1. CRISPR Interference Efficiently Induces Specific and Reversible Gene Silencing in Human iPSCs
- Author
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Amanda H. Chan, Nathaniel Huebsch, Mohammad A. Mandegar, Annie Truong, Yuichiro Miyaoka, Ekaterina B. Frolov, Po-Lin So, Tilde Eskildsen, David E. Gordon, Lei S. Qi, Luke A. Gilbert, Kristin Holmes, Søren P. Sheikh, Bruce R. Conklin, Jacqueline E. Villalta, Edward Shin, Luke M. Judge, Jonathan S. Weissman, Nevan J. Krogan, Michael P. Olvera, Max A. Horlbeck, and C. Ian Spencer
- Subjects
0301 basic medicine ,Induced Pluripotent Stem Cells ,Biology ,Regenerative Medicine ,Cardiovascular ,Medical and Health Sciences ,Article ,03 medical and health sciences ,Gene expression ,Genetics ,Humans ,2.1 Biological and endogenous factors ,Gene silencing ,CRISPR ,Clustered Regularly Interspaced Short Palindromic Repeats ,Gene Silencing ,Stem Cell Research - Embryonic - Human ,Aetiology ,Induced pluripotent stem cell ,Gene ,Psychological repression ,CRISPR interference ,Stem Cell Research - Induced Pluripotent Stem Cell ,Stem Cell Research - Induced Pluripotent Stem Cell - Human ,Cas9 ,Human Genome ,Cell Biology ,Biological Sciences ,Stem Cell Research ,Cell biology ,Heart Disease ,030104 developmental biology ,Molecular Medicine ,Biotechnology ,Developmental Biology - Abstract
Developing technologies for efficient and scalable disruption of gene expression will provide powerful tools for studying gene function, developmental pathways, and disease mechanisms. Here, we develop clustered regularly interspaced short palindromic repeat interference (CRISPRi) to repress gene expression in human induced pluripotent stem cells (iPSCs). CRISPRi, in which a doxycycline-inducible deactivated Cas9 is fused to a KRAB repression domain, can specifically and reversibly inhibit gene expression in iPSCs and iPSC-derived cardiac progenitors, cardiomyocytes, and T lymphocytes. This gene repression system is tunable and has the potential to silence single alleles. Compared with CRISPR nuclease (CRISPRn), CRISPRi gene repression is more efficient and homogenous across cell populations. The CRISPRi system in iPSCs provides a powerful platform to perform genome-scale screens in a wide range of iPSC-derived cell types, dissect developmental pathways, and model disease.
- Published
- 2016
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