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Additional file 1: Table S1. Sequencing output of soil bacterial sequences. Table S2. Sequencing output of soil fungal sequences. Fig. S1. Rarefaction curves of soil microbial communities based on OTUs at the 97% similarity cut-off level for individual samples. (a) and (b) are the rarefaction curves of OTU for bacterial and fungal communities, respectively. AP0, AP1 and AP2 represent soil with continuously cropping histories of A. paniculata for 0, 1 and 2 years. “a” and “b” mean the two replicates.

Figure S1. Morphology characteristics of different Pogostemon cablin cultivars, including (a) P. cablin cv. ‘Zhanxiang’, (b) P. cablin cv. ‘Yangjiang’, and (c) P. cablin cv. ‘Indonesia’. (DOCX 458 kb)

Figure S5. Expression changes of PatMYCs in Pogostemon cablin induced by MeJA. (DOCX 184 kb)

Figure S3. Homologous species distribution of P. cablin annotated in Nr database. (DOCX 152 kb)

Figure S4. Expression changes of JAZ proteins in Pogostemon cablin induced by MeJA. The heat map showing log2(FPKM+â 1) values of each protein. (DOCX 126 kb)

Table Information for 86 C. indicum samples. (DOC 121 kb)

Some information extracted from the doctoral thesis about phenotypic difference betwwen two C. indicum germplasms. (DOCX 2701 kb)