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1. Additional file 9 of On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Author

Ciani, Elena, Mastrangelo, Salvatore, Silva, Anne Da, Marroni, Fabio, Ferenčaković, Maja, Ajmone-Marsan, Paolo, Baird, Hayley, Barbato, Mario, Colli, Licia, Delvento, Chiara, Dovenski, Toni, Gorjanc, Gregor, Hall, Stephen J. G., Hoda, Anila, Li, Meng-Hua, Božidarka Marković, McEwan, John, Moradi, Mohammad H., Otsanda Ruiz-Larrañaga, Ružić-Muslić, Dragana, Šalamon, Dragica, Simčič, Mojca, Stepanek, Ondrej, Curik, Ino, Cubric-Curik, Vlatka, and Lenstra, Johannes A.

Abstract

Additional file 9: Figure S5. Supervised PCA of 546 animals as in Fig. 2b, showing svPC1 vs. svPC3 averaged per breed.

Published
2020
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2. Additional file 7 of On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Author

Ciani, Elena, Mastrangelo, Salvatore, Silva, Anne Da, Marroni, Fabio, Ferenčaković, Maja, Ajmone-Marsan, Paolo, Baird, Hayley, Barbato, Mario, Colli, Licia, Delvento, Chiara, Dovenski, Toni, Gorjanc, Gregor, Hall, Stephen J. G., Hoda, Anila, Li, Meng-Hua, Božidarka Marković, McEwan, John, Moradi, Mohammad H., Otsanda Ruiz-Larrañaga, Ružić-Muslić, Dragana, Šalamon, Dragica, Simčič, Mojca, Stepanek, Ondrej, Curik, Ino, Cubric-Curik, Vlatka, and Lenstra, Johannes A.

Abstract

Additional file 7: Figure S3. FineStructure clustering of eastern and southeastern European sheep breeds. The color of each bin in the matrix indicates the number of “genomic chunks” copied from a donor (columns) to a recipient individual (rows).

Published
2020
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3. Additional file 14 of On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Author

Ciani, Elena, Mastrangelo, Salvatore, Silva, Anne Da, Marroni, Fabio, Ferenčaković, Maja, Ajmone-Marsan, Paolo, Baird, Hayley, Barbato, Mario, Colli, Licia, Delvento, Chiara, Dovenski, Toni, Gorjanc, Gregor, Hall, Stephen J. G., Hoda, Anila, Li, Meng-Hua, Božidarka Marković, McEwan, John, Moradi, Mohammad H., Otsanda Ruiz-Larrañaga, Ružić-Muslić, Dragana, Šalamon, Dragica, Simčič, Mojca, Stepanek, Ondrej, Curik, Ino, Cubric-Curik, Vlatka, and Lenstra, Johannes A.

Abstract

Additional file 14: Figure S9. Neighbor-net graphs of 17 regional groups of breeds (Additional file 12 B) with (A) AMF, (B) EMF, (C, D) both AMF and EMF; (D, E) pattern obtained by increasing the AMF-EFM distance in order to suppress the EMF-AMF clustering and to show different affinities of EMF and AMF for European domestic sheep.

Published
2020
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4. Additional file 8 of On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Author

Ciani, Elena, Mastrangelo, Salvatore, Silva, Anne Da, Marroni, Fabio, Ferenčaković, Maja, Ajmone-Marsan, Paolo, Baird, Hayley, Barbato, Mario, Colli, Licia, Delvento, Chiara, Dovenski, Toni, Gorjanc, Gregor, Hall, Stephen J. G., Hoda, Anila, Li, Meng-Hua, Božidarka Marković, McEwan, John, Moradi, Mohammad H., Otsanda Ruiz-Larrañaga, Ružić-Muslić, Dragana, Šalamon, Dragica, Simčič, Mojca, Stepanek, Ondrej, Curik, Ino, Cubric-Curik, Vlatka, and Lenstra, Johannes A.

Abstract

Additional file 8: Figure S4. Left panels: normal PCA plots of 525 sheep (≤ 6 per breed) including the inbred EFB, KCH, VBS. Right panels: supervised PCA of 546 sheep, including three mouflon populations, in which EFB, KCH and VBS as well as the mouflons have been excluded for calculation of the principal components (svPC1, svPC2 and svPC3).

Published
2020
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5. Additional file 5 of On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Author

Ciani, Elena, Mastrangelo, Salvatore, Silva, Anne Da, Marroni, Fabio, Ferenčaković, Maja, Ajmone-Marsan, Paolo, Baird, Hayley, Barbato, Mario, Colli, Licia, Delvento, Chiara, Dovenski, Toni, Gorjanc, Gregor, Hall, Stephen J. G., Hoda, Anila, Li, Meng-Hua, Božidarka Marković, McEwan, John, Moradi, Mohammad H., Otsanda Ruiz-Larrañaga, Ružić-Muslić, Dragana, Šalamon, Dragica, Simčič, Mojca, Stepanek, Ondrej, Curik, Ino, Cubric-Curik, Vlatka, and Lenstra, Johannes A.

Abstract

Additional file 5: Figure S1. Inverse linear relationship of observed heterozygosity and the total ROH coverage FROH, showing relatively low heterozygosity values for AMF, SMF and fat-tailed sheep.

Published
2020
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6. Additional file 11 of On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Author

Ciani, Elena, Mastrangelo, Salvatore, Silva, Anne Da, Marroni, Fabio, Ferenčaković, Maja, Ajmone-Marsan, Paolo, Baird, Hayley, Barbato, Mario, Colli, Licia, Delvento, Chiara, Dovenski, Toni, Gorjanc, Gregor, Hall, Stephen J. G., Hoda, Anila, Li, Meng-Hua, Božidarka Marković, McEwan, John, Moradi, Mohammad H., Otsanda Ruiz-Larrañaga, Ružić-Muslić, Dragana, Šalamon, Dragica, Simčič, Mojca, Stepanek, Ondrej, Curik, Ino, Cubric-Curik, Vlatka, and Lenstra, Johannes A.

Abstract

Additional file 11: Figure S7. Supervised PCA of 546 animals in which the PC (svPC1, svPC2) were calculated based on the indicated fat-tailed, Nordic and Spanish sheep.

Published
2020
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7. Additional file 10 of On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Author

Ciani, Elena, Mastrangelo, Salvatore, Silva, Anne Da, Marroni, Fabio, Ferenčaković, Maja, Ajmone-Marsan, Paolo, Baird, Hayley, Barbato, Mario, Colli, Licia, Delvento, Chiara, Dovenski, Toni, Gorjanc, Gregor, Hall, Stephen J. G., Hoda, Anila, Li, Meng-Hua, Božidarka Marković, McEwan, John, Moradi, Mohammad H., Otsanda Ruiz-Larrañaga, Ružić-Muslić, Dragana, Šalamon, Dragica, Simčič, Mojca, Stepanek, Ondrej, Curik, Ino, Cubric-Curik, Vlatka, and Lenstra, Johannes A.

Abstract

Additional file 10: Figure S6. Spatial PCA of 507 domestic sheep without EFB, KCH and VBS, which were found to dominate the sPC2 and sPC3 just as for in the normal PCA (Additional file 8: Figure S4 left panels). The three methods of triangulation, indicated above the plots, give essentially the same results, which are similar to the supervised PCA pattern (see Additional file 8: Figure S4 right panels).

Published
2020
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8. Additional file 16 of On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Author

Ciani, Elena, Mastrangelo, Salvatore, Silva, Anne Da, Marroni, Fabio, Ferenčaković, Maja, Ajmone-Marsan, Paolo, Baird, Hayley, Barbato, Mario, Colli, Licia, Delvento, Chiara, Dovenski, Toni, Gorjanc, Gregor, Hall, Stephen J. G., Hoda, Anila, Li, Meng-Hua, Božidarka Marković, McEwan, John, Moradi, Mohammad H., Otsanda Ruiz-Larrañaga, Ružić-Muslić, Dragana, Šalamon, Dragica, Simčič, Mojca, Stepanek, Ondrej, Curik, Ino, Cubric-Curik, Vlatka, and Lenstra, Johannes A.

Abstract

Additional file 16. Methodological comparisons and considerations [22, 50, 53, 54, 56, 64, 65, 77].

Published
2020
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9. Additional file 15 of On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Author

Ciani, Elena, Mastrangelo, Salvatore, Silva, Anne Da, Marroni, Fabio, Ferenčaković, Maja, Ajmone-Marsan, Paolo, Baird, Hayley, Barbato, Mario, Colli, Licia, Delvento, Chiara, Dovenski, Toni, Gorjanc, Gregor, Hall, Stephen J. G., Hoda, Anila, Li, Meng-Hua, Božidarka Marković, McEwan, John, Moradi, Mohammad H., Otsanda Ruiz-Larrañaga, Ružić-Muslić, Dragana, Šalamon, Dragica, Simčič, Mojca, Stepanek, Ondrej, Curik, Ino, Cubric-Curik, Vlatka, and Lenstra, Johannes A.

Abstract

Additional file 15: Figure S10. TreeMix trees without and with 6, 10 and 20 migrations and plots of the proportions of the variance explained (f-indices) and likelihoods at different m values. Coloured lines indicate inferred migrations with a weight according to the color scale.

Published
2020
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10. Additional file 13 of On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Author

Ciani, Elena, Mastrangelo, Salvatore, Silva, Anne Da, Marroni, Fabio, Ferenčaković, Maja, Ajmone-Marsan, Paolo, Baird, Hayley, Barbato, Mario, Colli, Licia, Delvento, Chiara, Dovenski, Toni, Gorjanc, Gregor, Hall, Stephen J. G., Hoda, Anila, Li, Meng-Hua, Božidarka Marković, McEwan, John, Moradi, Mohammad H., Otsanda Ruiz-Larrañaga, Ružić-Muslić, Dragana, Šalamon, Dragica, Simčič, Mojca, Stepanek, Ondrej, Curik, Ino, Cubric-Curik, Vlatka, and Lenstra, Johannes A.

Abstract

Additional file 13: Figure S8. Neighbor-net graph of Reynolds’ distances between breeds or regional combinations of closely related breeds (see Additional file 12: Table S5).

Published
2020
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11. Additional file 6 of On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

Author

Ciani, Elena, Mastrangelo, Salvatore, Silva, Anne Da, Marroni, Fabio, Ferenčaković, Maja, Ajmone-Marsan, Paolo, Baird, Hayley, Barbato, Mario, Colli, Licia, Delvento, Chiara, Dovenski, Toni, Gorjanc, Gregor, Hall, Stephen J. G., Hoda, Anila, Li, Meng-Hua, Božidarka Marković, McEwan, John, Moradi, Mohammad H., Otsanda Ruiz-Larrañaga, Ružić-Muslić, Dragana, Šalamon, Dragica, Simčič, Mojca, Stepanek, Ondrej, Curik, Ino, Cubric-Curik, Vlatka, and Lenstra, Johannes A.

Abstract

Additional file 6: Figure S2. Neighbour-joining tree visualizing the allele-sharing distances of the Balkan sheep (see Fig. 1) or (see Additional file 1: Table S1) for the breed codes). Breeds that are dispersed over different branches of the tree are indicated by colored lines.

Published
2020
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12. MOESM15 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Author

Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Minhui Chen, CrisĂ, Alessandra, Daly, Kevin, Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes, Rosen, Benjamin, Vajana, Elia, Catillo, Gennaro, StĂŠphane Joost, Nicolazzi, Ezequiel, Rochat, Estelle, Rothschild, Max, Servin, Bertrand, Sonstegard, Tad, Steri, Roberto, Tassell, Curtis, Ajmone-Marsan, Paolo, Crepaldi, Paola, and Stella, Alessandra

Abstract

Additional file 15: Figure S8. Fraction of variance explained by repeated runs of Treemix software on the working dataset. Treemix software was run for a number of postulated migration edges, m, increasing from m0 to m11 (3 replicates per m).

Published
2018
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13. MOESM14 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Author

Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Minhui Chen, Crisà, Alessandra, Daly, Kevin, Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes, Rosen, Benjamin, Vajana, Elia, Catillo, Gennaro, Joost, Stéphane, Nicolazzi, Ezequiel, Rochat, Estelle, Rothschild, Max, Servin, Bertrand, Sonstegard, Tad, Steri, Roberto, Tassell, Curtis, Ajmone-Marsan, Paolo, Crepaldi, Paola, and Stella, Alessandra

Abstract

Additional file 14. Geographical distribution pattern of Chromopainter clustering. Results are shown for clustering solutions for K values from 2 to 14, K = 20 and K = 50.

Published
2018
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14. MOESM3 of Patterns of homozygosity in insular and continental goat breeds

Author

Cardoso, Taina, Amills, Marcel, Bertolini, Francesca, Rothschild, Max, Marras, Gabriele, Boink, Geert, Jordana, Jordi, Capote, Juan, Carolan, Sean, JĂłn Hallsson, Kantanen, Juha, Agueda Pons, and Lenstra, Johannes

Abstract

Additional file 3: Figure S3. Relationship between observed heterozygosity versus (left) ROH coverage or (right) within-population allele-sharing distances. Red and dark blue indicate insular and continental breeds, respectively, with high homozygosity. Pink and light blue indicate insular and continental breeds, respectively, with low or modest homozygosity.

Published
2018
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15. MOESM5 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Author

Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Minhui Chen, CrisĂ, Alessandra, Daly, Kevin, Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes, Rosen, Benjamin, Vajana, Elia, Catillo, Gennaro, StĂŠphane Joost, Nicolazzi, Ezequiel, Rochat, Estelle, Rothschild, Max, Servin, Bertrand, Sonstegard, Tad, Steri, Roberto, Tassell, Curtis, Ajmone-Marsan, Paolo, Crepaldi, Paola, and Stella, Alessandra

Abstract

Additional file 5: Figure S2. Heatmap of pairwise FST values. Variation of FST values calculated pairwise between breeds with Arlequin software. The corresponding numerical values and their statistical significance are given in Table S2 (see Additional file 4: Table S2).

Published
2018
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16. MOESM13 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Author

Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Minhui Chen, CrisĂ, Alessandra, Daly, Kevin, Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes, Rosen, Benjamin, Vajana, Elia, Catillo, Gennaro, StĂŠphane Joost, Nicolazzi, Ezequiel, Rochat, Estelle, Rothschild, Max, Servin, Bertrand, Sonstegard, Tad, Steri, Roberto, Tassell, Curtis, Ajmone-Marsan, Paolo, Crepaldi, Paola, and Stella, Alessandra

Abstract

Additional file 13: Figure S7. Detail of the cluster structure on top of Chromopainter coancestry matrix in Figure S6 [see Additional file 12 Figure S6]. The cluster tree is turned counterclockwise with respect to Figure S6 (see Additional file 12: Figure S6). The rectangles highlight clusters of individuals from the same breed or with the same geographical provenance. The colouring of the boxes is only for visual convenience and there is no strict correspondence between colour and geographical provenance.

Published
2018
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17. MOESM2 of Patterns of homozygosity in insular and continental goat breeds

Author

Cardoso, Taina, Amills, Marcel, Bertolini, Francesca, Rothschild, Max, Marras, Gabriele, Boink, Geert, Jordana, Jordi, Capote, Juan, Carolan, Sean, JĂłn Hallsson, Kantanen, Juha, Agueda Pons, and Lenstra, Johannes

Abstract

Additional file 2: Figure S2. PCA plot of 25 insular and continental goats for coordinate PC1 against PC2, PC3 and PC4 averaged across individuals. Red and dark blue indicate insular and continental breeds, respectively, with high homozygosity. Pink and light blue indicate insular and continental breeds, respectively, with low or modest homozygosity.

Published
2018
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18. MOESM7 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Author

Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Minhui Chen, CrisĂ, Alessandra, Daly, Kevin, Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes, Rosen, Benjamin, Vajana, Elia, Catillo, Gennaro, StĂŠphane Joost, Nicolazzi, Ezequiel, Rochat, Estelle, Rothschild, Max, Servin, Bertrand, Sonstegard, Tad, Steri, Roberto, Tassell, Curtis, Ajmone-Marsan, Paolo, Crepaldi, Paola, and Stella, Alessandra

Abstract

Additional file 7: Figure S3. Effective population size (Ne). Trends in effective population size, Ne, estimated with SNeP software for a number of generations between 13 and 959. For further details (see Additional files 2 and 8).

Published
2018
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19. MOESM1 of Patterns of homozygosity in insular and continental goat breeds

Author

Cardoso, Taina, Amills, Marcel, Bertolini, Francesca, Rothschild, Max, Marras, Gabriele, Boink, Geert, Jordana, Jordi, Capote, Juan, Carolan, Sean, JĂłn Hallsson, Kantanen, Juha, Agueda Pons, and Lenstra, Johannes

Abstract

Additional file 1: Figure S1. Geographic locations of the insular and continental breeds considered in our study. Red and dark blue indicate insular and continental breeds, respectively, with high homozygosity. Pink and light blue indicate insular and continental breeds, respectively, with low or modest homozygosity.

Published
2018
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20. MOESM1 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Author

Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Minhui Chen, Crisà, Alessandra, Daly, Kevin, Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes, Rosen, Benjamin, Vajana, Elia, Catillo, Gennaro, Joost, Stéphane, Nicolazzi, Ezequiel, Rochat, Estelle, Rothschild, Max, Servin, Bertrand, Sonstegard, Tad, Steri, Roberto, Tassell, Curtis, Ajmone-Marsan, Paolo, Crepaldi, Paola, and Stella, Alessandra

Abstract

Additional file 1: Table S1. Summary statistics calculated over the whole set of AdaptMap goat populations. Breed code including country code, breed name, continent and country of provenance, longitude, latitude, number of individuals pre-QC, post-QC and in the working dataset (WD), number of polymorphic loci, observed heterozygosity (HO), expected heterozygosity (HE) values corrected over the number of usable SNPs, inbreeding coefficient (FIS). Underlined figures indicate thinning of large population sizes. Statistical significance: *P

Published
2018
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21. MOESM8 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Author

Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Minhui Chen, Crisà, Alessandra, Daly, Kevin, Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes, Rosen, Benjamin, Vajana, Elia, Catillo, Gennaro, Joost, Stéphane, Nicolazzi, Ezequiel, Rochat, Estelle, Rothschild, Max, Servin, Bertrand, Sonstegard, Tad, Steri, Roberto, Tassell, Curtis, Ajmone-Marsan, Paolo, Crepaldi, Paola, and Stella, Alessandra

Abstract

Additional file 8. Single-generation plots of Ne values calculated with SNeP software. The single panels correspond to effective population size values, Ne, estimated for a number of generations before present varying between 13 and 959. Breed circles are coloured according to the continent of provenance: blue = west Asia, green = Europe, red = Africa, light blue = South America, orange = Oceania.

Published
2018
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22. MOESM6 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Author

Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Minhui Chen, CrisĂ, Alessandra, Daly, Kevin, Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes, Rosen, Benjamin, Vajana, Elia, Catillo, Gennaro, StĂŠphane Joost, Nicolazzi, Ezequiel, Rochat, Estelle, Rothschild, Max, Servin, Bertrand, Sonstegard, Tad, Steri, Roberto, Tassell, Curtis, Ajmone-Marsan, Paolo, Crepaldi, Paola, and Stella, Alessandra

Abstract

Additional file 6: Table S3. Distribution of the pairs of SNPs in Linkage Disequilibrium between populations. The number of SNPs in LD have been calculated between populations within continent for (a) Africa; (b) Europe, and (c) West Asia. The first and second column from the left respectively indicate the number of populations in which a specific pair of SNPs was found in linkage and the corresponding percentage calculated over the total number of populations from that continent.

Published
2018
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23. MOESM11 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Author

Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Minhui Chen, CrisĂ, Alessandra, Daly, Kevin, Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes, Rosen, Benjamin, Vajana, Elia, Catillo, Gennaro, StĂŠphane Joost, Nicolazzi, Ezequiel, Rochat, Estelle, Rothschild, Max, Servin, Bertrand, Sonstegard, Tad, Steri, Roberto, Tassell, Curtis, Ajmone-Marsan, Paolo, Crepaldi, Paola, and Stella, Alessandra

Abstract

Additional file 11: Figure S5. MDS plots of Dimensions 1 versus 2 (panel a) and 1 versus 3 (panel b). Each point represents a single individual. The correspondence between breeds and symbols is given in the legend box in upper right corner.

Published
2018
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24. MOESM3 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Author

Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Minhui Chen, CrisĂ, Alessandra, Daly, Kevin, Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes, Rosen, Benjamin, Vajana, Elia, Catillo, Gennaro, StĂŠphane Joost, Nicolazzi, Ezequiel, Rochat, Estelle, Rothschild, Max, Servin, Bertrand, Sonstegard, Tad, Steri, Roberto, Tassell, Curtis, Ajmone-Marsan, Paolo, Crepaldi, Paola, and Stella, Alessandra

Abstract

Additional file 3: Figure S1. Plot of FIS values. Red dots identify populations with statistically significant (Pâ

Published
2018
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25. MOESM10 of Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes

Author

Colli, Licia, Milanesi, Marco, Talenti, Andrea, Bertolini, Francesca, Minhui Chen, CrisĂ, Alessandra, Daly, Kevin, Corvo, Marcello, Guldbrandtsen, Bernt, Lenstra, Johannes, Rosen, Benjamin, Vajana, Elia, Catillo, Gennaro, StĂŠphane Joost, Nicolazzi, Ezequiel, Rochat, Estelle, Rothschild, Max, Servin, Bertrand, Sonstegard, Tad, Steri, Roberto, Tassell, Curtis, Ajmone-Marsan, Paolo, Crepaldi, Paola, and Stella, Alessandra

Abstract

Additional file 10: Figure S4. Cross-validation error and number of iterations. Description: Cross-validation (CV) error values (upper panel) and number of iterations required to reach convergence (lower panel) calculated for Admixture software runs for K values from 2 to 100. The arrow indicates the Kâ =â 85 value with the lowest CV score.

Published
2018
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