1. Small molecule inhibitors of peptidoglycan synthesis targeting the lipid II precursor
- Author
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Martine Nguyen-Distèche, Nick K. Olrichs, Ana Maria Amoroso, Samo Turk, Jean-Marie Frère, Bernard Joris, Julieanne M. Bostock, Ian Chopra, Julien Offant, Katherine R. Mariner, Eefjan Breukink, Stanislav Gobec, Thierry Vernet, Adeline Derouaux, Mohammed Terrak, Astrid Zervosen, Service d'Hématologie, Université de Liège, Faculty of Pharmacy, University of Ljubljana, Department Biochemistry of Membranes, Utrecht University [Utrecht], Institut Mondor de Recherche Biomédicale (IMRB), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-IFR10, University of Leeds, Centre de Recherches du Cyclotron, and Institut National de la Santé et de la Recherche Médicale (INSERM)-IFR10-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)
- Subjects
Models, Molecular ,Penicillin binding proteins ,Penicillin-Binding Protein ,Stereochemistry ,Microbial Sensitivity Tests ,Peptidoglycan ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Glycosyltransferase ,medicine ,Enzyme Inhibitors ,030304 developmental biology ,Antibacterial agent ,Pharmacology ,0303 health sciences ,biology ,Lipid II ,030306 microbiology ,Active site ,Lipid Metabolism ,Small molecule ,Anti-Bacterial Agents ,Antibacterial ,chemistry ,Mechanism of action ,[SDV.SP.PHARMA]Life Sciences [q-bio]/Pharmaceutical sciences/Pharmacology ,Biocatalysis ,biology.protein ,Peptidoglycan Glycosyltransferase ,medicine.symptom - Abstract
International audience; Bacterial peptidoglycan glycosyltransferases (GTs) of family 51 catalyze the polymerization of the lipid II precursor into linear peptidoglycan strands. This activity is essential to bacteria and represents a validated target for the development of new antibacterials. Application of structure-based virtual screening to the National Cancer Institute library using eHits program and the structure of the glycosyltransferase domain of the penicillin-binding protein 2 resulted in the identification of two small molecules analogues 5, a 2-[1-[(2-chlorophenyl)methyl]-2-methyl-5-methylsulfanylindol-3-yl]ethanamine and 5b, a 2-[1-[(3,4-dichlorophenyl)methyl]-2-methyl-5-methylsulfanylindol-3-yl]ethanamine that exhibit antibacterial activity against several Gram-positive bacteria but were less active on Gram-negative bacteria. The two compounds inhibit the activity of five GTs in the micromolar range. Investigation of the mechanism of action shows that the compounds specifically target peptidoglycan synthesis. Unexpectedly, despite the fact that the compounds were predicted to bind to the GT active site, compound 5b was found to interact with the lipid II substrate via the pyrophosphate motif. In addition, this compound showed a negatively charged phospholipid-dependent membrane depolarization and disruption activity. These small molecules are promising leads for the development of more active and specific compounds to target the essential GT step in cell wall synthesis.
- Published
- 2011
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