1. Triplexed Affinity Reagents to Sample the Mammalian Inositol Pyrophosphate Interactome
- Author
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David Furkert, Michal Nadler-Holly, Dorothea Fiedler, and Sarah Hostachy
- Subjects
Proteome ,Inositol Phosphates ,Clinical Biochemistry ,Protein domain ,GTPase ,Biology ,Proteomics ,01 natural sciences ,Biochemistry ,Pyrophosphate ,Interactome ,GTP Phosphohydrolases ,chemistry.chemical_compound ,Protein Domains ,Tandem Mass Spectrometry ,Drug Discovery ,Humans ,Inositol ,Molecular Biology ,Chromatography, High Pressure Liquid ,Pharmacology ,010405 organic chemistry ,Affinity Labels ,HCT116 Cells ,Phosphoric Monoester Hydrolases ,0104 chemical sciences ,HEK293 Cells ,chemistry ,Molecular Medicine ,Phosphorylation ,Signal transduction ,Protein Kinases ,Protein Binding ,Signal Transduction - Abstract
The inositol pyrophosphates (PP-InsPs) are a ubiquitous group of highly phosphorylated eukaryotic messengers. They have been linked to a panoply of central cellular processes, but a detailed understanding of the discrete signaling events is lacking in most cases. To create a more mechanistic picture of PP-InsP signaling, we sought to annotate the mammalian interactome of the most abundant inositol pyrophosphate 5PP-InsP5. To do so, triplexed affinity reagents were developed, in which a metabolically stable PP-InsP analog was immobilized in three different ways. Application of these triplexed reagents to mammalian lysates identified between 300 and 400 putative interacting proteins. These interactomes revealed connections between 5PP-InsP5 and central cellular regulators, such as lipid phosphatases, protein kinases, and GTPases, and identified protein domains commonly targeted by 5PP-InsP5. Both the triplexed affinity reagents, and the proteomic datasets, constitute powerful resources for the community, to launch future investigations into the multiple signaling modalities of inositol pyrophosphates.
- Published
- 2020
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