market values but highlight key areas for future research on climate change mitigation through conservation. Key areas of future research include phytoplankton uptake rates of nitrogen and phosphorus in nutrient limited waters, quantification of ‘enhanced biodiversity and ecosystem potential’, and nutrient removal from coastal waters.

The mammalian brain is characterized by high energy expenditure and small energy reserves, making it dependent on continuous vascular oxygen and nutritional supply. The brain is therefore extremely vulnerable to hypoxia. While neurons of most terrestrial mammals suffer from irreversible damage after only short periods of hypoxia, neurons of the deep-diving hooded seal (Cystophora cristata) show a remarkable hypoxia-tolerance. To identify the molecular mechanisms underlying the intrinsic hypoxia-tolerance, we excised neurons from the visual cortices of hooded seals and mice (Mus musculus) by laser capture microdissection. A comparison of the neuronal transcriptomes suggests that, compared to mice, hooded seal neurons are endowed with an enhanced aerobic metabolic capacity, a reduced synaptic transmission and an elevated antioxidant defense. Publicly available whole-tissue brain transcriptomes of the bowhead whale (Balaena mysticetus), long-finned pilot whale (Globicephala melas), minke whale (Balaenoptera acutorostrata) and killer whale (Orcinus orca), supplemented with 2 newly sequenced long-finned pilot whales, suggest that, compared to cattle (Bos taurus), the cetacean brain also displays elevated aerobic capacity and reduced synaptic transmission. We conclude that the brain energy balance of diving mammals is preserved during diving, due to reduced synaptic transmission that limits energy expenditure, while the elevated aerobic capacity allows efficient use of oxygen to restore energy balance during surfacing between dives. [ABSTRACT FROM AUTHOR]

The distribution of wide-ranging cetacean species often cross national or jurisdictional boundaries, which creates challenges for monitoring populations and managing anthropogenic impacts, especially if data are only available for a portion of the species’ range. Many species found off the U.S. West Coast are known to have continuous distributions into Mexican waters, with highly variable abundance within the U.S. portion of their range. This has contributed to annual variability in design-based abundance estimates from systematic shipboard surveys off the U.S. West Coast, particularly for the abundance of warm temperate species such as striped dolphin, Stenella coeruleoalba, which increases off California during warm-water conditions and decreases during cool-water conditions. Species distribution models (SDMs) can accurately describe shifts in cetacean distribution caused by changing environmental conditions, and are increasingly used for marine species management. However, until recently, data from waters off the Baja California peninsula, México, have not been available for modeling species ranges that span from Baja California to the U.S. West Coast. In this study, we combined data from 1992–2018 shipboard surveys to develop SDMs off the Pacific Coast of Baja California for ten taxonomically diverse cetaceans. We used a Generalized Additive Modeling framework to develop SDMs based on line-transect surveys and dynamic habitat variables from the Hybrid Coordinate Ocean Model (HYCOM). Models were developed for ten species: long- and short-beaked common dolphins (Delphinus delphis delphis and D. d. bairdii), Risso’s dolphin (Grampus griseus), Pacific white-sided dolphin (Lagenorhynchus obliquidens), striped dolphin, common bottlenose dolphin (Tursiops truncatus), sperm whale (Physeter macrocephalus), blue whale (Balaenoptera musculus), fin whale (B. physalus), and humpback whale (Megaptera novaeangliae). The SDMs provide the first fine-scale (approximately 9 x 9 km grid) estimates of average species density and abundance, including spatially-explicit measures of uncertainty, for waters off the Baja California peninsula. Results provide novel insights into cetacean ecology in this region as well as quantitative spatial data for the assessment and mitigation of anthropogenic impacts.

Studying patterns in marine mammal stranding cases can provide insight into changes in population health, abundance, and distribution. Cetaceans along the United States West coast strand for a wide variety of reasons, including disease, injury, and poor nutritional status, all of which may be caused by both natural and anthropogenic factors. Examining the potential drivers of these stranding cases can reveal how populations respond to changes in their habitat, notably oceanographic variability and anthropogenic activities. In this study, we aim to synthesize recent patterns in 1,819 cetacean strandings across 26 species in the Pacific Northwest from 2000 to 2019 to compare with previous findings. Additionally, we aim to quantify the effects of localized and basin-scale oceanographic conditions on monthly stranding cases for five focal species using generalized additive models in order to explore potential relationships between strandings and changes in biophysical features that could affect foraging conditions or other important physiological cues. Our results suggest that strandings of harbor porpoises, gray whales, humpback whales, Dall’s porpoises, and striped dolphins are correlated with certain environmental variables, including sea surface temperature, chlorophyll concentration, and the Pacific Decadal Oscillation depending on the species. While it remains challenging to identify the causal mechanisms that underlie these relationships for a given species or population based on its utilization of such a complex ecosystem, improving our understanding of periods of increased strandings can enhance our knowledge of how these species interact with their environment and assist conservation and management efforts. This study enhances the utility of stranding records over time beyond simply reporting trends and has broader applicability to other geographic regions amid global climate change.

The eye of the largest adult mammal in the world, the whale, offers a unique opportunity to study the evolution of the visual system and its adaptation to aquatic environments. However, the difficulties in obtaining cetacean samples mean these animals have been poorly studied. Thus, the aim of this study was to characterise the different neurons and glial cells in the whale retina by immunohistochemistry using a range of molecular markers. The whale retinal neurons were analysed using different antibodies, labelling retinal ganglion cells (RGCs), photoreceptors, bipolar and amacrine cells. Finally, glial cells were also labelled, including astrocytes, Müller cells and microglia. Thioflavin S was also used to label oligomers and plaques of misfolded proteins. Molecular markers were used to label the specific structures in the whale retinas, as in terrestrial mammalian retinas. However, unlike the retina of most land mammals, whale cones do not express the cone markers used. It is important to highlight the large size of whale RGCs. All the neurofilament (NF) antibodies used labelled whale RGCs, but not all RGCs were labelled by all the NF antibodies used, as it occurs in the porcine and human retina. It is also noteworthy that intrinsically photosensitive RGCs, labelled with melanopsin, form an extraordinary network in the whale retina. The M1, M2, and M3 subtypes of melanopsin positive-cells were detected. Degenerative neurite beading was observed on RGC axons and dendrites when the retina was analysed 48 h post-mortem. In addition, there was a weak Thioflavin S labelling at the edges of some RGCs in a punctuate pattern that possibly reflects an early sign of neurodegeneration. In conclusion, the whale retina differs from that of terrestrial mammals. Their monochromatic rod vision due to the evolutionary loss of cone photoreceptors and the well-developed melanopsin-positive RGC network could, in part, explain the visual perception of these mammals in the deep sea. [ABSTRACT FROM AUTHOR]

The eye of the largest adult mammal in the world, the whale, offers a unique opportunity to study the evolution of the visual system and its adaptation to aquatic environments. However, the difficulties in obtaining cetacean samples mean these animals have been poorly studied. Thus, the aim of this study was to characterise the different neurons and glial cells in the whale retina by immunohistochemistry using a range of molecular markers. The whale retinal neurons were analysed using different antibodies, labelling retinal ganglion cells (RGCs), photoreceptors, bipolar and amacrine cells. Finally, glial cells were also labelled, including astrocytes, Müller cells and microglia. Thioflavin S was also used to label oligomers and plaques of misfolded proteins. Molecular markers were used to label the specific structures in the whale retinas, as in terrestrial mammalian retinas. However, unlike the retina of most land mammals, whale cones do not express the cone markers used. It is important to highlight the large size of whale RGCs. All the neurofilament (NF) antibodies used labelled whale RGCs, but not all RGCs were labelled by all the NF antibodies used, as it occurs in the porcine and human retina. It is also noteworthy that intrinsically photosensitive RGCs, labelled with melanopsin, form an extraordinary network in the whale retina. The M1, M2, and M3 subtypes of melanopsin positive-cells were detected. Degenerative neurite beading was observed on RGC axons and dendrites when the retina was analysed 48 h post-mortem. In addition, there was a weak Thioflavin S labelling at the edges of some RGCs in a punctuate pattern that possibly reflects an early sign of neurodegeneration. In conclusion, the whale retina differs from that of terrestrial mammals. Their monochromatic rod vision due to the evolutionary loss of cone photoreceptors and the well-developed melanopsin-positive RGC network could, in part, explain the visual perception of these mammals in the deep sea.

Determining how cetaceans and other threatened marine animals use coastal habitats is critical to the effective conservation of these species. Environmental DNA (eDNA) is an emerging tool that can potentially be used to detect cetaceans over broad spatial and temporal scales. In particular, eDNA may present a useful complementary method for monitoring their presence during visual surveys in nearshore areas, and for co-detecting prey. In conjunction with ongoing visual surveys, we tested the ability of eDNA metabarcoding to detect the presence and identity of cetaceans in the New York Bight (NYB), and to identify fish species (potential prey) present in the area. In almost all cases in which humpback whales and dolphins were visually observed, DNA from these species was also detected in water samples. To assess eDNA degradation over time, we took samples in the same location 15 and 30 min after a sighting in seven instances, and found that eDNA often, but not always, dropped to low levels after 30 min. Atlantic menhaden were detected in all samples and comprised the majority of fish sequences in most samples, in agreement with observations of large aggregations of this important prey species in the NYB. While additional data are needed to better understand how factors such as behavior and oceanographic conditions contribute to the longevity of eDNA signals, these results add to a growing body of work indicating that eDNA is a promising tool to complement visual and acoustic surveys of marine megafauna.

Conservation management requires evidence, but robust data on key parameters such as threats are often unavailable. Conservation-relevant insights might be available within datasets collected for other reasons, making it important to determine the information content of available data for threatened species and identify remaining data-gaps before investing time and resources in novel data collection. The Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis) has declined severely across the middle-lower Yangtze, but multiple threats exist in this system and the relative impact of different anthropogenic activities is unclear, preventing identification of appropriate mitigation strategies. Several datasets containing information on porpoises or potential threats are available from past boat-based and fishing community surveys, which might provide novel insights into causes of porpoise mortality and decline. We employed multiple analytical approaches to investigate spatial relationships between live and dead porpoises and different threats, reproductive trends over time, and sustainable offtake levels, to assess whether evidence-based conservation is feasible under current data availability. Our combined analyses provide new evidence that mortality is spatially associated with increased cargo traffic; observed mortality levels (probably a substantial underestimate of true levels) are unsustainable; and population recruitment is decreasing, although multiple factors could be responsible (pollutants, declining fish stocks, anthropogenic noise, reduced genetic diversity). Available data show little correlation between patterns of mortality and fishing activity even when analyzed across multiple spatial scales; however, interview data can be affected by multiple biases that potentially complicate attempts to reconstruct levels of bycatch, and new data are required to understand dynamics and sustainability of porpoise-fisheries interactions. This critical assessment of existing data thus suggests that in situ porpoise conservation management must target multiple co-occurring threats. Even limited available datasets can provide new insights for understanding declines, and we demonstrate the importance of an integrative approach for investigating complex conservation problems and maximizing evidence in conservation planning for poorly known taxa.

Micro- and macro-plastics pollution is a growing threat for marine biodiversity, ecosystem functioning, and consequently human wellbeing. Numerical models that consider main sources of plastics and simulate their dispersal characteristics are unique tools for exploring plastic pollution in marine protected areas (MPAs). Here, we used a Lagrangian plastic drift model, taking into account various sizes/types of plastic litter, originating from major land-based sources (coastal cities and rivers), to predict plastic accumulation zones in protected areas of the Mediterranean Sea (i.e., nationally designated MPAs, Natura 2000 sites, and Cetacean Critical Habitats). The model predicted that the size of plastic litters plays a key role in their dispersion and ultimate destination (i.e., larger litter travel longer distances). Most of the studied Mediterranean countries (13 out of 15) had at least one national MPA with over 55% of macroplastics originating from sources beyond their borders. Consequently, in many cases, local efforts to reduce plastic pollution in protected areas would be insufficient, especially for macroplastics management. Transboundary collaboration among Mediterranean countries is critical for implementing successful management plans against plastic pollution in their territorial waters and specifically in MPAs.

Humpback whales, Megaptera novaeangliae, are a highly migratory species exposed to a wide range of environmental factors during their lifetime. The spatial and temporal characteristics of such factors play a significant role in determining suitable habitats for breeding, feeding and resting. The existing studies of the relationship between oceanic conditions and humpback whale ecology provide the basis for understanding impacts on this species. Here we have determined the most relevant environmental drivers identified in peer-reviewed literature published over the last four decades, and assessed the methods used to identify relationships. A total of 148 studies were extracted through an online literature search. These studies used a combined estimated 105,000 humpback whale observations over 1,216 accumulated study years investigating the relationship between humpback whales and environmental drivers in both Northern and Southern Hemispheres. Studies focusing on humpback whales in feeding areas found preferences for areas of upwelling, high chlorophyll-a concentration and frontal areas with changes in temperature, depth and currents, where prey can be found in high concentration. Preferred calving grounds were identified as shallow, warm and with slow water movement to aid the survival of calves. The few studies of migration routes have found preferences for shallow waters close to shorelines with moderate temperature and chlorophyll-a concentration. Extracting information and understanding the influence of key drivers of humpback whale behavioral modes are important for conservation, particularly in regard to expected changes of environmental conditions under climate change.

The study of cetacean strandings was globally recognised as a priority topic at the 2019 World Marine Mammal Conference, in recognition of its importance for understanding the threats to cetacean communities and, more broadly, the threats to ecosystem and human health. Rising multifaceted anthropogenic and environmental threats across the globe, as well as whale population recovery from exploitation in some areas, are likely to coincide with an increase in reported strandings. However, the current methods to monitor strandings are inherently biased towards populated coastlines, highlighting the need for additional surveying tools in remote regions. Very High Resolution (VHR) satellite imagery offers the prospect of upscaling monitoring of mass strandings in minimally populated/unpopulated and inaccessible areas, over broad spatial and temporal scales, supporting and informing intervention on the ground, and can be used to retrospectively analyse historical stranding events. Here we (1) compile global strandings information to identify the current data gaps; (2) discuss the opportunities and challenges of using VHR satellite imagery to monitor strandings using the case study of the largest known baleen whale mass stranding event (3) consider where satellites hold the greatest potential for monitoring strandings remotely and; (4) outline a roadmap for satellite monitoring. To utilise this platform to monitor mass strandings over global scales, considerable technical, practical and environmental challenges need to be addressed and there needs to be inclusivity in opportunity from the onset, through knowledge sharing and equality of access to imagery.

Multi-species feeding associations (MSFAs) are temporary communities of animals exploiting the same or co-occurrent resources. Their dynamics are species dependent, often creating competitive interactions, but they can also increase foraging efficiency and ultimately individual fitness. The foraging behaviors of some species can enhance prey capture by others, with different roles depending on the species present. Here, we use the Hauraki Gulf, New Zealand, as a model system to quantitatively characterize the principal types of MSFAs between 2011 and 2020. We determine the foraging associations of a large generalist predator, the Bryde’s whale, and how shifts in its prey preference change the dynamics between seabird competitors. Hierarchical clustering from influential predator groups identified three types of MSFAs. Two of mainly fish-feeding predators, one including and one lacking Bryde’s whales, and one involving (although not limited to) plankton-feeders associated with Bryde’s whales. Cluster frequencies featured significant temporal trends, whereas MSFA diversity and whale association rate showed no significant changes. Bryde’s whales’ increasing reliance on zooplankton highlights their foraging plasticity, with changes in cluster frequencies and resource competition related to this shift from fish to zooplankton. The role of Bryde’s whales varies from joiners and terminators in fish-feeding aggregations to initiators with plankton-feeding seabird associations, thereby changing the MSFA dynamics. MSFAs tend toward a diversity equilibrium, i.e., a maximum number of species involved before competitive effects exceed the benefits of interaction. Functional MSFAs where heterospecific interactions are important to foraging success can be affected by changing composition. Future work should focus on the behavioral interactions between key predators, prey availability and their effect on MSFAs.

Physio-logging has the potential to explore the processes that underlie the dive behavior and ecology of marine mammals and seabirds, as well as evaluate their adaptability to environmental change and other stressors. Regulation of heart rate lies at the core of the physiological processes that determine dive capacity and performance. The bio-logging of heart rate in unrestrained animals diving at sea was infeasible, even unimaginable in the mid-1970s. To provide a historical perspective, I review my 40-year experience in the development of heart rate physio-loggers and the evolution of a digital electrocardiogram (ECG) recorder that is still in use today. I highlight documentation of the ECG and the interpretation of heart rate profiles in the largest of avian and mammalian divers, the emperor penguin and blue whale.

Identifying mortality sources and mitigation solutions is crucial in species management and conservation. In killer whales (Orcinus orca), mortality events may pose a serious concern for the conservation of small discrete populations, especially if they involve entire groups. This study investigated 19 incidents involving 116 killer whales from a minimum of five populations becoming naturally entrapped in inshore areas of the North Pacific (n = 12) and North Atlantic (n = 7) oceans between 1949 and 2019. Here, we aim to provide an assessment of possible causal factors, lethality and human responses to these events. Site characteristics and group size identified three categories of entrapments. In Category 1, nine cases involved small groups of killer whales (median = 5, range: 1–9) at sites characterized by severe geographic and food constraints. Four cases in Category 2 included larger groups (median= 14, range: 6–19) and entrapment sites with no obvious geographic constraints but at which man-made structures could have acted as deterrents. Five cases assigned to Category 3 involved lone, often young individuals settling in a restricted home range and engaging in interactions with people and boats. Overall, all or some of the killer whales swam out on their own after a mean of 36 d of entrapment (range: 1–172, SD = 51, n = 9 cases), died of nutritional/physiological stress after 58 d (range: 42–90, SD = 21, n = 3 cases) or of injury after ~5 years of daily interactions with boat traffic (n = 1 case). Indication of the killer whales' declining condition or being at risk of injury, and of poor habitat quality, led to the decision to intervene in seven cases where a variety of methods were used to guide or relocate remaining individuals back to open waters after 39 d (SD = 51, range = 8–150). Monitoring protocols, which aided in identifying entrapment situations, and intervention methods which enhanced the health and survival of entrapped killer whales, are discussed.

Although Bryde’s whale (Balaenoptera edeni) has worldwide distribution, it is considered one of the most difficult species of baleen whales to study. Two populations existing in the Gulf of California have been proposed, but difficulties in obtaining biopsies have complicated testing the hypothesis of discrete stock difference between north and south of the Gulf. On the other hand, bioacoustics analyses have been used to differentiate populations from other whale species. Therefore, to provide information for the previously proposed hypothesis, the most common Bryde’s call (Be4) in the region was analyzed. Acoustic data was collected using a High-frequency Acoustic Recording Package (HARP) system placed at two locations in the Gulf of California: one in the north from November 2006 to June 2007 and other one in the south from August to December 2008. Duration and frequency range were measured for calls with a signal-to-noise ratio (SNR) greater than 27 dB. The Mann–Whitney-U test was performed to compare distributions in both geographic areas, and the results were compared with a photo-identification analysis. Of the 903 Be4 calls detected, 103 (north) and 92 (south) met the SNR requirement. Duration showed a significant difference (Mann–Whitney test, U = 11238, z-statistics = 2.91, p = 0.003) with southern calls being longer than the northern ones. The results suggest that the northern population remains resident in the north with some movement toward the south, also verified by photo-identification. A detailed inspection showed a double distribution in the south (Mann–Whitney test, U = 2211, z-statistics = −8.39, p = 4.4776e-17), suggesting the presence at the same time of resident and transient populations. The latter has been suggested to belong to the Eastern Tropical Pacific. The results suggest a geographic variation in B. edeni Be4 call type and support the existence of two populations within the Gulf of California.

Proteins play an important role in many reproductive functions such as sperm maturation, sperm transit in the female genital tract or sperm-oocyte interaction. However, in general, little information concerning reproductive features is available in the case of aquatic animals. The present study aims to characterize the proteome of both spermatozoa and seminal plasma of bottlenose dolphins (Tursiops truncatus) as a model organism for cetaceans. Ejaculate samples were obtained from two trained dolphins housed in an aquarium. Spermatozoa and seminal plasma were analyzed by means of proteomic analyses using an LC-MS/MS, and a list with the gene symbols corresponding to each protein was submitted to the DAVID database. Of the 419 proteins identified in spermatozoa and 303 in seminal plasma, 111 proteins were shared by both. Furthermore, 70 proteins were identified as involved in reproductive processes, 39 in spermatozoa, and 31 in seminal plasma. The five most abundant proteins were also identified in these samples: AKAP3, ODF2, TUBB, GSTM3, ROPN1 for spermatozoa and CST11, LTF, ALB, HSP90B1, PIGR for seminal plasma. In conclusion, this study provides the first characterization of the proteome in cetacean sperm and seminal plasma, opening the way to future research into new biomarkers, the analysis of conservation capacity or possible additional applications in the field of assisted reproductive technologies.

The growing concerns about the negative effects caused by whale watching on wild cetacean populations are evincing the need to measure whale watching effort more precisely. The current alternatives do not provide sufficient information or imply time-consuming and staff-intensive tasks that limit their effectiveness to establish the maximum carrying capacity for this tourist activity. A methodology based on big data analysis, using Automatic Identification System (AIS) messages can provide valuable vessel activity information, which is necessary to estimate whale watching effort in areas with cetacean populations. We used AIS data to automatically detect whale watching operations and quantify whale watching effort with high spatial and temporal resolution in the Canary Islands off the west African coast. The results obtained in this study are very encouraging, proving that the methodology can estimate seasonal and annual trends in the whale watching effort. The methodology has also proved to be effective in providing detailed spatial information about the whale watching effort, which makes an interesting tool to manage spatial regulations and enforce exclusion zones. The widespread use of AIS devices in maritime navigation provides an enormous potential to easily extend this methodology to other regions worldwide. Any public strategy aimed at the sustainable use of marine resources should enhance the use of this kind of information technologies, collecting and archiving detailed information on the activity of all the vessels, especially in marine protected areas.

The Indian Ocean humpback dolphin (Sousa plumbea) is “endangered” with likely less than 500 animals remaining in South African waters. Established in 2016, the SouSA Consortium is a formalised network of scientists and conservationists to combine knowledge and research efforts, and make coordinated decisions with the aim of conserving the species. The first collaborative project collated available photo-identification data in an attempt to refine a national population estimate and investigate movements between research sites. This work was able to identify 250 uniquely marked individuals, with the population divided into the south-coast (Agulhas bioregion) and east-coast (Natal bioregion) populations. Environmental factors almost certainly play a role in the declining numbers of the species in South African waters. However, individual threats and solutions are challenging to identify as the South African marine environment is undergoing significant natural and anthropogenic changes with major shifts in the distribution and numbers of some prey, competitor and predator species. Therefore, we believe that a continued investigation of potential contributing factors and their interaction will take too long, inevitably resulting in another case of documenting extinction. With this in mind, we present the results of a SWOT (Strengths, Weaknesses, Opportunities, and Threats) analysis in an effort to help us identify the next steps to take toward the conservation of humpback dolphins in South African waters. We unanimously conclude that no single cause for the rapid decline of humpback dolphins in South African waters can be identified, and that the cumulative effects of multiple stressors, which are difficult to pinpoint and mitigate, are impacting population numbers. While highlighting the need for continued research, we suggest a shift toward more action-focused conservation efforts, the first concrete steps being the development of a Conservation Management Plan with input from other stakeholders.

Marine mammal body composition has been an important tool that is used as a proxy for the health and condition of individuals within a population. Common bottlenose dolphin (Tursiops truncatus) body composition is influenced by variations in blubber thickness resulting from changes in temperature, prey availability, health, and life-history traits. We examined how environmental, ontogenetic, and reproductive variables influenced the body composition of common bottlenose dolphins in Sarasota Bay using data collected from a long-term monitoring project by the Sarasota Dolphin Research Program (SDRP). We found that both sea surface temperature (SST) and catch per unit effort (CPUE), used as a proxy for prey availability, influenced body composition. There was a high degree of seasonality in body composition, with higher values occurring in winter when SST and CPUE were both low. Ontogeny also greatly influenced body composition, as younger dolphins typically had thicker blubber than mature individuals. Interestingly, young females allocated more energy to allometric growth than deposition of blubber for body composition when compared to young males. However, as females matured and their growth slowed, they invested more in body composition. We found no significant difference in body composition of females of varying reproductive states, providing further evidence of their status as true income breeders. Our work highlights that changes in body composition result from fluctuations in environmental variables and that energy allocation to body composition changes with ontogeny.