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Climate change impacts on the fisheries can be short-term or long-term, making them highly vulnerable. Fishers' vulnerability encompasses several factors and includes, among others, their sensitivity, exposure to the elements, and their adaptive capacity. The main aim of this study was to help develop a vulnerability assessment tool that can be applied in the various nodes of the fisheries and aquaculture value chains with a long-term view of enhancing the resilience of the fisheries and helping increase the adaptive capacity of the fishing communities. A participatory technique using online workshops was conducted together with various stakeholders (N = 214) who gave insights and suggested indicators that drive climate change impacts and vulnerability. Based on the online workshops conducted, the common hazards/drivers were increasing temperature, typhoons, flooding (sea-level rise), and the recent pandemic, which consequently destroy coral reef ecosystems, affect fisheries yield, increases fish mortality, damage boats, fishing gears, pens, cages, pond dikes, erode beach properties, and devastate houses. In association with these impacts, mobility, travel, processing, and logistic operations are severely reduced. In the human dimension, the fishers and fish farmers are directly affected in terms of income loss, destroyed fishing gears, nutritional deficiencies and health impacts, less fishing operations, early or reduced harvest yield, and low market value of products. In the adaptation options, the infrastructure, social, economic, awareness/knowledge, and relevant governance/policy dimensions are needed to address and help mitigate various climate change impacts.

Understanding the extinction risk of taxonomic groups increases our ability to prioritize efforts to address biodiversity loss. Over 400 species of herrings, shads, sardines, anchovies, menhadens, and relatives belong to the Order Clupeiformes and include many of the most important forage fishes. These small, schooling fishes are ecologically, economically, and culturally significant. However, despite their global contribution to fisheries and our increasing reliance on them for food and modern commodities, we lack critical information regarding basic biology and population trends for most species. We applied the IUCN Red List methodology, a comprehensive and systematic approach to assess extinction risk, to all clupeiform species. The best estimate suggests nearly 11% of species are of elevated conservation concern, although this could be as high as 36%. Two regions, the Caribbean and the Indo-Malay-Philippine Archipelago have high concentrations of threatened and Data Deficient species and are areas of conservation concern. Major threats include overexploitation, pollution, and habitat modification. Immediate conservation priorities include: 1) increasing research and mitigative action directed toward species assessed as threatened or Data Deficient; 2) improving fisheries management regulations for the understudied but heavily exploited species, and 3) promoting local, intensive habitat restoration to reduce pollution and remove dams. These extinction risk assessments and subsequent analyses should be used as an informative tool for fisheries and conservation managers and to monitor conservation progress.

Degradation of the fishery resources in the SCS has been frequently reported, and calls for international cooperation through establishing an international or multilateral fisheries management organization were frequently made in recent years. However, little progress has been observed in this regard and most resources in the region are not subject to any regional cooperative management, mainly due to the disputes of sovereign rights on the SCS. In order to bypass such disputes and take a practical step forward towards reaching the goal of joint management for the SCS fisheries, a ‘bottom-up approach’ was undertaken through holding a “SCS Fisheries Resources and Management Workshop” in 2017 which is a non-political, depoliticized and non-State driven forum with key SCS fishing actors providing and exchanging substantive information on their individual fisheries for building up mutual understanding and confidence as the first step for further collaboration on the management of SCS fisheries resources. Based on information from the Workshop and substantial joint works afterwards, for the first time, this study have successfully compiled and presented basic information on (1) the fisheries statistics from key fishing actors of the region, (2) the management measures implemented by each fishing actor, and (3) subjective evaluations from managers/scientists of the key fishing actors through a questionnaire study on the causes of the stock depletion and/or the key issues that should be addressed for any potential stock recovery. Several statistical issues have been identified, and a further review of the existing statistical systems of the participating parties was recommended as an important topic for future meetings. Communication and mutual understanding of the management measures designed for and implemented in the region are considered crucial for the future construction of any regional collaborative management scheme. High priority issues that were emphasized by the respondents of the questionnaire study include insufficient control on fishing capacity and fishing efforts as well as weak law enforcement; which may relate to the issues of insufficient enforcement resources, low policy priority and institutional weakness.

Aside from having an important ecological role in the ocean food web, small pelagic fishes have become the major food source in the Sulu-Celebes Sea (SCS) which is bordered by Indonesia, Malaysia and the Philippines. Conservation and management of these fishes are of prime importance because the people living around the SCS are highly dependent on these resources. Nevertheless, basic biological information, especially relating to genetic diversity, population genetic structure, and demographic patterns, are often deficient. In this study, population genetic methods were used to investigate the genetic structure and diversity as well as historical demography of four ecologically and economically important small pelagic fishes in the SCS: Auxis thazard (Lacepede, 1800); Bali sardine, Sardinella lemuru (Bleeker, 1853); Indian mackerel, Rastrelliger kanagurta (Cuvier, 1816); and bigeye scad, Selar crumenophthalmus (Bloch, 1793). Fish samples were collected from 5 geographic locations: (Philippines: Zamboanga, Tawi-Tawi and Palawan; Indonesia: Manado; and Malaysia: Kudat) around the SCS and muscle tissues were sequenced for the mitochondrial DNA (D-loop) control region ( n = 150, 231, 169 and 224 for AT, SL, RK, and SC, respectively). Low overall F ST values, high haplotype diversity but low genetic differentiation among haplotypes, and highly mixed clusters from BAPS analysis indicate no distinct genetic population structuring among the samples. Furthermore, neutrality tests, mismatch analysis and Bayesian skyline plots suggest population expansion for all species. Generally, these results indicate that the four marine pelagic species are very resilient over evolutionary time scales; yet, proper management is very necessary, especially because overexploitation of small pelagic fishes has already been reported in the SCS region.

Climate change studies in the Philippines are emerging fast, focusing on different fields of sciences. However, studies that address the fisheries sector remain insufficient. Here, we described a sector-based fisheries vulnerability assessment tool (Fish Vool) to evaluate the vulnerability of primary fishery commodities. Tool demonstration and validation were conducted in General Santos and Zamboanga City, which are the primary producers of tuna and sardine, respectively. Fish Vool revealed an overall medium vulnerability (low exposure, medium sensitivity, and low adaptive capacity) for both sectors. The vulnerability assessment of the tuna and sardine sectors emphasizes the potential of Fish Vool to assess climate change vulnerability for primary commodities and other fishery sectors.

Pattern recognition receptors (PRRs) are involved in the effective innate defense against several microbes. Here, we identified a nucleotide-oligomerization domain (NOD)-like receptor subfamily C (NLRC) from Japanese flounder (Paralichthys olivaceus). Full-length transcript of JfNLRC is composed of 3976 bp encoding a protein of 1175 deduced amino acid residues. The presence of a signature nucleotide-binding domain (NACHT) and leucine-rich repeated domain (LRR) suggested that the protein is a member of the NLR family. Interestingly, its C-terminus presents an extra PRY/SPRY (B30.2) domain similar to fish in the Trim (finTrim) family. A phylogenic tree of JfNLRC revealed that full-length JfNLRC diverged from the NOD1 and NOD2 clusters, and the NACHT domain in JfNLRC was clustered within the NLRC3 group. Stimulation by formalin-killed Edwardsiella tarda, Streptococcus iniae, and lipopolysaccharide (LPS) showed that the JfNLRC expression was raised a few hours after stimulation, suggesting this novel protein is involved in the immediate response against both Gram-positive and Gram-negative bacteria. Furthermore, the IL-1β mRNA expression level in JfNLRC-over-expressing HINAE cells was significantly increased, when compared to a control, after LPS-stimulation and E. tarda infection. These results suggested that JfNLRC probably induced IL-1β gene expression mediated by LPS-stimulation.

Interleukin 11 is a class-1 helical cytokine, having the four-helix bundle structure, possessing pleiotropic characteristics involved in physiological processes including blood production, bone formation and placentation. The interleukin 11 paralogues (IL11a and IL11b) have been identified in fish with only IL11a from carp and trout have been characterized and analyzed for its expression thus far. Here, we cloned and studied the structure and expression of IL11b in Japanese flounder (Paralichthys olivaceus), and compared this with the existing information on fish IL11 paralogues. Japanese flounder IL11b (poIL11b) cDNA is composed of 1536 bp encoding for 201 aa residues with a 23 aa leader peptide, three cysteine residues (C12, C183 and C198) and four potential N-linked glycosylation sites. poIL11b does not show constitutive expression in tissues of adult fish except for the very slight expression in kidney and spleen, and the very high expression in peripheral blood leukocytes (PBLs). poIL11b is transiently up-regulated by bacterial lipopolysaccharide (LPS) and increasingly stimulated by the IFN inducer poly I:C in kidney, spleen and peripheral blood leukocytes of adult fish in vitro. It is likewise slightly stimulated by Edwardsiella tarda infection but is highly expressed after hirame rhabdovirus (HIRRV) infection in kidney of juvenile fish. The stimulation studies suggest that poIL11b, aside from its role in bacterial infection, is well involved in antiviral responses. Moreover, poIL11b structure and expression pattern appears to be slightly distinct and opposite to IL11a, respectively, suggesting a complementation of function of the duplicate fish IL11 genes.

Members of the interleukin 6 (IL6)-cytokine subfamily of proteins are involved in numerous physiological processes including cellular development, inflammatory function, and acute phase and immune responses. Previously, a cytokine-like gene named M17, which is closely associated with the IL6 subfamily, has been identified in fish with no apparent orthologue in higher vertebrates. Here, we cloned a novel cDNA from Japanese flounder, Paralichthys olivaceus, which had significant identity but exhibited contrasting expression with fish M17s, named here as M17 Homologue (MSH). With subsequent in silico search and full annotation of the M17 orthologue in zebrafish (Danio rerio), MSH orthologues in tiger puffer (Takifugu rubripes), green spotted pufferfish (Tetraodon nigroviridis) and stickleback (Gastorosteus aculeatus), as well as structural, synteny comparisons and phylogenetic analysis with known IL6-cytokines, we determined the novelty of the fish MSH. Japanese flounder MSH was observed to be highly expressed in immune-related tissues and are induced by immune stimulants, lipopolysaccharide (LPS), polyI:C and peptidoglycan (PG) in vitro suggesting that it is involved in fish immunity particularly against viral and bacterial agents, a functional feature exhibited by previously reported fish cytokines.

South and Southeast Asian countries have undertaken demersal trawl surveys to measure the fisheries potential of their waters throughout the 20th century. However, ensuring full use of, and easy access to the resulting data is a challenge in developing countries. The “Fisheries Resource Information System and Tools” (FiRST) was developed through a regional collaborative effort across eight South and Southeast Asian counties to meet these needs. FiRST is a data management system for scientific trawl survey data and includes data summary and visualization tools, an analytical routine to estimate biomass, and data import/export modules. The FiRST software has also facilitated the establishment of a regional database, ‘TrawlBase’, which contains more than 20,000 hauls or stations from scientific trawl surveys in 10 countries conducted between 1926 and 1995. The regional database is an important regional resource for coastal fisheries management complementing national fisheries catch statistics. This article describes the refined version of FiRST (version 2004) and provides examples on how the database (‘TrawlBase’) has been used to date for analyses aimed at establishing historic resource baselines and examining the status of coastal fishery resources. The results show a severe decline of resource biomass to an average of 22% of pre-exploitation levels, with cases as low