12 results on '"Shai Dagan"'
Search Results
2. Dry Blood Spot sample collection for post-exposure monitoring of chemical warfare agents – In vivo determination of phosphonic acids using LC-MS/MS
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Adi Neufeld Cohen, Shai Dagan, Lilach Yishai Aviram, Miriam Magen, Shlomi Lazar, and Shira Chapman
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Male ,Sarin ,Phosphorous Acids ,Metabolite ,Clinical Biochemistry ,Cyclosarin ,01 natural sciences ,Biochemistry ,Analytical Chemistry ,Rats, Sprague-Dawley ,chemistry.chemical_compound ,Limit of Detection ,Tandem Mass Spectrometry ,Liquid chromatography–mass spectrometry ,Soman ,Animals ,Humans ,Chemical Warfare Agents ,Whole blood ,Chromatography ,010405 organic chemistry ,010401 analytical chemistry ,Reproducibility of Results ,Environmental Exposure ,Cell Biology ,General Medicine ,Rats ,0104 chemical sciences ,chemistry ,Linear Models ,Dried Blood Spot Testing ,Sample collection ,Chromatography, Liquid ,Blood drawing - Abstract
Phosphonic acids are the direct and immediate metabolites of organophosphorus chemical warfare agents (OP-CWAs). Accordingly, their detection serves for evaluating exposure to OP-CWAs in a terror or war scenario. After exposure, phosphonic acids are present in the blood; however, blood drawing must be carried out by medical personnel, hence the number of samples that can be drawn in a mass-casualty event is limited. Herein, we describe a new approach developed for the determination of phosphonic acids in blood using Dry Blood Spots (DBSs) on a filter paper. The method is based on a simple sample preparation protocol, followed by LC-MS-MS targeted (MRM) analysis. The detection limits of Soman (GD), Cyclosarin (GF) and VX metabolites in whole blood were as low as 1 ng/ml, while the detection limits were 0.3 ng/ml for the GF metabolite and 0.5 ng/ml for the Sarin (GB) metabolite. Good recoveries were obtained in the range of 1–100 ng/ml for GB and GD metabolites, and 3–100 ng/ml for GF, VX and RVX metabolites, with a linear response (R2 = 0.99). The method has proven to be reliable even with DBS samples stored up to 35 days at room temperature before analysis. This method was implemented in a 24 h time-course determination of the Sarin metabolite in an in - vivo experiment, after rat exposure to 1 LD50 of Sarin. This technique is simple, rapid, sensitive, robust, long lasting and compatible with field collection and storage; hence, it can serve for large-scale sampling and reliable monitoring of potential OP-CWAs casualties. Since DBS sampling is amenable to nonprofessionals, including self-sampling, this technique is highly suitable for mass-casualty incidents.
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- 2018
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3. Unraveling mosquito metabolism with mass spectrometry-based metabolomics
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Thomas D. Horvath, Patricia Y. Scaraffia, and Shai Dagan
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fungi ,Computational biology ,Biology ,Mass spectrometry ,Mass Spectrometry ,Article ,Culicidae ,Infectious Diseases ,Metabolomics ,Parasitology ,parasitic diseases ,Metabolome ,Animals - Abstract
Nearly half a million people die annually due to mosquito-borne diseases. Despite aggressive mosquito population-control efforts, current strategies are limited in their ability to control these vectors. A better understanding of mosquito metabolism through modern approaches can contribute to the discovery of novel metabolic targets and/or regulators and lead to the development of better mosquito-control strategies. Currently, cutting-edge technologies such as gas or liquid chromatography-mass spectrometry-based metabolomics are considered 'mature technologies' in many life-science disciplines but are still an emerging area of research in medical entomology. This review primarily discusses recent developments and progress in the application of mass spectrometry-based metabolomics to answer multiple biological questions related to mosquito metabolism.
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- 2021
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4. Selective screening for 'unknown' phosphorous-containing compounds using high-resolution accurate-mass LC-MS
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Shai Dagan and Eyal Drug
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Chromatography ,Chemistry ,Phosphorus ,010401 analytical chemistry ,Analytical technique ,chemistry.chemical_element ,010402 general chemistry ,Condensed Matter Physics ,Phosphate ,01 natural sciences ,Phosphonate ,Chemical formula ,0104 chemical sciences ,Ion ,chemistry.chemical_compound ,Liquid chromatography–mass spectrometry ,Degradation (geology) ,Physical and Theoretical Chemistry ,Instrumentation ,Spectroscopy - Abstract
An analytical technique was developed for the detection of phosphorus-containing compounds, using high-resolution-accurate-mass (HRAM) LC-MS. This method was constructed as a “flagging” approach for chromatographic peaks of compounds suspected of containing phosphorus, using high-energy in-source CID fragmentation, in parallel with a Full-MS experiment. Selective peak picking is achieved by tracking the highly resolved low m/z product ions of phosphorus-containing products, indicative of several phosphate and phosphonate groups. The chemical formula is then specifically assigned by a simultaneous accurate mass measurement of the precursor ion, together with the confirmed presence of a phosphorus atom in the suspect peak. This new method is demonstrated with various phosphorus-containing compounds such as V-class chemical warfare agents, nerve agents’ degradation products, pesticides, organic phosphates and a phospholipid. For these compounds, the developed method was found to be effective at concentrations as low as 1 ng/mL, in environmental extracts of soil and in urine (in the case of the phospholipid), making it comparable to selective phosphorus detectors such as GC-FPD, but with a much broader scope for charged, polar, or larger compounds.
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- 2021
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5. Determination of organophosphorus acids by liquid chromatography positive electrospray ionization tandem mass spectrometry after chemical derivatization
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Moran Madmon, Shai Dagan, and Avi Weissberg
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chemistry.chemical_classification ,Analyte ,Chromatography ,Electrospray ionization ,010401 analytical chemistry ,Ion suppression in liquid chromatography–mass spectrometry ,010402 general chemistry ,Condensed Matter Physics ,Tandem mass spectrometry ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Pyridine ,Organic chemistry ,Amine gas treating ,Physical and Theoretical Chemistry ,Derivatization ,Instrumentation ,Spectroscopy ,Alkyl - Abstract
Negative electrospray ionization tandem mass spectrometry (ESI-MS/MS) is the first choice for detecting and identifying organophosphorus acids such as alkyl methylphosphonic acids, dialkyl phosphates and dialkyl thiophosphates. However, chemical noise in the lower mass regions, ion suppression and poor chromatographic retention of small, highly polar acids render the identification of such acids difficult, especially in complex matrices. To address this difficulty, we evaluated charge- reversal derivatizations of several polar organophosphorus acids with eight commercially- available, mostly pyridine-based reagents, possessing high proton-affinity amines. A simple and generic derivatization procedure of such acids in the presence of potassium carbonate and 18-crown-6 in acetonitrile was developed. After derivatization, the samples were analysed by LC-ESI(+)-MS/MS, and a fragmentation study was carried out. For all derivatizing agents, the resulting acid-derivatives were highly retained by LC and well responded in the ESIMS/MS in the positive-ion mode. However, for several reagents, structural information losses were observed in MS/MS. Interestingly, each derivatizing agent exhibited a different MS/MS behaviour towards the analytes. Some derivatizing agents underwent considerable collision-induced dissociation exclusively at the amine tag portion, while others dissociated at the analyte portion and at the amine portion, depending on the alkyl side chain linked to the oxygen. Only the 3- (bromoacetyl)pyridine derivatives were highly specific and provided rich informative MS/MS spectra. The MS/MS identifications were based on characteristic neutral losses, diagnostic ions for the organophosphorus skeleton, and amine tag-characteristic product ions. This derivatization is beneficial in the identification of target and unknown organophosphorus acids.
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- 2016
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6. Instantaneous monitoring of free sarin in whole blood by dry blood spot–thermal desorption–GC–FPD/MS analysis
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Shira Chapman, Shlomi Lazar, Dan Loewenthal, Shai Dagan, Sigalit Gura, Relli Adani, Lilach Yishai-Aviram, Dana Marder, and Avi Weissberg
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Male ,Sarin ,Vinyl Compounds ,Clinical Biochemistry ,Thermal desorption ,030226 pharmacology & pharmacy ,01 natural sciences ,Biochemistry ,Gas Chromatography-Mass Spectrometry ,Analytical Chemistry ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Limit of Detection ,Animals ,Sample preparation ,Styrene ,Analysis method ,Whole blood ,Mice, Inbred ICR ,Chromatography ,Dynamic range ,010401 analytical chemistry ,Ms analysis ,Reproducibility of Results ,Cell Biology ,General Medicine ,0104 chemical sciences ,chemistry ,Linear Models ,Adsorption ,Dried Blood Spot Testing - Abstract
Dry blood spot (DBS), a micro whole-blood sampling technique, enables rapid and self-blood collection; it is stable and economical. Currently, DBS filters require various sample preparation procedures specifically tailored for the target compounds, which are followed by GC–MS or LC–MS analysis. However, the small amounts of blood make the approach analytically challenging, mostly in terms of sensitivity and quantification. Herein, we introduce a new DBS concept for GC-compatible volatile to semi-volatile compounds in which DBS is directly coupled with thermal desorption analysis, thus eliminating time consuming treatments. Furthermore, to stabilize the target compound over the sampling DBS substrate, a commercial filter based on an extremely efficient trapping adsorption phase, styrene–divinylbenzene (SDVB), is first used. The performance of the new SDVB–DBS concept was demonstrated herein for monitoring the most volatile chemical warfare agent, sarin, which might be present in blood and the detection of which is usually challenging due to its rapid metabolism. This study encompasses adequate sampling and analysis method parametrization and validation, leading to a detection sensitivity of 100 pg sarin per 30 µL whole blood in 5-day-old samples, with a linear dynamic range of two orders of magnitude, adequate precision, and acceptable accuracy. Applying the method to an in-vivo mouse intranasal exposure experiment (3LD50 GB) enabled the successful detection of 25–90 ng mL−1 free sarin in blood samples drawn 2 min after exposure. The method’s performance clearly emphasizes the potential of the new concept in “freezing the clock” for reactive whole blood media in pharmacokinetics and pharmacodynamics studies, as well as in applications in which informative and reliable monitoring of unstable target compounds and biomarkers is desired.
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- 2020
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7. Interpretation of ESI(+)-MS-MS spectra—Towards the identification of 'unknowns'
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Shai Dagan and Avi Weissberg
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Chemistry ,Electrospray ionization ,Two step ,Analytical chemistry ,Protonation ,Condensed Matter Physics ,Dissociation (chemistry) ,Spectral line ,Fragmentation (mass spectrometry) ,Computational chemistry ,Molecule ,Physical and Theoretical Chemistry ,Instrumentation ,Spectroscopy - Abstract
We report a systematic empirical investigation of ESI(+)-MS-MS dissociation pathways of over 1000 spectra of small organic compounds, containing more than 30 chemical functional groups. The dissociation processes of the protonated molecular ions were explored and interpretated. We derived typical basic fragmentation channels for individual functional groups and established a unified set of fragmentation rules. Multiple bond cleavages of molecules containing single and multiple functional groups were explored as well and the corresponding fragmentation rules were derived. Applying these rules enabled to match between proposed chemical structures and an ESI(+)-MS-MS spectrum of an “unknown”. Comparison to EI fragmentation routes was also carried out. Despite the general dissimilarity between ESI(+)-MS-MS and EI-MS spectra, we exploit the minor similarities between the spectra, and utilizing NIST-EI database and search option, can be successfully reduced the number of proposed structures. The two step methodology developed here is demonstrated and evaluated in the identification of various “unknowns”.
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- 2011
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8. Internal energy deposition with silicon nanoparticle-assisted laser desorption/ionization (SPALDI) mass spectrometry
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Dylan J. Boday, Árpád Somogyi, Vicki H. Wysocki, Yimin Hua, Shai Dagan, and Ronald J. Wysocki
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Silanes ,Matrix-assisted laser desorption electrospray ionization ,Internal energy ,Silicon ,education ,Analytical chemistry ,chemistry.chemical_element ,Condensed Matter Physics ,Mass spectrometry ,Soft laser desorption ,chemistry.chemical_compound ,chemistry ,Ionization ,Desorption ,Physical and Theoretical Chemistry ,Instrumentation ,Spectroscopy - Abstract
The use of silicon nanoparticles for laser desorption/ionization (LDI) is a new appealing matrix-less approach for the selective and sensitive mass spectrometry of small molecules in MALDI instruments. Chemically modified silicon nanoparticles (30 nm) were previously found to require very low laser fluence in order to induce efficient LDI, which raised the question of internal energy deposition processes in that system. Here we report a comparative study of internal energy deposition from silicon nanoparticles to previously explored benzylpyridinium (BP) model compounds during LDI experiments. The internal energy deposition in silicon nanoparticle-assisted laser desorption/ionization (SPALDI) with different fluorinated linear chain modifiers (decyl, hexyl and propyl) was compared to LDI from untreated silicon nanoparticles and from the organic matrix, α-cyano-4-hydroxycinnamic acid (CHCA). The energy deposition to internal vibrational modes was evaluated by molecular ion survival curves and indicated that the ions produced by SPALDI have an internal energy threshold of 2.8–3.7 eV. This is slightly lower than the internal energy induced using the organic CHCA matrix, with similar molecular survival curves as previously reported for LDI off silicon nanowires. However, the internal energy associated with desorption/ionization from the silicon nanoparticles is significantly lower than that reported for desorption/ionization on silicon (DIOS). The measured survival yields in SPALDI gradually decrease with increasing laser fluence, contrary to reported results for silicon nanowires. The effect of modification of the silicon particle surface with semifluorinated linear chain silanes, including fluorinated decyl (C10), fluorinated hexyl (C6) and fluorinated propyl (C3) was explored too. The internal energy deposited increased with a decrease in the length of the modifier alkyl chain. Unmodified silicon particles exhibited the highest analyte internal energy deposition. These findings may suggest a role of the modifier as a moderator in the energy dissipation and relaxation process. The relatively low internal energy content of SPALDI-produced ions indicates that this is a “soft” desorption technique, with potential advantages in the analysis of labile compounds.
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- 2009
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9. Comparison of gas chromatography–pulsed flame photometric detection–mass spectrometry, automated mass spectral deconvolution and identification system and gas chromatography–tandem mass spectrometry as tools for trace level detection and identification
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Shai Dagan
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Detection limit ,Analyte ,Chromatography ,Gas Chromatography/Tandem Mass Spectrometry ,Chemistry ,Elution ,Organic Chemistry ,Pesticide Residues ,Analytical chemistry ,General Medicine ,Mass spectrometry ,Sensitivity and Specificity ,Biochemistry ,Gas Chromatography-Mass Spectrometry ,Analytical Chemistry ,Matrix (chemical analysis) ,Automation ,Soil ,Gas chromatography ,Gas chromatography–mass spectrometry - Abstract
The complexity of a matrix is in many cases the major limiting factor in the detection and identification of trace level analytes. In this work, the ability to detect and identify trace level of pesticides in complex matrices was studied and compared in three, relatively new methods: (a) GC–PFPD–MS where simultaneous PFPD (pulsed flame photometric detection) and MS analysis is performed. The PFPD indicates the exact chromatographic time of suspected peaks for their MS identification and provides elemental information; (b) automatic GC–MS data analysis using the AMDIS (“Automated Mass Spectral Deconvolution and Identification System”) software by the National Institute of Standards and Technology; (c) GC–MS–MS analysis. A pesticide mixture (MX-5), containing diazinon, methyl parathion, ethyl parathion, methyl trithion and ethion was spiked, in descending levels from 1 ppm to 10 ppb, into soil and sage (spice) extracts and the detection level and identification quality were evaluated in each experiment. PFPD–MS and AMDIS exhibited similar performance, both superior to standard GC–MS, revealing and identifying compounds that did not exhibit an observable GC peak (either buried under the chromatographic background baseline or co-eluting with other interfering GC peaks). GC–MS–MS featured improved detection limits (lower by a factor of 6–8) compared to AMDIS and PFPD–MS. The GC–PFPD–MS–MS combination was found useful in several cases, where no reconstructed ion chromatogram MS–MS peaks existed, but an MS–MS spectrum could still be extracted at the elution time indicated by PFPD. The level of identification and confirmation with MS–MS was inferior to that of the other two techniques. In comparison with the soil matrix, detection limits obtained with the loaded sage matrix were poorer by similar factors for all the techniques studied (factors of 5.8, >6.5 and 4.0 for AMDIS, PFPD–MS and MS–MS, respectively). Based on the above results, the paper discusses the trade-offs between detectivity and identification level with the compared three techniques as well as other more traditional techniques and approaches.
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- 2000
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10. Surface ionization mass spectrometry of drugs in the thermal and hyperthermal energy range — a comparative study
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Toshihiro Fujü, Aviv Amirav, and Shai Dagan
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Secondary ion mass spectrometry ,Chemical ionization ,Chemistry ,Ionization ,Physics::Atomic and Molecular Clusters ,Analytical chemistry ,Physics::Accelerator Physics ,Thermal ionization ,Mass spectrometry ,Spectroscopy ,Ion source ,Electron ionization ,Atmospheric-pressure laser ionization - Abstract
Thermal and hyperthermal surface ionization (SI) mass spectra of nicotine, caffeine and lidocaine were obtained using a rhenium oxide surface. Thermal surface ionization was studied on an oxidized surface positioned inside an electron impact ion source, while hyperthermal surface ionization (HSI) was obtained upon seeding the compounds into a hydrogen or helium supersonic molecular beam that scattered from the rhenium oxide surface. Both HSI and SI provide rich, informative and complementary mass spectral information. The results indicate that SI follows thermal dissociation processes on the surface prior to the desorption of the ion, while in HSI no thermal equilibrium is established and the ionization process is impulsive, followed by mostly unimolecular ion dissociation. HSI mass spectra are similar to electron impact mass spectra in the fragment ion masses, but the observed relative intensities are different. HSI is a softer ionization method compared to SI, and enables the degree of ion fragmentation to be tuned so that it can be minimized to a low level at low molecular kinetic energy. In SI, limited control over the degree of fragmentation is possible through the surface temperature. The analytical mass spectrometric applications of SI and HSI are briefly mentioned.
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- 1995
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11. Fast, high temperature and thermolabile GC—MS in supersonic molecular beams
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Aviv Amirav and Shai Dagan
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chemistry.chemical_compound ,Chromatography ,chemistry ,Elution ,Analytical chemistry ,Thermal ionization ,Supersonic speed ,Decane ,Gas chromatography ,Mass spectrometry ,Molecular beam ,Spectroscopy ,Electron ionization - Abstract
This work describes and evaluates the coupling of a fast gas chromatograph (GC) based on a short column and high carrier gas flow rate to a supersonic molecular beam mass spectrometer (MS). A 50 cm long megabore column serves for fast GC separation and connects the injector to the supersonic nozzle source. Sampling is achieved with a conventional syringe based splitless sample injection. The injector contains no septum and is open to the atmosphere. The linear velocity of the carrier gas is controlled by a by-pass (make-up) gas flow introduced after the column and prior to the supersonic nozzle. The supersonic expansion serves as a jet separator and the skimmed supersonic molecular beam (SMB) is highly enriched with the heavier organic molecules. The supersonic molecular beam constituents are ionized either by electron impact (EI) or hyperthermal surface ionization (HSI) and mass analyzed. A 1 s fast GC—MS of four aromatic molecules in methanol is demonstrated and some fundamental aspects of fast GC—MS with time limit constraints are outlined. The flow control (programming) of the speed of analysis is shown and the analysis of thermolabile and relatively non-volatile molecules is demonstrated and discussed. The tail-free, fast GC—MS of several mixtures is shown and peak tailing of caffeine is compared with that of conventional GC—MS. The improvement of the peak shapes with the SMB—MS is analyzed with the respect to the elimination of thermal vacuum chamber background. The extrapolated minimum detected amount was about 400 ag of anthracence- d 10 , with an elution time which was shorter than 2s. Repetitive injections could be performed within less than 10 s. The fast GC—MS in SMB seems to be ideal for fast target compound analysis even in real world, complex mixtures. The few seconds GC—MS separation and quantification of lead (as tetraethyllead) in gasoline, caffeine in coffee, and codeine in a drug is demonstrated. Controlled HSI selectivity is demonstrated in the range of 10 1 to 10 4 anthracene/decane which helped to simplify the selective analysis of aromatic molecules in gasoline. The contribution of SMB to the operation of the fast GC—MS is summarized and the compatibility with conventional GC having a megabore column is shown. Splitless injections of 100 μL sample solutions for trace level concentration detection is also presented (with a conventional GC).
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- 1994
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12. Collisionally-activated dissociation in hyperthermal surface ionization of cholesterol
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Aviv Amirav, Albert Danon, and Shai Dagan
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Chemical ionization ,Collision-induced dissociation ,Chemistry ,Thermal ionization ,Photochemistry ,Mass spectrometry ,Dissociation (chemistry) ,Ion ,Fragmentation (mass spectrometry) ,Ionization ,Physics::Atomic and Molecular Clusters ,Physics::Chemical Physics ,Atomic physics ,Spectroscopy - Abstract
Cholesterol in a hydrogen-seeded supersonic molecular beam was scattered from a continuously oxidized rhenium foil. The hyperthermal surface scattering exhibited efficient molecular ionization with a controlled amount of molecular ion dissociation. At 5.3 eV incident molecular kinetic energy the hyperthermal surface ionization mass spectrum was dominated by the parent molecular ion. Upon the increase of the molecular kinetic energy, a gradual increase in the degree of ion dissociation was observed. At 22eV incident kinetic energy the parent ion was completely dissociated and the mass spectrum was dominated by an extensive consecutive fragmentation. An efficient kinetic-vibrational energy transfer was observed, and it is extimated to be over 18% of the available incident kinetic energy. The implication for surface collisionally-activated dissociation of polyatomic ions is discussed. Rhenium oxide is suggested as an optimal surface for this purpose, as well as for the hyperthermal surface ionization of neutral species.
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- 1992
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