1. Transforming growth factor-beta receptor type 1 (TGFBR1) is not associated with non-syndromic cleft lip with or without cleft palate in patients of Central European descent
- Author
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Stefan Herms, Carola Lauster, Stefanie Birnbaum, Anton Dunsche, Bert Braumann, Gül Schmidt, Michael Knapp, Markus Martini, Amalia Diaz Lacava, Meinhard Mende, Franziska Schiefke, Per Hoffmann, Elisabeth Mangold, Nilma Almeida de Assis, Heiko Reutter, Martin Scheer, Markus M. Nöthen, and Franz-Josef Kramer
- Subjects
Male ,Cleft Lip ,Receptor, Transforming Growth Factor-beta Type I ,Mice, Transgenic ,Single-nucleotide polymorphism ,Protein Serine-Threonine Kinases ,Biology ,Bioinformatics ,Risk Assessment ,Cohort Studies ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Species Specificity ,Genotype ,medicine ,Animals ,Humans ,Abnormalities, Multiple ,Genetic Predisposition to Disease ,Risk factor ,Craniofacial ,Genotyping ,030304 developmental biology ,Genetics ,0303 health sciences ,Soft palate ,Incidence ,Haplotype ,Infant, Newborn ,Gene Expression Regulation, Developmental ,Syndrome ,General Medicine ,Transmission disequilibrium test ,Pedigree ,3. Good health ,Cleft Palate ,Europe ,Disease Models, Animal ,Genetics, Population ,medicine.anatomical_structure ,Animals, Newborn ,Otorhinolaryngology ,Pediatrics, Perinatology and Child Health ,Female ,Receptors, Transforming Growth Factor beta ,030217 neurology & neurosurgery - Abstract
Objective Transforming growth factor-beta (TGF-β) type 1 receptor (also known as activin receptor-like kinase 5, ALK5) is expressed in palatal tissue during embryogenesis. Experimental studies in transgenic mice with a genetic deletion of Alk5 showed that TGF-β type 1 receptor is required for upper lip and midline fusion of the hard and soft palate. In humans, association of TGF-β type 1 receptor gene ( TGFBR1 ) and the development of non-syndromic cleft lip with or without cleft palate (NSCL/P) had been observed in a multiethnic sample of Chinese, Philippine, Indian and Turkish families. In order to re-evaluate the relevance of these findings, we carried out a family-based association study among 218 NSCL/P families of Central European descent. Methods Genomic DNA was obtained from peripheral blood of 218 complete parent–offspring triads with NSCL/P. The sample comprised 14 patients with cleft lip only (CLO) and 204 patients with cleft lip and palate (CLP). Genotyping and transmission disequilibrium test (TDT) were performed on all 218 triads with a total of 17 tagging single-nucleotide polymorphisms (SNPs). We also performed testing for extended haplotypes and a log-linear model by Weinberg was used to screen parent-of-origin effects. Furthermore the use of estimates for the relative risks (RR) of Weinberg's model was obtained. Results TDT analysis revealed no significant transmission distortion, neither at the level of individual markers nor at the level of haplotypes. Similarly negative results were obtained when we restricted our analysis to the subgroup of patients with CLP ( n = 204). Relative risk calculations (RR) of the children's and mothers’ genotypes obtained negative results, after correction of p -values for multiple testing. Likewise application of Weinberg's log-linear model did not find any evidence for parent-of-origin effects in our sample. Conclusion Despite the ample evidence supporting the role of TGF-β type 1 receptor as a critically important and widespread morphogenetic regulator of craniofacial development in murine models, our results do not support TGFBR1 as major risk factor for NSCL/P in patients of Central European descent.
- Published
- 2009
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