Search

Your search keyword '"Utpatel, Christian"' showing total 13 results
Start Over Author "Utpatel, Christian" Publisher figshare
13 results on '"Utpatel, Christian"'

1. Additional file 7 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

Author

Diricks, Margo, Kohl, Thomas A., K��ding, Nadja, Leshchinskiy, Vladislav, Hauswaldt, Susanne, Jim��nez V��zquez, Omar, Utpatel, Christian, Niemann, Stefan, Rupp, Jan, and Merker, Matthias

Abstract

Additional file 7: Figure S2. Phylogenetic tree comprising training set strains and misclassified strains from SRA.

Published
2022
Full Text
View/download PDF

2. Additional file 1 of Whole genome sequencing-based classification of human-related Haemophilus species and detection of antimicrobial resistance genes

Author

Diricks, Margo, Kohl, Thomas A., K��ding, Nadja, Leshchinskiy, Vladislav, Hauswaldt, Susanne, Jim��nez V��zquez, Omar, Utpatel, Christian, Niemann, Stefan, Rupp, Jan, and Merker, Matthias

Abstract

Additional file 1: Table S1. Summary of the number of short read datasets used for each species in the training set, evaluation set, and German cohort.

Published
2022
Full Text
View/download PDF

4. Additional file 1 of Biofilm reduction potential of 0.02% polyhexanide irrigation solution in several types of urethral catheters

Author

Brill, Florian H. H., Hambach, Julia, Utpatel, Christian, Mogrovejo, Diana C., Gabriel, Henrik, Jan-Hendrik Klock, Joerg Steinmann, and Arndt, Andreas

Abstract

Additional file 1: Table S1. Cell counts of rinsing solutions and of swab samples after different treatments. The values of log10 CFU shown are mean of 10 parallel replications.

Published
2021
Full Text
View/download PDF

5. Additional file 6 of Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences

Author

Cornejo-Granados, Fernanda, Kohl, Thomas A., Sotomayor, Flor Vásquez, Andres, Sönke, Hernández-Pando, Rogelio, Hurtado-Ramirez, Juan Manuel, Utpatel, Christian, Niemann, Stefan, Maurer, Florian P., and Ochoa-Leyva, Adrian

Abstract

Additional file 6: Figure S2. GO enrichment analysis of enzymes for M. abscessus ATCC19977. Percentage of sequences annotated with each GO term for the secreted proteins (blue) and the complete proteins in the genome (red).

Published
2021
Full Text
View/download PDF

6. Additional file 4 of Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences

Author

Cornejo-Granados, Fernanda, Kohl, Thomas A., Sotomayor, Flor Vásquez, Andres, Sönke, Hernández-Pando, Rogelio, Hurtado-Ramirez, Juan Manuel, Utpatel, Christian, Niemann, Stefan, Maurer, Florian P., and Ochoa-Leyva, Adrian

Abstract

Additional file 4: Table S3. Comparison of the core secretome of each subspecies vs NCBI genomes.

Published
2021
Full Text
View/download PDF

7. Additional file 3 of Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences

Author

Cornejo-Granados, Fernanda, Kohl, Thomas A., Sotomayor, Flor Vásquez, Andres, Sönke, Hernández-Pando, Rogelio, Hurtado-Ramirez, Juan Manuel, Utpatel, Christian, Niemann, Stefan, Maurer, Florian P., and Ochoa-Leyva, Adrian

Abstract

Additional file 3: Table S2. Statistic data of the de novo assemblies for the sequenced isolates.

Published
2021
Full Text
View/download PDF

8. Additional file 5 of Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences

Author

Cornejo-Granados, Fernanda, Kohl, Thomas A., Sotomayor, Flor Vásquez, Andres, Sönke, Hernández-Pando, Rogelio, Hurtado-Ramirez, Juan Manuel, Utpatel, Christian, Niemann, Stefan, Maurer, Florian P., and Ochoa-Leyva, Adrian

Abstract

Additional file 5: Table S4. AAR values for random constructed secretomes of the rough and smooth phenotypes.

Published
2021
Full Text
View/download PDF

9. Additional file 2 of Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences

Author

Cornejo-Granados, Fernanda, Kohl, Thomas A., Sotomayor, Flor Vásquez, Andres, Sönke, Hernández-Pando, Rogelio, Hurtado-Ramirez, Juan Manuel, Utpatel, Christian, Niemann, Stefan, Maurer, Florian P., and Ochoa-Leyva, Adrian

Abstract

Additional file 2: Figure S1. Bioinformatics pipeline to indentify and analyze the secreted proteins of M. abscessus.

Published
2021
Full Text
View/download PDF

10. Additional file 1 of Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences

Author

Cornejo-Granados, Fernanda, Kohl, Thomas A., Sotomayor, Flor Vásquez, Andres, Sönke, Hernández-Pando, Rogelio, Hurtado-Ramirez, Juan Manuel, Utpatel, Christian, Niemann, Stefan, Maurer, Florian P., and Ochoa-Leyva, Adrian

Subjects
bacteria, bacterial infections and mycoses
Abstract

Additional file 1: Table S1. Complete metadata of the 15 clinical isolates of M. abscessus genomes sequenced.

Published
2021
Full Text
View/download PDF

11. Additional file 7 of Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences

Author

Cornejo-Granados, Fernanda, Kohl, Thomas A., Sotomayor, Flor Vásquez, Andres, Sönke, Hernández-Pando, Rogelio, Hurtado-Ramirez, Juan Manuel, Utpatel, Christian, Niemann, Stefan, Maurer, Florian P., and Ochoa-Leyva, Adrian

Subjects
bacteria, bacterial infections and mycoses
Abstract

Additional file 7: Table S5. List of 222 M. abscessus proteins with homologues in M. tuberculosis H37Rv and with previous experimental support for secretion according to Cornejo-Granados et al. [19].

Published
2021
Full Text
View/download PDF

12. Additional file 2 of MDR M. tuberculosis outbreak clone in Eswatini missed by Xpert has elevated bedaquiline resistance dated to the pre-treatment era

Author

Beckert, Patrick, Sanchez-Padilla, Elisabeth, Merker, Matthias, Dreyer, Viola, Kohl, Thomas A., Utpatel, Christian, Köser, Claudio U., Barilar, Ivan, Ismail, Nazir, Shaheed Vally Omar, Klopper, Marisa, Warren, Robin M., Hoffmann, Harald, Gugu Maphalala, Ardizzoni, Elisa, Jong, Bouke C. De, Kerschberger, Bernhard, Schramm, Birgit, Andres, Sönke, Kranzer, Katharina, Maurer, Florian P., Bonnet, Maryline, and Niemann, Stefan

Abstract

Additional file 2. Supplemental methods and description of resistance mutations.

Published
2020
Full Text
View/download PDF

13. Additional file 3 of MDR M. tuberculosis outbreak clone in Eswatini missed by Xpert has elevated bedaquiline resistance dated to the pre-treatment era

Author

Beckert, Patrick, Sanchez-Padilla, Elisabeth, Merker, Matthias, Dreyer, Viola, Kohl, Thomas A., Utpatel, Christian, Köser, Claudio U., Barilar, Ivan, Ismail, Nazir, Shaheed Vally Omar, Klopper, Marisa, Warren, Robin M., Hoffmann, Harald, Gugu Maphalala, Ardizzoni, Elisa, Jong, Bouke C. De, Kerschberger, Bernhard, Schramm, Birgit, Andres, Sönke, Kranzer, Katharina, Maurer, Florian P., Bonnet, Maryline, and Niemann, Stefan

Abstract

Additional file 3: Fig. S1. Phylogenetic diversity and drug susceptibility of the 412 M. tuberculosis complex isolates from Eswatini. Fig. S2. Lineage distribution across Eswatini. Fig. S3. Isolates selected for further whole-genome sequencing analysis.

Published
2020
Full Text
View/download PDF

Catalog

Books, media, physical & digital resources
See catalog results