1. Taxonomic profiling of Symbiodiniaceae and bacterial communities associated with Indo-Pacific corals in the Gulf of Thailand using PacBio sequencing of full-length ITS and 16S rRNA genes
- Author
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Sithichoke Tangphatsornruang, Sonicha U-thoomporn, Wasitthee Kongkachana, Makamas Sutthacheep, Wirulda Pootakham, Wuttichai Mhuantong, Thammasak Yeemin, Chutima Sonthirod, Chaiwat Naktang, Nukoon Jomchai, Duangjai Sangsrakru, Thippawan Yoocha, and Sittiporn Pengsakun
- Subjects
0106 biological sciences ,Coral ,Zoology ,01 natural sciences ,03 medical and health sciences ,RNA, Ribosomal, 16S ,Gammaproteobacteria ,Genetics ,Animals ,natural sciences ,Internal transcribed spacer ,030304 developmental biology ,0303 health sciences ,Bacteria ,biology ,fungi ,technology, industry, and agriculture ,Alphaproteobacteria ,Dinoflagellate ,Genes, rRNA ,biochemical phenomena, metabolism, and nutrition ,Anthozoa ,Thailand ,biology.organism_classification ,Holobiont ,Dinoflagellida ,Pocillopora ,geographic locations ,Indo-Pacific ,010606 plant biology & botany - Abstract
Corals live with complex assemblages of microbes including bacteria, the dinoflagellate Symbiodiniaceae, fungi and viruses in a coral holobiont. These coral-associated microorganisms play an important role in their host fitness and survival. Here, we investigated the structure and diversity of algal and bacterial communities associated with five Indo-Pacific coral species, using full-length 16S rRNA and internal transcribed spacer sequences. While the dinoflagellate communities associated with Poriteslutea were dominated with Symbiodiniaceae genus Cladocopium, the other four coral hosts were associated mainly with members of the Durusdinium genus, suggesting that host species was one of the underlying factors influencing the structure and composition of dinoflagellate communities associated with corals in the Gulf of Thailand. Alphaproteobacteria dominated the microbiomes of Pocillopora spp. while Pavonafrondifera and P. lutea were associated primarily with Gammaproteobacteria. Finally, we demonstrated a superior performance of full-length 16S rRNA sequences in achieving species-resolution taxonomic classification of coral-associated microbiota.
- Published
- 2021