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Additional file 3: Table S2. Published ChIP-seq dataused in this study.

Additional file 4: Fig. S2. Representative snapshots ofIGV views of GTE4 enrichment on ribosome biogenesis related genes.

Additional file 13: Fig. S7. Uncropped pictures for Additional file 1_Fig S1. A Picture for Fig S1B. B Pictures for Fig S1C. Dash-lineboxes indicate samples presented in Fig S1C. C Pictures for Fig S1E.

Additional file 7: Fig. S3. RT-qPCR verifying theexpression of GTE4-bound and downregulated genes in gte4 under normal condition. Data are presented as mean±SEM of 2biological replicates.

Additional file 11: Fig. S6. Examples of conservedtranscription factor binding motifs identified in GTE4-enriched peaks.

Additional file 8: Fig. S4. JA-responsive genes areover-activated while growth pathways are impaired in gte4. (A) Biological repeat of RT-qPCR verification ofJA-responsive gene expression in gte4.(B, C) GO analysis of downregulated genes in gte4 under control (B) and PstDC3000 treatment (C) conditions.

Additional file 12: Table S6. Primers used in thisstudy.

Additional file 1: Fig. S1. Characterizations of gte4 mutant and GTE4-HA rescue plants. (A)Diagram of gte4 T-DNA insertionmutant. (B) Genotyping of gte4 T-DNAinsertion mutant. (C) RT-PCR verification of GTE4 transcripts in gte4T-DNA insertion mutant. MON1 servesas internal control. (D) Diagram of GTE4-HA construct for rescuing gte4 mutant. (E) Immunoblots of GTE4-HAprotein in GTE-HA rescue plants.

Additional file 10: Fig. S5. RT-qPCR verification ofcell cycle related gene expression in gte4.Data are presented as mean±SEM of 2 biological replicates.