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11 results on '"Ulfah, Maria"'

1. Additional file 6: Figure S5. of Genetic features of red and green junglefowls and relationship with Indonesian native chickens Sumatera and Kedu Hitam

Author

Ulfah, Maria, Ryouka Kawahara-Miki, Achmad Farajalllah, Muladno Muladno, Dorshorst, Ben, Martin, Alison, and Kono, Tomohiro

Abstract

Distribution of gene ontology (GO) slim terms associated with non-synonymous single nucleotide polymorphism (SNP) containing genes, which are common in each breed. GO terms were categorized by biological process, cellular component, and molecular function, as indicated. Abbreviations are defined in Fig. 2. (PDF 89 kb)

Published
2016
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3. Additional file 2: Figure S2. of Genetic features of red and green junglefowls and relationship with Indonesian native chickens Sumatera and Kedu Hitam

Author

Ulfah, Maria, Ryouka Kawahara-Miki, Achmad Farajalllah, Muladno Muladno, Dorshorst, Ben, Martin, Alison, and Kono, Tomohiro

Abstract

Genome coverage averaged in each breed. Data are percentage of regions covered by ≥ 1 (red), ≥ 3 (light blue), ≥ 5 (blue), and ≥ 10 (green) sequence reads in each chromosome. Abbreviations are defined in Fig. 2. (PDF 106 kb)

Published
2016
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4. Additional file 1: Figure S1. of Genetic features of red and green junglefowls and relationship with Indonesian native chickens Sumatera and Kedu Hitam

Author

Ulfah, Maria, Ryouka Kawahara-Miki, Achmad Farajalllah, Muladno Muladno, Dorshorst, Ben, Martin, Alison, and Kono, Tomohiro

Abstract

Mapping. Data are percentage of sequence reads mapped to unique regions in the reference genome (blue), to multiple regions (red), and not mapped (green). Abbreviations are defined in Figure 2. Numbers after the breed name are sample numbers. (PDF 89 kb)

Published
2016
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6. Additional file 6: Figure S5. of Genetic features of red and green junglefowls and relationship with Indonesian native chickens Sumatera and Kedu Hitam

Author

Ulfah, Maria, Ryouka Kawahara-Miki, Achmad Farajalllah, Muladno Muladno, Dorshorst, Ben, Martin, Alison, and Kono, Tomohiro

Abstract

Distribution of gene ontology (GO) slim terms associated with non-synonymous single nucleotide polymorphism (SNP) containing genes, which are common in each breed. GO terms were categorized by biological process, cellular component, and molecular function, as indicated. Abbreviations are defined in Fig. 2. (PDF 89 kb)

Published
2016
Full Text
View/download PDF

7. Additional file 4: Figure S4. of Genetic features of red and green junglefowls and relationship with Indonesian native chickens Sumatera and Kedu Hitam

Author

Ulfah, Maria, Ryouka Kawahara-Miki, Achmad Farajalllah, Muladno Muladno, Dorshorst, Ben, Martin, Alison, and Kono, Tomohiro

Abstract

Distribution of SNPs (blue), deletions (green), and insertions (yellow) in the genome. The number in each region is averaged in each breed. Upstream and downstream variations are within 5 kb of genes. Abbreviations are defined in Fig. 2. (PDF 210 kb)

Published
2016
Full Text
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9. Additional file 4: Figure S4. of Genetic features of red and green junglefowls and relationship with Indonesian native chickens Sumatera and Kedu Hitam

Author

Ulfah, Maria, Ryouka Kawahara-Miki, Achmad Farajalllah, Muladno Muladno, Dorshorst, Ben, Martin, Alison, and Kono, Tomohiro

Abstract

Distribution of SNPs (blue), deletions (green), and insertions (yellow) in the genome. The number in each region is averaged in each breed. Upstream and downstream variations are within 5 kb of genes. Abbreviations are defined in Fig. 2. (PDF 210 kb)

Published
2016
Full Text
View/download PDF

10. Additional file 2: Figure S2. of Genetic features of red and green junglefowls and relationship with Indonesian native chickens Sumatera and Kedu Hitam

Author

Ulfah, Maria, Ryouka Kawahara-Miki, Achmad Farajalllah, Muladno Muladno, Dorshorst, Ben, Martin, Alison, and Kono, Tomohiro

Abstract

Genome coverage averaged in each breed. Data are percentage of regions covered by ≥ 1 (red), ≥ 3 (light blue), ≥ 5 (blue), and ≥ 10 (green) sequence reads in each chromosome. Abbreviations are defined in Fig. 2. (PDF 106 kb)

Published
2016
Full Text
View/download PDF

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