1. A plant-infecting subviral RNA associated with poleroviruses produces a subgenomic RNA which resists exonuclease XRN1 in vitro
- Author
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A.J. Campbell, Jeffrey Wilusz, and John R. Anderson
- Subjects
Exonuclease ,Untranslated region ,RNA, Untranslated ,Tombusvirus ,Coat-dependent RNA replicon ,Genetically Modified ,Subgenomic RNA ,Genome, Viral ,Medical and Health Sciences ,Virus ,Transformation ,Transformation, Genetic ,Genetic ,Virology ,Tobacco ,Genetics ,2.2 Factors relating to the physical environment ,Viral ,Subviral RNA ,Aetiology ,XRN1 ,3' Untranslated Regions ,Subgenomic mRNA ,RNA Cleavage ,Genome ,Agricultural and Veterinary Sciences ,Base Sequence ,biology ,Untranslated ,RNA ,Plants ,Biological Sciences ,Plants, Genetically Modified ,Non-coding RNA ,biology.organism_classification ,tlaRNA ,Cell biology ,Luteoviridae ,Agrobacterium tumefaciens ,Exoribonucleases ,Host-Pathogen Interactions ,Mutation ,biology.protein ,Nucleic acid ,RNA, Viral ,Infection - Abstract
Subviral agents are nucleic acids which lack the features for classification as a virus. Tombusvirus-like associated RNAs (tlaRNAs) are subviral positive-sense, single-stranded RNAs that replicate autonomously, yet depend on a coinfecting virus for encapsidation and transmission. TlaRNAs produce abundant subgenomic RNA (sgRNA) upon infection. Here, we investigate how the well-studied tlaRNA, ST9, produces sgRNA and its function. We found ST9 is a noncoding RNA, due to its lack of protein coding capacity. We used resistance assays with eukaryotic Exoribonuclease-1 (XRN1) to investigate sgRNA production via incomplete degradation of genomic RNA. The ST9 3' untranslated region stalled XRN1 very near the 5' sgRNA end. Thus, the XRN family of enzymes drives sgRNA accumulation in ST9-infected tissue by incomplete degradation of ST9 RNA. This work suggests tlaRNAs are not just parasites of viruses with compatible capsids, but also mutually beneficial partners that influence host cell RNA biology.
- Published
- 2022