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1. Additional file 24: of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Text A. List of scaffolds as marked from START to END in Fig. 4. Text B. List of IDs of transcripts more abundant in Krishna as compared to Rama subtype (from top to bottom) marked in Fig. 5a. Text C. List of IDs of transcripts more abundant in Rama as compared to Krishna subtype (from top to bottom) as marked in Fig. 5b. Text D. Multiple sequence alignment of amyrin synthases with hits in Tulsi genome.

Published
2015
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2. Additional file 8: Table S4. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Presence of essential genes in O.tenuiflorum (Tulsi) at three levels; a) in only paired end assembly (ab-initio gene prediction), b) in paired end and mate-pair assemblyâ s Level 2 [evidence from RNAseq, EST and known tulsi genes], c) in paired end and mate-paired assemblyâ s Level 1 (gene prediction).

Published
2015
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3. Additional file 12: Table S5. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Repeat elements identified in Tulsi genome assembly and classified in different groups of repeats.

Published
2015
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4. Additional file 20: Figure S12. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Pathways of all the 14 important medicinal metabolites of the Tulsi genome which were studied in detail.

Published
2015
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5. Additional file 8: Table S4. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Presence of essential genes in O.tenuiflorum (Tulsi) at three levels; a) in only paired end assembly (ab-initio gene prediction), b) in paired end and mate-pair assemblyâ s Level 2 [evidence from RNAseq, EST and known tulsi genes], c) in paired end and mate-paired assemblyâ s Level 1 (gene prediction).

Published
2015
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6. Additional file 6: Table S2. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Statistics of scaffold length comparison from assemblies of PE and MPâ +â PE together.

Published
2015
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7. Additional file 7: Table S3. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Completeness of assembly and presence of essential genes by CEGMA results for O. tenuiflorum at two levels; (a) only in PE assembly (b) in PEâ +â PM assembly.

Published
2015
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8. Additional file 22: Table S10. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Sequences of putative terpene synthases in O. tenuiflorum genome.

Published
2015
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9. Additional file 5: Table S1. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Scaffold lengths distribution in the MPâ +â PE and PE assemblies.

Published
2015
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10. Additional file 7: Table S3. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Completeness of assembly and presence of essential genes by CEGMA results for O. tenuiflorum at two levels; (a) only in PE assembly (b) in PEâ +â PM assembly.

Published
2015
Full Text
View/download PDF

11. Additional file 5: Table S1. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Scaffold lengths distribution in the MPâ +â PE and PE assemblies.

Published
2015
Full Text
View/download PDF

12. Additional file 6: Table S2. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Statistics of scaffold length comparison from assemblies of PE and MPâ +â PE together.

Published
2015
Full Text
View/download PDF

13. Additional file 22: Table S10. of Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties

Author

Upadhyay, Atul, Chacko, Anita, A. Gandhimathi, Pritha Ghosh, K. Harini, Agnel Joseph, Adwait Joshi, Snehal Karpe, Kaushik, Swati, Nagesh Kuravadi, Lingu, Chandana, J. Mahita, Ramya Malarini, Sony Malhotra, Malini, Manoharan, Oommen Mathew, Eshita Mutt, Mahantesha Naika, Sathyanarayanan Nitish, Shaik Pasha, Upadhyayula Raghavender, Anantharamanan Rajamani, S Shilpa, Shingate, Prashant, Heikham Singh, Anshul Sukhwal, Sunitha, Margaret, Manojkumar Sumathi, S. Ramaswamy, Malali Gowda, and Sowdhamini, Ramanathan

Abstract

Sequences of putative terpene synthases in O. tenuiflorum genome.

Published
2015
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