1. A library of induced pluripotent stem cells from clinically well-characterized, diverse healthy human individuals
- Author
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Jalaj Garg, Milind Mahajan, Nicole Dubois, Kristin G. Beaumont, Katherine C. Michelis, Marc R. Birtwistle, Seth I. Berger, Joseph Goldfarb, Jason C. Kovacic, David C. Thomas, Marc A. Miller, Bino Mathew, Priyanka Dhanan, Teeya Raghunandan, Evren U. Azeloglu, Ravi Iyengar, Joseph Tripodi, Himali Weerahandi, Christoph Schaniel, Rafael Dariolli, Jens Hansen, Moara Machado, Gomathi Jayaraman, Stephan C. Schürer, Colleen S. Lynch, Bin Hu, David M. Gonzalez, Dusica Vidovic, Sunita L. D’Souza, Vesna Najfeld, Arjun Singh Yadaw, Eric A. Sobie, Neelima C. Tangirala, Eric E. Schadt, Yuguang Xiong, and Robert Sebra
- Subjects
Resource ,Adult ,Male ,induced pluripotent stem cells ,Heart Ventricles ,Cell ,Clone (cell biology) ,similar physiology and transcriptomes ,cardiomyocytes ,Disease ,Computational biology ,Biology ,Biochemistry ,Cell Line ,Transcriptome ,Young Adult ,Risk Factors ,Ethnicity ,Genetics ,medicine ,Humans ,Genetic Predisposition to Disease ,Myocytes, Cardiac ,Calcium Signaling ,Heart Atria ,Induced pluripotent stem cell ,Gene ,Genetic association ,Whole genome sequencing ,Gene Expression Profiling ,Genetic Variation ,Cell Differentiation ,Karyotype ,clinically well-characterized healthy subjects ,Cell Biology ,Middle Aged ,Clone Cells ,genetic variants of mild common disease phenotypes or more severe disease with incomplete penetrance ,medicine.anatomical_structure ,Gene Expression Regulation ,whole-genome sequencing ,age- and sex-independent gene signature ,Health ,Microsatellite ,Female ,racially/ethnically diverse ,Developmental Biology - Abstract
Summary A library of well-characterized human induced pluripotent stem cell (hiPSC) lines from clinically healthy human subjects could serve as a useful resource of normal controls for in vitro human development, disease modeling, genotype-phenotype association studies, and drug response evaluation. We report generation and extensive characterization of a gender-balanced, racially/ethnically diverse library of hiPSC lines from 40 clinically healthy human individuals who range in age from 22 to 61 years. The hiPSCs match the karyotype and short tandem repeat identities of their parental fibroblasts, and have a transcription profile characteristic of pluripotent stem cells. We provide whole-genome sequencing data for one hiPSC clone from each individual, genomic ancestry determination, and analysis of mendelian disease genes and risks. We document similar transcriptomic profiles, single-cell RNA-sequencing-derived cell clusters, and physiology of cardiomyocytes differentiated from multiple independent hiPSC lines. This extensive characterization makes this hiPSC library a valuable resource for many studies on human biology., Highlights • A library of induced pluripotent stem cells from 40 healthy human subjects • Racially/ethnically diverse subjects of clinically well-characterized health • Whole-genome sequencing identifies variants of mild common phenotypes or incomplete penetrance • Similar physiology of cardiomyocytes from independent hiPSC clones and individuals, In this resource, Schaniel et al. report the generation and characterization of a gender-balanced, racially/ethnically diverse library of hiPSC lines from 40 clinically well-characterized healthy human individuals. The authors provide whole-genome sequencing data, ancestry determination, and analysis of mendelian disease genes and risks. Furthermore, similar physiology of cardiomyocytes differentiated from independent hiPSC clones derived from two individuals is documented.
- Published
- 2021
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