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Quantitative structure-activity relationship (QSAR) analysis of the twenty-six perfluoroisopropyl-dinitrobenzene (PFIPDNB) derivatives was performed to explain their ability to suppress photochemical activity of the plants photosystem II using chloroplasts and subchloroplast thylakoid membranes enriched in photosystem II, called DT-20. Compounds were optimized by semi-empirical PM3 and DFT/B3LYP/6-31G methods. The Heuristic and the Best Multi-Linear Regression (BMLR) method in CODESSA were used to select the most appropriate molecular descriptors and to develop a linear QSAR model between experimental pI(50) values and the most significant set of the descriptors. The obtained models were validated by cross-validation (R(2)(cv)) and internal validation to confirm the stability and good predictive ability. The obtained eight models with five-parameter show that: (a) coefficient (R(2)) value of the chloroplast samples are slightly higher than that of the DT-20 samples both of Heuristic and BMLR models; (b) the coefficients of the BMLR models are slightly higher than that of Heuristic models both of chloroplasts and DT-20 samples; (c) The YZ shadow parameter and the indicator parameter, for presence of NO(2) substituent in the ring, are the most important descriptor at PM3-based and DFT-based QSAR models, respectively. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Artificial., (Copyright © 2012 Elsevier B.V. All rights reserved.)

Oxygen consumption in Mn-depleted photosystem II (PSII) preparations under continuous and pulsed illumination is investigated. It is shown that removal of manganese from the water-oxidizing complex (WOC) by high pH treatment leads to a 6-fold increase in the rate of O(2) photoconsumption. The use of exogenous electron acceptors and donors to PSII shows that in Mn-depleted PSII preparations along with the well-known effect of O(2) photoreduction on the acceptor side of PSII, there is light-induced O(2) consumption on the donor side of PSII (nearly 30% and 70%, respectively). It is suggested that the light-induced O(2) uptake on the donor side of PSII is related to interaction of O(2) with radicals produced by photooxidation of organic molecules. The study of flash-induced O(2) uptake finds that removal of Mn from the WOC leads to O(2) photoconsumption with maximum in the first flash, and its yield is comparable with the yield of O(2) evolution on the third flash measured in the PSII samples before Mn removal. The flash-induced O(2) uptake is drastically (by a factor of 1.8) activated by catalytic concentration (5-10microM, corresponding to 2-4 Mn per RC) of Mn(2+), while at higher concentrations (>100microM) Mn(2+) inhibits the O(2) photoconsumption (like other electron donors: ferrocyanide and diphenylcarbazide). Inhibitory pre-illumination of the Mn-depleted PSII preparations (resulting in the loss of electron donation from Mn(2+)) leads to both suppression of flash-induced O(2) uptake and disappearance of the Mn-induced activation of the O(2) photoconsumption. We assume that the light-induced O(2) uptake in Mn-depleted PSII preparations may reflect not only the negative processes leading to photoinhibition but also possible participation of O(2) or its reactive forms in the formation of the inorganic core of the WOC.

The hypothesis presented here for proton transfer away from the water oxidation complex of Photosystem II (PSII) is supported by biochemical experiments on the isolated PsbO protein in solution, theoretical analyses of better understood proton transfer systems like bacteriorhodopsin and cytochrome oxidase, and the recently published 3D structure of PS II (Pdb entry 1S5L). We propose that a cluster of conserved glutamic and aspartic acid residues in the PsbO protein acts as a buffering network providing efficient acceptors of protons derived from substrate water molecules. The charge delocalization of the cluster ensures readiness to promptly accept the protons liberated from substrate water. Therefore protons generated at the catalytic centre of PSII need not be released into the thylakoid lumen as generally thought. The cluster is the beginning of a localized, fast proton transfer conduit on the lumenal side of the thylakoid membrane. Proton-dependent conformational changes of PsbO may play a role in the regulation of both supply of substrate water to the water oxidizing complex and the resultant proton transfer.

A protective effect of bicarbonate (BC) against extraction of the extrinsic proteins, predominantly the Mn-stabilizing protein (PsbO protein), during treatment of Photosystem II (PS II) membrane fragment from pea with 2 M urea, and at low pH (using incubation in 0.2 M glycine-HCl buffer, pH 3.5 or 0.5 M citrate buffer, pH 4.0-4.5) was detected. It was shown that the extraction of the proteins with Mw 24 kDa (PsbP protein) and 18 kDa (PsbQ protein) by the use of highly concentrated solutions of NaCl does not depend on the presence of BC in the medium. An optimal concentration of BC at which it produces the maximum protecting effect was shown to be between 1 mM and 10 mM. The addition of formate did not influence the protein extraction but it reduced the stabilizing effect of BC. Independence of the stabilizing effect on the presence of the functionally active Mn within the water-oxidizing complex indicates that the protecting effect of BC is not related to its interaction with Mn ions. The fact that there is a preferable sensitivity of the PsbO protein to the absence of BC in the medium during all the treatments makes it possible to suggest that either BC interacts directly with the PsbO protein or it binds to some other sites within PS II and this binding facilitates the preservation of the native structure of this protein.

It is shown that the hydrazine-induced transition of the water-oxidizing complex (WOC) to super-reduced S-states depends on the presence of bicarbonate in the medium so that after a 20 min treatment of isolated spinach thylakoids with 3 mM NH(2)NH(2) at 20 degrees C in the CO(2)/HCO(3)(-)-depleted buffer the S-state populations are: 42% of S(-3), 42% of S(-2), 16% of S(-1) and even formal S(-4) state is reached, while in the presence of 2 mM NaHCO(3), the same treatment produces 30% of S(-3), 38% of S(-2), and 32% of S(-1) and there is no indication of the S(-4) state. Bicarbonate requirement for the oxygen-evolving activity, very low in untreated thylakoids, considerably increases upon the transition of the WOC to the super-reduced S-states, and the requirement becomes low again when the WOC returns back to the normal S-states using pre-illumination. The results are discussed as a possible indication of ligation of bicarbonate to manganese ions within the WOC.

The effects of the energization of cells by light and by exogenous glucose on the salt-induced inactivation of the photosynthetic machinery were investigated in the cyanobacterium Synechococcus sp. PCC 7942. The incubation of the cyanobacterial cells in a medium supplemented with 0.5 M NaCl induced a rapid decline with a subsequent slow decline, in the oxygen-evolving activity of Photosystem (PS) II and in the electron-transport activity of PSI. Light and exogenous glucose each protected PSII and PSI against the second phase of the NaCl-induced inactivation. The protective effects of light and glucose were eliminated by an uncoupler of phosphorylation and by lincomycin, an inhibitor of protein synthesis. Light and glucose had similar effects on the NaCl-induced inactivation of Na(+)/H(+) antiporters. After photosynthetic and Na(+)/H(+)-antiport activities had been eliminated by the exposure of cells to 0.5 M NaCl in the darkness, both activities were partially restored by light or exogenous glucose. This recovery was prevented by lincomycin. These observations suggest that cellular energization by either photosynthesis or respiration, which is necessary for protein synthesis, is important for the recovery of the photosynthetic machinery and Na(+)/H(+) antiporters from inactivation by a high level of NaCl.

The fluorescence properties of the isolated extrinsic 33 kDa subunit acting as 'manganese stabilizing protein' (MSP) of the water oxidizing complex in photosynthesis was analyzed in buffer solution. Measurements of the emission spectra as a function of excitation wavelength, pH and temperature led to the following results: (a) under all experimental conditions the spectra monitored were found to be the composite of two contributions referred to as '306 nm band' and 'long-wavelength band', (b) the excitation spectra of these two bands closely resemble those of tyrosine and tryptophan in solution, respectively, (c) the spectral shape of the '306 nm band' is virtually independent on pH but its amplitude drastically decreases in the alkaline with a pK of 11.7, (d) the amplitude of the 'long-wavelength' emission band at alkaline pH slightly increases when the pH rises from 7.2 to about 11.3 followed by a sharp decline at higher pH, and (e) the shape of the overall spectrum at pH 7.2 is only slightly changed upon heating to 90 degrees C whereas the amplitude significantly declines. Based on these findings the two distinct fluorescence bands are ascribed to tyrosine(s) ('306 nm band') and the only tryptophan residue W241 of MSP from higher plants ('long-wavelength band') as emitters which are both embedded into a rather hydrophobic environment.

It is well established that bicarbonate stimulates electron transfer between the primary and secondary electron acceptors, Q(A) and Q(B), in formate-inhibited photosystem II; the non-heme Fe between Q(A) and Q(B) plays an essential role in the bicarbonate binding. Strong evidence of a bicarbonate requirement for the water-oxidizing complex (WOC), both O2 evolving and assembling from apo-WOC and Mn2+, of photosystem II (PSII) preparations has been presented in a number of publications during the last 5 years. The following explanations for the involvement of bicarbonate in the events on the donor side of PSII are considered: (1) bicarbonate serves as an electron donor (alternative to water or as a way of involvement of water molecules in the oxidative reactions) to the Mn-containing O2 center; (2) bicarbonate facilitates reassembly of the WOC from apo-WOC and Mn2+ due to formation of the complexes MnHCO3+ and Mn(HCO3)2 leading to an easier oxidation of Mn2+ with PSII; (3) bicarbonate is an integral component of the WOC essential for its function and stability; it may be considered a direct ligand to the Mn cluster; (4) the WOC is stabilized by bicarbonate through its binding to other components of PSII.

The light excitation of P-960 results in the oxidation of P-960 and the reduction of P-800 (bacteriophytin b-800) in the reaction centers from Rhodopseudomonas viridis. A negative 847 nm band of the circular dichroism psectrum disappears under P-960 photooxidation, while a positive 827 nm band disappears under P-800 photoreduction. Exciton interaction of the pigment molecules in the reaction center is discussed.

Experimental evidence for electron transfer, photosensitized by bacteriochlorophyll, from cytochrome c to a pigment complex P-760 (involving bacteriopheophytin-760 and also bacteriochlorophyll-800) in the reaction centers of Chromatium minutissimum has been described. This photoreaction occurs between 77 and 293 degrees K at a redox potential of the medium between -250 and -530 mV. Photoreduction of P-760 is accompanied by development of a wide absorption band at 650 nm and of an EPR signal with g=2.0025+/-0.0005 and linewidth of 12.5+/-0.5 G, which are characteristic of the pigment radical anion. It is suggested that the photoreduction of P-760 occurs under the interaction of reduced cytochrome c with the reaction center state P+-890-P--760 which is induced by light. The existence of short-lived state P+-890-P--760 is indicated by the recombination luminescence with activation energy of 0.12 eV and t 1/2 less than or equal to 6 ns. This luminescence is exicted and emitted by bacteriochlorophyll and disappears when P-760 is reduced. At low redox potentials, the flash-induced absorbance changes related to the formation of the carotenoid triplet state with t 1/2 = 6 mus at 20 degreesC are observed. This state is not formed when P-760 is reduced at 293 and 160 degrees K. It is assumed that this state is formed from the reaction center state P+-890---760, which appears to be a primary product of light reaction in the bacterial reaction centers and which is probably identical with the state PF described in recent works.

Thermoluminescence of Photosystem II particles isolated from pea chloroplasts using digitonin and Triton X-100 was measured after 1 min illumination at a certain temperature (T(ex)) followed by illumination during cooling (40 Cdeg/min) to a lower temperature. Glow curves of the particles are characteristic of the photosynthetic oxygen-evolving material studied earlier. Complete (more than 95%) removal of Mn from the Photosystem II particles abolishes thermoluminescence bands around 0° C, related to the oxygen-evolving system, but the thermoluminescence bands peaking around -30°C (TL(-30)), -55°C (TL_ (-55)) and between-68 and -85° C, depending on Tex(TLv), remain unaltered. The bands are characterized by different dependence on T,x. The TL(-30), TL(-55) and TL v bands can also be observed in the glow curve of isolated pea and spinach chloroplasts. Re-addition of MnCI (2) (2 μM, corresponding to nearly 4 Mn atoms per reaction center of Photosystem II) to the Mn-depleted particles does not reactivate the thermoluminescence bands around 0° C. However, it does lead to suppression of TL(-30) accompanied by parallel activation of TL(-55), revealing competition of the TL (-30) and TL(-55) for charges generated by the reaction center. These data, as well as the results on the effect of inhibitors and electron donors to Photosystem II, show that positive charges contributing to the TL(-30), TL (-55) and TL v thermoluminescence bands are located on secondary electron donors of Photosystem II which do not require Mn and are located closer to the reaction center than the Mn-containing, water-oxidizing enzyme.

The role of Cl- in photosynthetic O2 evolution has been investigated by measurement of the steady-state O2 rate and EPR of the electron donors responsible for the S2 multiline signal and Signal IIs upon Cl- depletion and substitution in Photosystem II membranes. Cl- removal has three effects upon the donor side of Photosystem II. (1) It abolishes O2 evolution reversibly, while decreasing the yield of the S2 multiline signal indicative of the manganese site of the O2-evolving complex in the S2 oxidation state. This decrease is brought about by (2) the reversible disconnection of the manganese complex from the reaction center; and by (3) deactivation of S1 centers having reduced primary acceptor QA to form SO centers having a reduced Signal IIs species. Reactivation of O2 evolution by anions confirms earlier work showing a requirement for a univalent anion of optimum charge density. The observed order of reactivation is Cl- greater than Br- approximately NO3- much greater than OH- approximately F-. Reactivation of the S2 multiline signal follows Cl- approximately Br- greater than NO3- approximately OH- greater than F-, in near correspondence with reactivation of O2-evolution rates. Cl- titrations of F- -inhibited samples reveal two binding sites for Cl- which differ in binding affinity by 11-fold. The higher-affinity site reactivates the S1----S2 light reaction, while the lower-affinity site reactivates the S3----S0 light reaction. The high affinity site is located within the O2-evolving complex at an undetermined site, while the lower-affinity site functions in coupling the reaction center photochemistry to the O2-evolving complex. The results are compared with Cl-/F- exchange equilibria for Mn3+ in solution. A model for the lower S-state transitions is presented in which specific oxidation state assignments are made for some of the donors and acceptors of Photosystem II.