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13 results on '"Xiaoyong Chen"'

1. Additional file 2 of Warburg effect-promoted exosomal circ_0072083 releasing up-regulates NANGO expression through multiple pathways and enhances temozolomide resistance in glioma

Author

Chenyu Ding, Xuehan Yi, Xiangrong Chen, Zanyi Wu, Honghai You, Xiaoyong Chen, Gaoqi Zhang, Sun, Yong, Xingyao Bu, Xiyue Wu, Zhangya Lin, Jianjun Gu, Yuanxiang Lin, and Dezhi Kang

Abstract

Additional file 2: Table S2. The oligo sequences for transfection in this study.

Published
2021
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3. Additional file 4: Figure S8â S14. of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Author

Junxing Yang, Xiaoli Chen, Bai, Jie, Dongming Fang, Qiu, Ying, Wansheng Jiang, Yuan, Hui, Bian, Chao, Lu, Jiang, Shiyang He, Xiaofu Pan, Yaolei Zhang, Xiaoai Wang, Xinxin You, Yongsi Wang, Sun, Ying, Danqing Mao, Liu, Yong, Guangyi Fan, Zhang, He, Xiaoyong Chen, Xinhui Zhang, Lanping Zheng, Jintu Wang, Cheng, Le, Jieming Chen, Zhiqiang Ruan, Li, Jia, Yu, Hui, Peng, Chao, Xingyu Ma, Junmin Xu, He, You, Zhengfeng Xu, Pao Xu, Wang, Jian, Huanming Yang, Wang, Jun, Whitten, Tony, Xu, Xun, and Shi, Qiong

Abstract

The characteristics of repeats and genes, including the distributions of TEs (Figure S8), mRNA, CDS, exon and intron lengths (Figure S9), double-conserved synteny between Dr and Sg genomes (Figure S10), the evolution of Hox genes (Figure S11) and the similarity analysis (Figure S12), protein orthology comparison (Figure S13), and shared orthologous groups among Dr and three Sinocyclocheilus genomes (Figure S14). (PDF 666 kb)

Published
2016
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4. Additional file 4: Figure S8â S14. of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Author

Junxing Yang, Xiaoli Chen, Bai, Jie, Dongming Fang, Qiu, Ying, Wansheng Jiang, Yuan, Hui, Bian, Chao, Lu, Jiang, Shiyang He, Xiaofu Pan, Yaolei Zhang, Xiaoai Wang, Xinxin You, Yongsi Wang, Sun, Ying, Danqing Mao, Liu, Yong, Guangyi Fan, Zhang, He, Xiaoyong Chen, Xinhui Zhang, Lanping Zheng, Jintu Wang, Cheng, Le, Jieming Chen, Zhiqiang Ruan, Li, Jia, Yu, Hui, Peng, Chao, Xingyu Ma, Junmin Xu, He, You, Zhengfeng Xu, Pao Xu, Wang, Jian, Huanming Yang, Wang, Jun, Whitten, Tony, Xu, Xun, and Shi, Qiong

Abstract

The characteristics of repeats and genes, including the distributions of TEs (Figure S8), mRNA, CDS, exon and intron lengths (Figure S9), double-conserved synteny between Dr and Sg genomes (Figure S10), the evolution of Hox genes (Figure S11) and the similarity analysis (Figure S12), protein orthology comparison (Figure S13), and shared orthologous groups among Dr and three Sinocyclocheilus genomes (Figure S14). (PDF 666 kb)

Published
2016
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5. Additional file 9: of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Author

Junxing Yang, Xiaoli Chen, Bai, Jie, Dongming Fang, Qiu, Ying, Wansheng Jiang, Yuan, Hui, Bian, Chao, Lu, Jiang, Shiyang He, Xiaofu Pan, Yaolei Zhang, Xiaoai Wang, Xinxin You, Yongsi Wang, Sun, Ying, Danqing Mao, Liu, Yong, Guangyi Fan, Zhang, He, Xiaoyong Chen, Xinhui Zhang, Lanping Zheng, Jintu Wang, Cheng, Le, Jieming Chen, Zhiqiang Ruan, Li, Jia, Yu, Hui, Peng, Chao, Xingyu Ma, Junmin Xu, He, You, Zhengfeng Xu, Pao Xu, Wang, Jian, Huanming Yang, Wang, Jun, Whitten, Tony, Xu, Xun, and Shi, Qiong

Abstract

Notes S1â S6. The supplementary notes to the article, including the organism background, genome sequencing and assembly (Note S1), genome annotation (Note S2), transcriptome analysis (Note S3), evolutionary analyses (Note S4), morphological comparison analysis (Note S5), and cave adaption analysis in the aspects of vision, pigmentation, scale development, hearing, immune response, circadian rhythm and sense of taste (Note S6). (PDF 668 kb)

Published
2016
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6. Additional file 5: Figure S15â S17. of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Author

Junxing Yang, Xiaoli Chen, Bai, Jie, Dongming Fang, Qiu, Ying, Wansheng Jiang, Yuan, Hui, Bian, Chao, Lu, Jiang, Shiyang He, Xiaofu Pan, Yaolei Zhang, Xiaoai Wang, Xinxin You, Yongsi Wang, Sun, Ying, Danqing Mao, Liu, Yong, Guangyi Fan, Zhang, He, Xiaoyong Chen, Xinhui Zhang, Lanping Zheng, Jintu Wang, Cheng, Le, Jieming Chen, Zhiqiang Ruan, Li, Jia, Yu, Hui, Peng, Chao, Xingyu Ma, Junmin Xu, He, You, Zhengfeng Xu, Pao Xu, Wang, Jian, Huanming Yang, Wang, Jun, Whitten, Tony, Xu, Xun, and Shi, Qiong

Abstract

The phylogenetic trees and divergence time analyses, including the phylogenetic trees based on CDS, protein, 1st, 2nd, 1st and 2nd, 3rd, 4d codon position of codon sequences of 3,181 genes (Figure S15), mitochondrial CDS sequences (Figure S16), and divergence times calibrated by five fossil records (Figure S17). (PDF 170 kb)

Published
2016
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7. Additional file 6: Figure S18â S28. of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Author

Junxing Yang, Xiaoli Chen, Bai, Jie, Dongming Fang, Qiu, Ying, Wansheng Jiang, Yuan, Hui, Bian, Chao, Lu, Jiang, Shiyang He, Xiaofu Pan, Yaolei Zhang, Xiaoai Wang, Xinxin You, Yongsi Wang, Sun, Ying, Danqing Mao, Liu, Yong, Guangyi Fan, Zhang, He, Xiaoyong Chen, Xinhui Zhang, Lanping Zheng, Jintu Wang, Cheng, Le, Jieming Chen, Zhiqiang Ruan, Li, Jia, Yu, Hui, Peng, Chao, Xingyu Ma, Junmin Xu, He, You, Zhengfeng Xu, Pao Xu, Wang, Jian, Huanming Yang, Wang, Jun, Whitten, Tony, Xu, Xun, and Shi, Qiong

Abstract

Analyses to the specific genes, including Tyr (Figure S18), Ush2a (Figure S19), Edar (Figure S20), Oca2 (Figure S21), Mpv17 (Figure S22), Rom1b (Figure S23), Skp1 (Figure S24), and differential expression of eye-related genes, transcriptional factors (Figure S25) and circadian rhythm pathway genes (Figure S26), and similarity cluster of the Tlr gene family (Figure S27) and crystallins (Figure S28). (PDF 1295 kb)

Published
2016
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8. Additional file 3: Figures S2â S7. of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Author

Junxing Yang, Xiaoli Chen, Bai, Jie, Dongming Fang, Qiu, Ying, Wansheng Jiang, Yuan, Hui, Bian, Chao, Lu, Jiang, Shiyang He, Xiaofu Pan, Yaolei Zhang, Xiaoai Wang, Xinxin You, Yongsi Wang, Sun, Ying, Danqing Mao, Liu, Yong, Guangyi Fan, Zhang, He, Xiaoyong Chen, Xinhui Zhang, Lanping Zheng, Jintu Wang, Cheng, Le, Jieming Chen, Zhiqiang Ruan, Li, Jia, Yu, Hui, Peng, Chao, Xingyu Ma, Junmin Xu, He, You, Zhengfeng Xu, Pao Xu, Wang, Jian, Huanming Yang, Wang, Jun, Whitten, Tony, Xu, Xun, and Shi, Qiong

Abstract

The characteristics of genomes, including the 17-mer frequency distribution (Figure S2), GC content distributions (Figure S3), correlation of GC content and sequencing depth (Figure S4), sequencing depth (Figure S5), comparison of the assembled Sg genome with three fosmid sequences (Figure S6), and conserved sequences (Figure S7). (PDF 468 kb)

Published
2016
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9. Additional file 5: Figure S15â S17. of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Author

Junxing Yang, Xiaoli Chen, Bai, Jie, Dongming Fang, Qiu, Ying, Wansheng Jiang, Yuan, Hui, Bian, Chao, Lu, Jiang, Shiyang He, Xiaofu Pan, Yaolei Zhang, Xiaoai Wang, Xinxin You, Yongsi Wang, Sun, Ying, Danqing Mao, Liu, Yong, Guangyi Fan, Zhang, He, Xiaoyong Chen, Xinhui Zhang, Lanping Zheng, Jintu Wang, Cheng, Le, Jieming Chen, Zhiqiang Ruan, Li, Jia, Yu, Hui, Peng, Chao, Xingyu Ma, Junmin Xu, He, You, Zhengfeng Xu, Pao Xu, Wang, Jian, Huanming Yang, Wang, Jun, Whitten, Tony, Xu, Xun, and Shi, Qiong

Abstract

The phylogenetic trees and divergence time analyses, including the phylogenetic trees based on CDS, protein, 1st, 2nd, 1st and 2nd, 3rd, 4d codon position of codon sequences of 3,181 genes (Figure S15), mitochondrial CDS sequences (Figure S16), and divergence times calibrated by five fossil records (Figure S17). (PDF 170 kb)

Published
2016
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10. Additional file 1: Figure S1. of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Author

Junxing Yang, Xiaoli Chen, Bai, Jie, Dongming Fang, Qiu, Ying, Wansheng Jiang, Yuan, Hui, Bian, Chao, Lu, Jiang, Shiyang He, Xiaofu Pan, Yaolei Zhang, Xiaoai Wang, Xinxin You, Yongsi Wang, Sun, Ying, Danqing Mao, Liu, Yong, Guangyi Fan, Zhang, He, Xiaoyong Chen, Xinhui Zhang, Lanping Zheng, Jintu Wang, Cheng, Le, Jieming Chen, Zhiqiang Ruan, Li, Jia, Yu, Hui, Peng, Chao, Xingyu Ma, Junmin Xu, He, You, Zhengfeng Xu, Pao Xu, Wang, Jian, Huanming Yang, Wang, Jun, Whitten, Tony, Xu, Xun, and Shi, Qiong

Abstract

The collection sites of three Sinocyclocheilus species in this study. (PDF 415 kb)

Published
2016
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11. Additional file 1: Figure S1. of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Author

Junxing Yang, Xiaoli Chen, Bai, Jie, Dongming Fang, Qiu, Ying, Wansheng Jiang, Yuan, Hui, Bian, Chao, Lu, Jiang, Shiyang He, Xiaofu Pan, Yaolei Zhang, Xiaoai Wang, Xinxin You, Yongsi Wang, Sun, Ying, Danqing Mao, Liu, Yong, Guangyi Fan, Zhang, He, Xiaoyong Chen, Xinhui Zhang, Lanping Zheng, Jintu Wang, Cheng, Le, Jieming Chen, Zhiqiang Ruan, Li, Jia, Yu, Hui, Peng, Chao, Xingyu Ma, Junmin Xu, He, You, Zhengfeng Xu, Pao Xu, Wang, Jian, Huanming Yang, Wang, Jun, Whitten, Tony, Xu, Xun, and Shi, Qiong

Abstract

The collection sites of three Sinocyclocheilus species in this study. (PDF 415 kb)

Published
2016
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12. Additional file 7: Figure S29â S32. of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Author

Junxing Yang, Xiaoli Chen, Bai, Jie, Dongming Fang, Qiu, Ying, Wansheng Jiang, Yuan, Hui, Bian, Chao, Lu, Jiang, Shiyang He, Xiaofu Pan, Yaolei Zhang, Xiaoai Wang, Xinxin You, Yongsi Wang, Sun, Ying, Danqing Mao, Liu, Yong, Guangyi Fan, Zhang, He, Xiaoyong Chen, Xinhui Zhang, Lanping Zheng, Jintu Wang, Cheng, Le, Jieming Chen, Zhiqiang Ruan, Li, Jia, Yu, Hui, Peng, Chao, Xingyu Ma, Junmin Xu, He, You, Zhengfeng Xu, Pao Xu, Wang, Jian, Huanming Yang, Wang, Jun, Whitten, Tony, Xu, Xun, and Shi, Qiong

Abstract

Morphological analyses of the three Sinocyclocheilus species, including scales (Figure S29), swim bladder (Figure S30), lateral line system (Figure S31) and taste buds (Figure S32). (PDF 434 kb)

Published
2016
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13. Additional file 7: Figure S29â S32. of The Sinocyclocheilus cavefish genome provides insights into cave adaptation

Author

Junxing Yang, Xiaoli Chen, Bai, Jie, Dongming Fang, Qiu, Ying, Wansheng Jiang, Yuan, Hui, Bian, Chao, Lu, Jiang, Shiyang He, Xiaofu Pan, Yaolei Zhang, Xiaoai Wang, Xinxin You, Yongsi Wang, Sun, Ying, Danqing Mao, Liu, Yong, Guangyi Fan, Zhang, He, Xiaoyong Chen, Xinhui Zhang, Lanping Zheng, Jintu Wang, Cheng, Le, Jieming Chen, Zhiqiang Ruan, Li, Jia, Yu, Hui, Peng, Chao, Xingyu Ma, Junmin Xu, He, You, Zhengfeng Xu, Pao Xu, Wang, Jian, Huanming Yang, Wang, Jun, Whitten, Tony, Xu, Xun, and Shi, Qiong

Abstract

Morphological analyses of the three Sinocyclocheilus species, including scales (Figure S29), swim bladder (Figure S30), lateral line system (Figure S31) and taste buds (Figure S32). (PDF 434 kb)

Published
2016
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