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Antarctic specimens collected during various research expeditions are preserved in natural history collections around the world potentially offering a cornucopia of morphological and molecular data. Historical samples of marine species are, however, often preserved in formaldehyde which may render them useless for genetic analysis. We sampled stomachs and hindguts from 225 Trematomus specimens from the Natural History Museum London. These samples were initially collected between 20 and 100 years ago and fixed in either formaldehyde or ethanol. A 313 bp fragment of the cytochrome c oxidase subunit I (COI) was amplified and sequenced for prey item identification in the stomach and a 450 bp region of the 16S rRNA gene to investigate microbiome composition in the gut system. Both data sets were characterized by large dropout rates during extensive quality controls. Eventually, no unambiguous results regarding stomach content (COI) were retained, possibly due to degraded DNA, inefficient primers and contamination. In contrast, reliable microbiome composition data (16S rRNA) was obtained from 26 samples. These data showed a correlation in change of microbiome composition with fish size as well as year of the catch, indicating a microbiome shift throughout ontogeny and between samples from different decades. A comparison with contemporary samples indicated that the intestinal microbiome of Trematomus may have drastically changed within the last century. Further extensive studies are needed to confirm these patterns with higher sample numbers. Molecular analyses of museum stored fish can provide novel micro evolutionary insights that may benefit current efforts to prioritize conservation units in the Southern Ocean.

Small mesopelagic fish are ubiquitous in the ocean, representing an important trophic link between zooplankton and tertiary consumers such as larger fish, marine mammals and birds. Lanternfishes (Myctophidae) are common worldwide as well as in the Southern Ocean. However, only 17 of the approximately 250 myctophid species occur exclusively in sub-Antarctic or Antarctic waters. It is unclear whether they colonized these latitudes once and diversified from there, or whether multiple colonization events took place in which multiple ancestral phenotypes entered the Southern Ocean at various times. Phylogeographic patterns have been investigated for individual myctophid species, but so far no study has compared species across the Southern Ocean. Here, we present a dataset with previously unpublished cytochrome c oxidase I (COI; n = 299) and rhodopsin (rh1; n = 87) gene sequences from specimens collected at various locations in the Southern Ocean. Our data extend the DNA barcode library of Antarctic mesopelagic fish substantially. Combined morphological and molecular taxonomy lead to confident species level identification in 271 out of 299 cases, providing a robust reference dataset for specimen identification, independently of incomplete morphological characters. This is highly topical in light of prospective ecological metabarcoding studies. Unambiguous sequences were subsequently combined with publicly available sequences of the global DNA barcode library yielding a dataset of over 1,000 individuals for phylogenetic and phylogeographic inference. Maximum likelihood trees were compared with results of recent studies and with the geographical origin of the samples. As expected for these markers, deep phylogenetic relationships remain partially unclear. However, COI offers unmatched sample and taxon coverage and our results at the subfamily to genus level concur to a large extent with other studies. Southern Ocean myctophids are from at least three distant subfamilies suggesting that colonization has occurred repeatedly. Overall, spatial divergence of myctophids is rare, potentially due to their enormous abundance and the homogenizing force of ocean currents. However, we highlight potential (pseudo-)cryptic or unrecognized species in Gymnoscopelus bolini, Lampanyctus achirus, and the non-myctophid genus Bathylagus.

Because of its position between Central Europe and the Iberian Peninsula, French territory is an obligatory expansion route for their respective continental faunas, freshwater ones included. The twin Rhine-Rhone river drainage basins make an obvious link between both Central and Northern Europe and the South-Western Europe. But how fish might have dispersed along the series of rivers of the Western side of France (Seine, Loire, Charente, Garonne and Adour) is less evident, as the ice ages have had a large impact on the pre-existing faunas, before human intervention blurred phylogeographic patterns, either indirectly with trans-watershed canals, or directly with purposeful translocations. What might have survived during the last glacial times is a key question in terms of management and conservation of the local fish biodiversity. Unfortunately, this diversity had been neglected or underappreciated in France until modern phylogeographic and population genetic research provided new and enlightening insights into interspecific and intraspecific variation. Thus, after one century of scientific starvation, French territory recently "gained" a series of novel species in various genera, such as Gobio, Cottus, Squalius, Leuciscus, Phoxinus, and Esox, waiting for more on going "acquisitions" in a near future. These novelties trace a quite different biogeographic landscape of what was formerly supposed to be uniform. Each major river basin retains traces of a more or less recent evolutionary history to put back into the succession of hydrographic and climatic events since the first major invasion, the entrance of cyprinids in Europe during the Oligocene era initiated by the coalescence of what was formerly only an archipelago. The timing of dispersion and on-site speciation will be discussed from the examples provided by the presently investigated genera according to evidence or hypotheses on river connections, sea-level fluctuations and climatic events.