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5 results on '"Erb-Downward, John R."'

1. Additional file 2 of Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing

Author

Wu, Nan, Ranjan, Piyush, Tao, Changyu, Liu, Chao, Yang, Ence, He, Bei, Erb-Downward, John R., Bo, Shining, Zheng, Jiajia, Guo, Chenxia, Liu, Beibei, Sun, Lina, Yan, Wei, Wang, Meng, Wang, Wenting, Wen, Jianing, Yang, Ping, Yang, Lin, Tian, Qiaoshan, Dickson, Robert P., and Shen, Ning

Subjects
Data_FILES
Abstract

Additional file 2: Results Comparation.

Published
2021
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3. Additional file 1 of Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing

Author

Wu, Nan, Ranjan, Piyush, Tao, Changyu, Liu, Chao, Yang, Ence, He, Bei, Erb-Downward, John R., Bo, Shining, Zheng, Jiajia, Guo, Chenxia, Liu, Beibei, Sun, Lina, Yan, Wei, Wang, Meng, Wang, Wenting, Wen, Jianing, Yang, Ping, Yang, Lin, Tian, Qiaoshan, Dickson, Robert P., and Shen, Ning

Abstract

Additional file 1: qRT-PCR gene targets and primer sequences.

Published
2021
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4. Additional file 1 of SquiggleNet: real-time, direct classification of nanopore signals

Author

Bao, Yuwei, Wadden, Jack, Erb-Downward, John R., Ranjan, Piyush, Zhou, Weichen, McDonald, Torrin L., Mills, Ryan E., Boyle, Alan P., Dickson, Robert P., Blaauw, David, and Welch, Joshua D.

Abstract

Additional file 1 Supplement. Details on data collection, model parameters, hyperparameter tuning, details on the efficiency comparison experiment method, details on the theoretical throughput estimation model are included in the Supplement. Additional experiment results, including DNA methylation, model interpretation, model performance trained on a different dataset, model performance on different test dataset composition ratio and on odd/even chromosomes, are also presented in the Supplement [24���28].

Published
2021
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5. Additional file 3 of Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing

Author

Wu, Nan, Ranjan, Piyush, Tao, Changyu, Liu, Chao, Yang, Ence, He, Bei, Erb-Downward, John R., Bo, Shining, Zheng, Jiajia, Guo, Chenxia, Liu, Beibei, Sun, Lina, Yan, Wei, Wang, Meng, Wang, Wenting, Wen, Jianing, Yang, Ping, Yang, Lin, Tian, Qiaoshan, Dickson, Robert P., and Shen, Ning

Abstract

Additional file 3: Comparation of PCR amplificated sequencing and non-PCR amplificated sequencing.

Published
2021
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