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Additional file 4 Table S6. Description of expected MTAs using original SNPs for agronomic traits of Iranian wheat accessions exposed to the well-watered condition. Table S7. Description of expected MTAs using original SNPs for agronomic traits of Iranian wheat accessions exposed to the rain-fed condition. Table S8. Description of expected MTAs using imputed SNPs for agronomic traits of Iranian wheat accessions exposed to the well-watered condition. Table S9. Description of expected MTAs using imputed SNPs for agronomic traits of Iranian wheat accessions exposed to the rain-fed condition.

Additional file 3 Fig. S1. Climate condition include precipitation and temperature of field trail site during the 2016–17 and 2017–18 cropping seasons. Fig. S2. The pattern of LD decay in different chromosomes of genome A in T. aestivum based on original SNPs. Fig. S3. The pattern of LD decay in different chromosomes of genome B in T. aestivum based on original SNPs. Fig. S4. The pattern of LD decay in different chromosomes of genome D in T. aestivum based on original SNPs.

Additional file 1 Table S1. The information of Iranian wheat accessions including varieties released between 1942 and 2014, and landraces collected between 1931 and 1968