1. Integrated analysis of miRNAome and transcriptome reveals miRNA-mRNA network regulation in Vibrio alginolyticus infected thick shell mussel Mytilus coruscus
- Author
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Zhi Liao, Xiaojun Yan, Zhongtian Xu, Baoying Guo, Huai Yang, Pengzhi Qi, and Xiao-lin Zhang
- Subjects
0301 basic medicine ,Hemocytes ,Toll-Like Receptor Pathway ,Immunology ,Deep sequencing ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,microRNA ,Animals ,RNA, Messenger ,Molecular Biology ,Vibrio alginolyticus ,PI3K/AKT/mTOR pathway ,Mytilus ,biology ,Gene Expression Profiling ,biology.organism_classification ,Immunity, Innate ,Cell biology ,MicroRNAs ,TLR2 ,030104 developmental biology ,Gene Expression Regulation ,Vibrio Infections ,Mytilus coruscus ,Signal Transduction ,030215 immunology - Abstract
The thick shell mussel Mytilus coruscus has developed into a model species for studying the interaction between molluscs and environmental stimuli. Herein, integrated analysis of miRNAome and transcriptome was performed to reveal miRNA-mRNA network regulation in Vibrio alginolyticus infected M. coruscus. There have detected some histological abnormalities in digestive gland and gills of V. alginolyticus challenged mussels, ascertaining the effective irritation by the present bacterial strain. A total of 265 novel miRNAs were finally predicted, of which 26 were differentially expressed miRNAs (DEMs). Additionally, 667 differentially expressed genes (DEGs) were detected, which may be potentially associated with innate immune response to V. alginolyticus infection. A regulatory network linked to 22 important pathways and 16 DEMs and 34 OGs was constructed. Some traditional immune-related signaling pathways such as toll-like receptor signaling pathway (TLR) signaling pathway, transforming growth factor-beta (TGF-beta) signaling pathway, peroxisome, phagosome, lysosome, mammalian target of rapamyoin (mTOR) signaling pathway were linked to specific miRNAs and genes in this network. Further, interactional relationship between certain miRNAs and TLR pathway was dissected, which the results predicted that a number of TLRs and TLR-associated signaling genes including TLR1, TLR2, TLR4, TLR6, IRAK1, TRAF6, MAPK, and IL-17 were negatively regulated by novel_miR_11, novel_miR_145, novel_miR_196, novel_miR_5, novel_miR_163 and novel_miR_217 in the TLR pathway. Additionally, interactional relationship between novel_miR_145 and TLR2 was validated by laboratory experiment. The integrated analysis of mRNA and microRNA deep sequencing data exhibited a sophisticated miRNA-mRNA regulation network in M. coruscus in response to V. alginolyticus challenge, which shed a new light on the underlying mechanism of molluscan confronting bacterial infection.
- Published
- 2021
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