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4. Additional file 2 of Chlamydia pecorum detection in aborted and stillborn lambs from Western Australia

Author

Clune, Tom, Besier, Shane, Hair, Sam, Hancock, Serina, Lockwood, Amy, Thompson, Andrew, Jelocnik, Martina, and Jacobson, Caroline

Subjects
female genital diseases and pregnancy complications, reproductive and urinary physiology
Abstract

Additional file 2. Summary data for tissues available for laboratory diagnosis from aborted and stillborn lambs.

Published
2021
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8. Additional file 2: of Asymptomatic infections with highly polymorphic Chlamydia suis are ubiquitous in pigs

Author

Li, Min, Jelocnik, Martina, Yang, Feng, Jianseng Gong, Kaltenboeck, Bernhard, Polkinghorne, Adam, Zhixin Feng, Pannekoek, Yvonne, Borel, Nicole, Chunlian Song, Jiang, Ping, Li, Jing, Jilei Zhang, Yaoyao Wang, Jiawei Wang, Zhou, Xin, and Chengming Wang

Abstract

DualBrother recombination detection using the 489bp ompA fragment alignment of 26 Chinese C. suis strains. The top plot shows marginal posterior probabilities of the four most probable tree topologies, where break and change points of topologies are indicative of recombination. The last two plots show 95% Bayesian confidence interval (shaded in green) of the Kappa transition/transversion ratio, and average divergence Mu. (PDF 141 kb)

Published
2017
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9. Additional file 4: Table S4. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Author

Weina Guo, Jelocnik, Martina, Li, Jing, Sachse, Konrad, Polkinghorne, Adam, Pannekoek, Yvonne, Kaltenboeck, Bernhard, Jiansen Gong, Jinfeng You, and Chengming Wang

Abstract

PCR conditions for amplifying seven HK genes in this study. (DOCX 12Â kb)

Published
2017
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10. Additional file 8: Figure S1. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Author

Weina Guo, Jelocnik, Martina, Li, Jing, Sachse, Konrad, Polkinghorne, Adam, Pannekoek, Yvonne, Kaltenboeck, Bernhard, Jiansen Gong, Jinfeng You, and Chengming Wang

Subjects
education, behavior and behavior mechanisms, psychological phenomena and processes
Abstract

Graphical representation of the predicted transmembrane helices in the analyzed putative C. gallinacea inclusion (Inc) proteins from this study. (DOCX 423Â kb)

Published
2017
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11. Additional file 4: Table S4. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Author

Weina Guo, Jelocnik, Martina, Li, Jing, Sachse, Konrad, Polkinghorne, Adam, Pannekoek, Yvonne, Kaltenboeck, Bernhard, Jiansen Gong, Jinfeng You, and Chengming Wang

Abstract

PCR conditions for amplifying seven HK genes in this study. (DOCX 12Â kb)

Published
2017
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12. Additional file 4: of Asymptomatic infections with highly polymorphic Chlamydia suis are ubiquitous in pigs

Author

Li, Min, Jelocnik, Martina, Yang, Feng, Jianseng Gong, Kaltenboeck, Bernhard, Polkinghorne, Adam, Zhixin Feng, Pannekoek, Yvonne, Borel, Nicole, Chunlian Song, Jiang, Ping, Li, Jing, Jilei Zhang, Yaoyao Wang, Jiawei Wang, Zhou, Xin, and Chengming Wang

Abstract

DualBrother recombination detection using the concatenated 3,080 bp MLST alignment of all 40 C. suis strains used in this study. The top plot shows marginal posterior probabilities of the four most probable tree topologies, where break and change points of topologies are indicative of recombination. The last two plots show 95% Bayesian confidence interval (shaded in green) of the Kappa transition/transversion ratio, and average divergence Mu. (PDF 143 kb)

Published
2017
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13. Additional file 8: Figure S1. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Author

Weina Guo, Jelocnik, Martina, Li, Jing, Sachse, Konrad, Polkinghorne, Adam, Pannekoek, Yvonne, Kaltenboeck, Bernhard, Jiansen Gong, Jinfeng You, and Chengming Wang

Subjects
education, behavior and behavior mechanisms, psychological phenomena and processes
Abstract

Graphical representation of the predicted transmembrane helices in the analyzed putative C. gallinacea inclusion (Inc) proteins from this study. (DOCX 423Â kb)

Published
2017
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14. Additional file 3: Table S3. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Author

Weina Guo, Jelocnik, Martina, Li, Jing, Sachse, Konrad, Polkinghorne, Adam, Pannekoek, Yvonne, Kaltenboeck, Bernhard, Jiansen Gong, Jinfeng You, and Chengming Wang

Abstract

Primers used for MLST of C. gallinacea in this study. (DOCX 14Â kb)

Published
2017
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15. Additional file 2: Table S2. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Author

Weina Guo, Jelocnik, Martina, Li, Jing, Sachse, Konrad, Polkinghorne, Adam, Pannekoek, Yvonne, Kaltenboeck, Bernhard, Jiansen Gong, Jinfeng You, and Chengming Wang

Abstract

Primers used for generating C. gallinacea plasmid fragments in this study. (DOCX 14Â kb)

Published
2017
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16. Additional file 1: of Asymptomatic infections with highly polymorphic Chlamydia suis are ubiquitous in pigs

Author

Li, Min, Jelocnik, Martina, Yang, Feng, Jianseng Gong, Kaltenboeck, Bernhard, Polkinghorne, Adam, Zhixin Feng, Pannekoek, Yvonne, Borel, Nicole, Chunlian Song, Jiang, Ping, Li, Jing, Jilei Zhang, Yaoyao Wang, Jiawei Wang, Zhou, Xin, and Chengming Wang

Abstract

Mid-point rooted NJ phylogeny of ompA variable domains 1-2. A 489 bp region encompassing ompA VD1-2 sequences of 77 porcine C. suis strains identified in this study (in red font; name of strain, countries, sample type and accession number) are compared with 50 other C. suis sequences deposited in GenBank from six countries: Germany, Switzerland, Italy, USA, Japan and China (in black font). Branch lengths are measured in nucleotide substitutions and numbers show branching percentages in bootstrap replicates. Scale bar represents the percent sequence diversity. (PDF 376 kb)

Published
2017
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17. Additional file 3: of Asymptomatic infections with highly polymorphic Chlamydia suis are ubiquitous in pigs

Author

Li, Min, Jelocnik, Martina, Yang, Feng, Jianseng Gong, Kaltenboeck, Bernhard, Polkinghorne, Adam, Zhixin Feng, Pannekoek, Yvonne, Borel, Nicole, Chunlian Song, Jiang, Ping, Li, Jing, Jilei Zhang, Yaoyao Wang, Jiawei Wang, Zhou, Xin, and Chengming Wang

Abstract

DualBrother recombination detection using the 489bp ompA fragment alignment of all 40 C. suis strains used in this study. The top plot shows marginal posterior probabilities of the four most probable tree topologies, where break and change points of topologies are indicative of recombination. The last two plots show 95% Bayesian confidence interval (shaded in green) of the Kappa transition/transversion ratio, and average divergence Mu. (PDF 157 kb)

Published
2017
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18. Additional file 2: Table S2. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Author

Jelocnik, Martina, Bachmann, Nathan, Kaltenboeck, Bernhard, Waugh, Courtney, Woolford, Lucy, K. Speight, Gillett, Amber, Higgins, Damien, Cheyne Flanagan, Myers, Garry, Timms, Peter, and Polkinghorne, Adam

Abstract

Sequence analyses of the porcine L1, L17, and L71 C. pecorum pmp gene families. (PDF 357Â kb)

Published
2015
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19. Additional file 1: Table S1. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Author

Jelocnik, Martina, Bachmann, Nathan, Kaltenboeck, Bernhard, Waugh, Courtney, Woolford, Lucy, K. Speight, Gillett, Amber, Higgins, Damien, Cheyne Flanagan, Myers, Garry, Timms, Peter, and Polkinghorne, Adam

Abstract

C. pecorum L1 plasmid sequence identity comparisons based on discontiguous megaBLAST hits. (PDF 338Â kb)

Published
2015
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20. Additional file 4: Table S3. of Genetic diversity in the plasticity zone and the presence of the chlamydial plasmid differentiates Chlamydia pecorum strains from pigs, sheep, cattle, and koalas

Author

Jelocnik, Martina, Bachmann, Nathan, Kaltenboeck, Bernhard, Waugh, Courtney, Woolford, Lucy, K. Speight, Gillett, Amber, Higgins, Damien, Cheyne Flanagan, Myers, Garry, Timms, Peter, and Polkinghorne, Adam

Abstract

Characteristics of the polymorphic chromosomal genes under positive selection analysed in the present study from three porcine C. pecorum L1, L17, and L71 strains. (PDF 267Â kb)

Published
2015
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21. Additional file 1 of Real-time fluorometric and end-point colorimetric isothermal assays for detection of equine pathogens C. psittaci and equine herpes virus 1: validation, comparison and application at the point of care

Author

Jelocnik, Martina, Nyari, Sharon, Anstey, Susan, Playford, Nicole, Fraser, Tamieka A., Mitchell, Keith, Blishen, Anna, Pollak, Nina M., Carrick, Joan, Chicken, Catherine, and Jenkins, Cheryl

Subjects
3. Good health
Abstract

Additional file 1. Newly designed EHV-1 LAMP primers sequences utilized in this study. Primer sequences and their lengths are outlined in the table.

22. Additional file 1: Table S1. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

Author

Weina Guo, Jelocnik, Martina, Li, Jing, Sachse, Konrad, Polkinghorne, Adam, Pannekoek, Yvonne, Kaltenboeck, Bernhard, Jiansen Gong, Jinfeng You, and Chengming Wang

Subjects
mental disorders, bacteria, food and beverages, bacterial infections and mycoses, psychological phenomena and processes, 3. Good health
Abstract

C. gallinacea-positive samples used for MLST and plasmid detection. (DOCX 13Â kb)

23. Additional file 1 of Real-time fluorometric and end-point colorimetric isothermal assays for detection of equine pathogens C. psittaci and equine herpes virus 1: validation, comparison and application at the point of care

Author

Jelocnik, Martina, Nyari, Sharon, Anstey, Susan, Playford, Nicole, Fraser, Tamieka A., Mitchell, Keith, Blishen, Anna, Pollak, Nina M., Carrick, Joan, Chicken, Catherine, and Jenkins, Cheryl

Subjects
3. Good health
Abstract

Additional file 1. Newly designed EHV-1 LAMP primers sequences utilized in this study. Primer sequences and their lengths are outlined in the table.

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